g.arboreum_cottongen_reftransV1_0007741, g.arboreum_cottongen_reftransV1_0007741 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A0A0D2SCX7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G080600 PE=4 SV=1) HSP 1 Score: 482.641 bits (1241), Expect = 7.522e-167 Identity = 282/291 (96.91%), Postives = 288/291 (98.97%), Query Frame = 3 Query: 3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRPC 875 C DSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRISDSQDLISILLQLLKTNNN SLNDAVTSILTTISITRS+RSRLIENGIVEILSNSLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLK+SK GTEDA+TVLWSTCCL+KEE+VKEAVVKGNGVTKILVIMQREGEGNVKMMCR+LVKALRAVCKDWCLGSYETKTTHIRPC Sbjct: 116 CDDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRISDSQDLISILLQLLKTNNNGSLNDAVTSILTTISITRSIRSRLIENGIVEILSNSLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKVSKRGTEDAVTVLWSTCCLSKEEKVKEAVVKGNGVTKILVIMQREGEGNVKMMCRDLVKALRAVCKDWCLGSYETKTTHIRPC 406
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A0A0D2RHH1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G080700 PE=4 SV=1) HSP 1 Score: 478.404 bits (1230), Expect = 3.419e-165 Identity = 279/291 (95.88%), Postives = 286/291 (98.28%), Query Frame = 3 Query: 3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRPC 875 C DSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKC EIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVL+LQHGSLNSKIKSVRVLDSLALDSESKRRISDSQDLISILL+LLKTNNN SLNDAVTSILTTISITRS+RSRLIENGIVEILSNSLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLK+SK GTEDA+TVLWSTCCLNKEE+VKEAVVKGNGVTKILVIMQREGEGNVKMMCR+LVKALRAVCKDWCLGSYETKTT IRPC Sbjct: 116 CDDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCAEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLMLQHGSLNSKIKSVRVLDSLALDSESKRRISDSQDLISILLELLKTNNNGSLNDAVTSILTTISITRSIRSRLIENGIVEILSNSLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKVSKRGTEDAVTVLWSTCCLNKEEKVKEAVVKGNGVTKILVIMQREGEGNVKMMCRDLVKALRAVCKDWCLGSYETKTTQIRPC 406
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A0A061FJ60_THECC (Plant U-box 29, putative OS=Theobroma cacao GN=TCM_035500 PE=4 SV=1) HSP 1 Score: 402.134 bits (1032), Expect = 3.907e-135 Identity = 226/290 (77.93%), Postives = 260/290 (89.66%), Query Frame = 3 Query: 3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 CVDSL+KVAEFVSC EENR+F+ RF E+IA VL+RKCVEIKALE AVRILDLILSENGV E LNKLIL+SNQE+ FLS+IVLILQ+GSLNSK +S+RVLDS+ALDSESKRRI+DSQ+LIS+L+ LLK+N+NE LNDAV S LT +SITRS++S+LI+NG VEILSNSLTEKSLK+LA L C EGRSAISS+PKCAA IVE+LLK+SKT TEDA+ VLWS CCL K+E+VKE VVKGNGVTKILV+MQREGEGNV+MMCR+LVKALRA CKDW LGSYET+TTHIRP Sbjct: 116 CVDSLTKVAEFVSCSEENRRFIVRFGDSSEIIASVLRRKCVEIKALEMAVRILDLILSENGVKERLNKLILESNQENNFLSSIVLILQNGSLNSKTESIRVLDSIALDSESKRRIADSQNLISVLVHLLKSNDNEPLNDAVVSFLTNVSITRSIKSQLIQNGAVEILSNSLTEKSLKMLAILCACPEGRSAISSDPKCAAGIVERLLKVSKTATEDAVLVLWSVCCLRKDEKVKEEVVKGNGVTKILVVMQREGEGNVRMMCRDLVKALRAGCKDWTLGSYETRTTHIRP 405
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: V4T886_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001380mg PE=4 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 1.329e-73 Identity = 151/300 (50.33%), Postives = 217/300 (72.33%), Query Frame = 3 Query: 3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKC-VEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSLT---------EKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 CVD L KVA+F + CE NR+F+A + GFVE + GVL RK EI LE+AVR+L+LI++ENGV E LN+LILK+ L + IL+ G+L+SKI S+++LDS++LD+ESKRR+ ++++L+S L LK +++LNDA+ SIL T+S+ RSV+++L+E G+V+IL+ L+ EKS+K+L+ ++TCSEGR A+S E CA +VE+++K+ KT EDA+ V+WS CC+ K+ RVKEAVV NG+TK+L++MQ E EG V+ MC +LVK L K LG+Y+TKT HI P Sbjct: 104 CVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILKT---YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL---GKASGLGNYQTKTAHIMP 397
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A0A067H7L3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015939mg PE=4 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 6.538e-73 Identity = 150/300 (50.00%), Postives = 216/300 (72.00%), Query Frame = 3 Query: 3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKC-VEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSLT---------EKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 CVD L KVA+F + CE NR+F+A + GFVE + GVL RK EI LE+AVR+L+LI++ENGV E LN+LIL + L + IL+ G+L+SKI S+++LDS++LD+ESKRR+ ++++L+S L LK +++LNDA+ SIL T+S+ RSV+++L+E G+V+IL+ L+ EKS+K+L+ ++TCSEGR A+S E CA +VE+++K+ KT EDA+ V+WS CC+ K+ RVKEAVV NG+TK+L++MQ E EG V+ MC +LVK L K LG+Y+TKT HI P Sbjct: 104 CVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNT---YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL---GKASGLGNYQTKTAHIMP 397
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: B9GTL1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s07130g PE=4 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 1.898e-71 Identity = 153/306 (50.00%), Postives = 219/306 (71.57%), Query Frame = 3 Query: 3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNN-ESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQRE-GEGNVKMMCRNLVKALRAVCKDWCLG----SYETKTTHIRPC 875 C+DS + EFVSC E +R+F+ FDGF+E I GVL CV+I+ LE+ +R+L +L ENGV E L+KL+ SN S L + + +L++GSL I V VL+S+ ++++SK+ ++ +QD++ +LLQLLKT+N+ + LN+ V S L ++SIT S+++RL++ G+VE+LS+ S+ EKSLK L+ + T ++GRSAIS +P CA AIVE+L+K+SKT TEDA+ VLWS CCL ++E+V E VV+ NGVTK+L+IMQ E GEGNV+ MC +L+K LR CK+ SYETKTTHI PC Sbjct: 111 CLDS---IVEFVSCGEVSRRFLVSFDGFLEAIVGVLNTNCVQIRVLESVIRVLSSLLLENGVNEKLHKLVFTSN--SNCLPSFISVLRNGSLEYNIACVTVLESITINNQSKQLVAGTQDVLPVLLQLLKTDNDHQDLNEVVLSFLISVSITLSIKTRLVQLGLVEVLSSMLLSQNAAVSVVEKSLKALSMICTRADGRSAISVDPTCAGAIVERLMKVSKTATEDAVVVLWSMCCLFRDEKVLERVVRSNGVTKVLLIMQSEVGEGNVRRMCGDLIKVLRFGCKNGGGLGGAVSYETKTTHIMPC 411
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A0A067L3L7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25208 PE=4 SV=1) HSP 1 Score: 238.424 bits (607), Expect = 2.023e-71 Identity = 147/303 (48.51%), Postives = 223/303 (73.60%), Query Frame = 3 Query: 6 VDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNN-ESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLG---SYETKTTHIRPC 875 V+SL K+ EF++ EEN +F+ RFDGF++ I VL R+ VEI+ LE +R+LDLIL +NG+ E +++L L Q LS+ + ++++G+ NSKI+S+RVL S++L++ESKR I+++Q+LI +LL LLK+ + +L+D V S+L +++ITRS+++++++ G+V++LSN SL EK LKLL+ +STC+EGR+AIS + KCA IVE+L+K++KT TEDA+ VLWS CC ++ERV+E V+ NG+TK+L++MQ EG+G V+ MC L+K +R K+ G SYETKTTHI PC Sbjct: 112 VESLVKIVEFLNYSEENSRFLVRFDGFIDAIVIVLSREGVEIQVLELIIRVLDLILVQNGIKEKVHRLFL---QNQNCLSSFLSVIKNGNSNSKIQSIRVLGSISLNNESKRFIAETQNLIPVLLHLLKSETDLPALHDTVLSLLISLTITRSIKTQIVQLGLVQLLSNTLSNKNAAISLIEKCLKLLSIISTCTEGRAAISEDAKCAGCIVERLMKVTKTATEDAVLVLWSLCCTFRDERVQEKVMGSNGLTKLLLVMQSEGDGTVRRMCGELIKVMRNRYKNGGNGMVVSYETKTTHIMPC 411
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: M5VJ24_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006448mg PE=4 SV=1) HSP 1 Score: 231.106 bits (588), Expect = 1.485e-68 Identity = 147/302 (48.68%), Postives = 216/302 (71.52%), Query Frame = 3 Query: 6 VDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSL---------TEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQR-EGEGN-VKMMCRNLVKALRAVCKDWCLG-SYETKTTHIRPC 875 + SLSK+ +F +ENRKF+A F+GFV I GVL R+ VEI+ LE+ +R+LDLIL +NGV E L +L+ KSN+ LS+I L+LQ GSL+SKI+S RVLDS+AL++ESKR I++ + L+S+L LL + +++L+ V S L ++S+TR+V++ L+ G+V +++ +L EK LKLL+T++TC+EGRSAIS E KCAAA+ E+L+K+S++ TED L VLWS CC+ ++R +E+V++ +G K+L++MQ GEGN V+ MC +L+K L LG SY+TKT HI PC Sbjct: 115 LHSLSKMVDFAKAGDENRKFLANFNGFVPAIVGVLNREGVEIEVLESVIRVLDLILPQNGVKEQLRQLLTKSNRNC--LSSIRLLLQKGSLSSKIESARVLDSIALEAESKRLIAEKEGLLSLLNDLLSSETDQNLHGVVFSCLASVSVTRTVKAELVRFGLVRVITTTLLNPDTTIWLAEKCLKLLSTIATCAEGRSAISEEEKCAAAVAERLMKVSRSATEDGLAVLWSVCCMLGDKRARESVMRSHGAAKVLLVMQSGYGEGNFVRRMCGDLIKVLSV---GLGLGLSYDTKTLHIMPC 411
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: B9H7Q2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s21210g PE=4 SV=2) HSP 1 Score: 229.18 bits (583), Expect = 9.168e-68 Identity = 153/310 (49.35%), Postives = 211/310 (68.06%), Query Frame = 3 Query: 3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXX--XXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQRE-GEGN-VKMMCRNLVKALRAVCKDWCLG------SYETKTTHIRPC 875 C+DS + EF S E NR +A FDGF+E I GVL ++I+ LE+ VRIL LIL ENGV E L+KLILKS+ S L + + IL++GSL SK+ VL+S+ ++ESKR I+ L I+ + N+N+ L+D V S L +S+ RS++S+L++ GIVE+LSN S+ EKSLK+L+ + TC++G+SA+S + KCA AIVE+L+K+SKT TEDA+ VLWS CCL ++E+V E V + NGVTK+L++MQ E GEGN V+ MC +L+K LR CK+ +G SYETKTTHI PC Sbjct: 107 CLDS---IVEFASRGEVNRSLLASFDGFLETIVGVLSINGMQIRVLESVVRILSLILLENGVNEKLHKLILKSSSNSSCLPSFISILRNGSLESKMACFTVLESVTTNNESKRFIAGVENNFLPVIIHLIKIDNDNQELHDVVLSFLIAVSVARSIKSQLVQLGIVEVLSNMMSSKNAAISVVEKSLKILSMVCTCADGQSALSGDQKCAGAIVERLMKVSKTATEDAVVVLWSMCCLFRDEKVVEKVARSNGVTKVLLVMQSEVGEGNYVRRMCGDLIKVLRFGCKN--VGGFSGAVSYETKTTHIMPC 411
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A5AEH0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025009 PE=4 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 1.819e-63 Identity = 143/297 (48.15%), Postives = 203/297 (68.35%), Query Frame = 3 Query: 12 SLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSL---------TEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKL-LKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 +L K+ ++ S +ENR+FVA DGFV V+AGVL I+ LE VRILDL++ E GV E + LILKSN++ LSAI+LIL+ GS +SKI S R+L+++A+D ESKR IS+ + L+S+LLQLL + + S D+V S L I++TR +++L+ +G+V+ L+ +L TEKS+KLL T+S C +G AI +P C AA+V+++ +KLS + EDA+TVLWS C LN++ + +EAV K G+TKIL++MQ NV+ MC +LVK R K CL SY+TKTTHI P Sbjct: 106 ALPKILDYASSSDENRRFVASLDGFVPVVAGVLGNAGAXIEILELVVRILDLVMVEKGVKEQIQGLILKSNRD--HLSAILLILEKGSSDSKIASARILEAIAIDPESKRSISEREGLLSVLLQLLSSQTDSSSLDSVLSCLIAITVTRQTKTQLVRSGLVQTLAKTLSTSNYPISTTEKSIKLLLTISNCRDGHQAICEDPICVAAVVQRMSMKLSSSAVEDAVTVLWSVCYLNRDSKAQEAVAKSTGLTKILLLMQTNCSANVRRMCCDLVKIFRVNSKS-CLASYDTKTTHITP 399
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Match: PUB29_ARATH (U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.638e-35 Identity = 110/304 (36.18%), Postives = 180/304 (59.21%), Query Frame = 3 Query: 6 VDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXX--XXXXXXXXXXXKTNNNESLNDAXXXXXXXXXX---------XXXXXXXXXENGIVEILSN-SLTEKSLKLLATLSTCSEGRSAISSEP--KCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEER-VKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 +++L K+ FV + NR+F+++ FV ++ +++ K +I+ + A+RILD I + E L+ L+L +N L+AI+L +Q G+L SKI+SVRVLD ++ D++SK I++ + + +++ SL +A S L TIS +++ + + E L+N ++TEKSLKLL TLS+ EGR I + +C +V+KLLK+S T TE A+T+LW C + +E++ V+E V + NGVTK+LV++Q V+ M ++L+K L+ L +YETKTTHI P Sbjct: 117 LENLMKIVRFVKDSDSNREFLSKKMEFVPMLVDIIRTKKTKIELVIMAIRILDSIKVDR---ERLSNLML-ANDGGDCLTAILLAIQRGNLESKIESVRVLDWISFDAKSKLMIAERDGVLTEMMKSISITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLTNVAVTEKSLKLLETLSSKREGRLEICGDDNGRCVEGVVKKLLKVSTTATEHAVTILWCLCYVFREDKTVEETVERSNGVTKLLVVIQSNCSAMVRQMAKDLIKVLK--FNSSALAAYETKTTHIMP 414
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Match: PUB28_ARATH (U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 7.656e-29 Identity = 107/301 (35.55%), Postives = 177/301 (58.80%), Query Frame = 3 Query: 9 DSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVL--KRKCVEIKALET--AVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 D+ SK+ F +ENR+F+A D FV ++ ++ R + + L AV+IL +I + L+ LIL + + L++ L+++ G+ KI VL+ +A+D+ESK I+ + L++ +++L+ ++++ SL +A S+L I+ ++ V+ LI +V L++ S+TEK LKLL +S+C EGRS I + C +V KL+K+S TE A+TVLWS C L KE++ ++AV++ NGVTKIL+++Q V+ M +L+K + + CL YETKTTHI P Sbjct: 112 DARSKILRFARESDENREFLAGKDDFVAMLVDLISDSRNFSDSQLLLVGEAVKILSMIRRKIFDRRRLSNLILTNGGDC--LTSFFLLIKRGNPKLKIDCSAVLEFIAVDAESKLIIAKGEGLVTEIIKLISSDSDSSLIEANLSLLIAIASSKRVKLALIREKLVTKLTSLLTDPTTSVSVTEKCLKLLEAISSCKEGRSEI-CDGVCVETVVNKLMKVSTAATEHAVTVLWSVCYLFKEKKAQDAVIRINGVTKILLLLQSNCSLTVRHMLTDLLKVFKVNSRS-CLSVYETKTTHIMP 408
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Match: PUB27_ARATH (U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 8.582e-21 Identity = 54/119 (45.38%), Postives = 75/119 (63.03%), Query Frame = 3 Query: 519 EKSLKLLATLSTCSEGRSAI-SSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 EK LKLL L++ EGRS I + +C +V+KL+K+S TE A+TVLWS L KE++ EAV NGVTKIL+++Q V+ M +L+K + + CL +Y+TKTTHI P Sbjct: 302 EKCLKLLEILASTKEGRSEICGGDGECLKTVVKKLMKVSTAATEHAVTVLWSVSYLFKEDKALEAVTSVNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVNSRS-CLSAYDTKTTHIMP 419 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0007741 ID=g.arboreum_cottongen_reftransV1_0007741; Name=g.arboreum_cottongen_reftransV1_0007741; organism=Gossypium arboreum; type=contig; length=962bpback to top |