g.arboreum_cottongen_reftransV1_0007741, g.arboreum_cottongen_reftransV1_0007741 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A0A068VF12_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_221 OS=Coffea canephora GN=GSCOC_T00011999001 PE=4 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 2.370e-46 Identity = 118/296 (39.86%), Postives = 183/296 (61.82%), Query Frame = 3 Query: 12 SLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIV----EILSNS-----LTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 S +K+ EFV EENR+FVA V + +L R E + + + +L++I ENGV E LN+ ILKS+ + +LS + GSL+S+I S ++L+S+A D++S+R+I++ Q L+ L +L + S +A S L +S +++ + L+ GIV EILS S + EK+ ++LA+++TC++GR+AIS + C +V++L+K S TE + VLWS CCL ++ +EAV+K NGVTK+L++MQ + V+ MC +LVK LR CL SYET+TTHI P Sbjct: 143 SATKLVEFVRFSEENRRFVANSAFGVSNLVEIL-RTSEETQVSDQILLVLEIISPENGVKELLNEKILKSDFD--YLSKFFWFFRKGSLSSRIASAKILESIASDADSQRKIAEKQGLLFELYKLSNEETDSSAVEASLSALIAVSTSKTAKKELVRFGIVKTVGEILSGSEAARPVIEKAAEVLASVATCTDGRAAISEDEGCIMGVVKRLMKCSGVATEHGIVVLWSLCCLARDRTAQEAVLKVNGVTKVLLVMQSDCSAGVRKMCGDLVKVLRVKNSKSCLASYETRTTHIMP 435
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: I1KTF9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 6.503e-46 Identity = 123/299 (41.14%), Postives = 180/299 (60.20%), Query Frame = 3 Query: 9 DSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQES--KFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 +SLSK+A F EENR F+ R + FV V+ G L ++ L+ V LDL++S+ EG+ LILK E + + +++L+LQ GS SKI S RVL S+A+D+ESK +++ + L+S LL L+ + L + S L +IS R + +L+ G V++ SN S+ EK LKL+ T+S+ EGRS I + C +AIV+K+LK+S TE A+T LWS C L ++++ +EAV K NG+TKIL++MQ V+ M +L+K R K CL SY+TKTTHI P Sbjct: 120 NSLSKIARFAQDSEENRDFLVRTECFVPVLVGFLDNVNGGVEFLQQVVTALDLVISKMEDREGMKNLILKRQGEGEKQSVDSLLLVLQQGSHASKIASARVLKSVAVDAESKLLLAEKEGLVSELLNLITPEKDPDLIENCLSCLVSISTPRRSKMKLVRLGAVKVFSNLLSAPGLSVSVKEKVLKLVETVSSTKEGRSEICEDSACVSAIVDKVLKVSSVATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQMSSDLLKIFRVNSKS-CLSSYDTKTTHIMP 417
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A0A0B2RAI9_GLYSO (U-box domain-containing protein 27 OS=Glycine soja GN=glysoja_008494 PE=4 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 6.708e-46 Identity = 123/299 (41.14%), Postives = 180/299 (60.20%), Query Frame = 3 Query: 9 DSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQES--KFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 +SLSK+A F EENR F+ R + FV V+ G L ++ L+ V LDL++S+ EG+ LILK E + + +++L+LQ GS SKI S RVL S+A+D+ESK +++ + L+S LL L+ + L + S L +IS R + +L+ G V++ SN S+ EK LKL+ T+S+ EGRS I + C +AIV+K+LK+S TE A+T LWS C L ++++ +EAV K NG+TKIL++MQ V+ M +L+K R K CL SY+TKTTHI P Sbjct: 120 NSLSKIARFAQDSEENRDFLVRTECFVPVLVGFLDNVNGGVEFLQQVVTALDLVISKMEDREGMKNLILKRQGEGEKQSVDSLLLVLQQGSHASKIASARVLKSVAVDAESKLLLAEKEGLVSELLNLITPEKDPDLIENCLSCLVSISTPRRSKMKLVRLGAVKVFSNLLSAPGLSVSVKEKVLKLVETVSSTKEGRSEICEDSACVSAIVDKVLKVSSVATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQMSSDLLKIFRVNSKS-CLSSYDTKTTHIMP 417
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A0A0D2P3Z5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G064700 PE=4 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 2.094e-45 Identity = 123/301 (40.86%), Postives = 180/301 (59.80%), Query Frame = 3 Query: 3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVK-GNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRPC 875 C SL+K+ F EENR+F+AR DG + + ++ +I +E V ILDLI S+ + L ES LS I+L+LQ G+ +S+I+S+R+L+S+A+D ESK +I++ + L+ L+ L +E L +A S L+ I+ + V+++LI+ + L N S+ EKSLKLL TLS C EGR+ I + AIV+K+LK S TE A+TVLWS CCL +EE+ +EAVV NG+TK L++MQ + + M +L+K R V + CL SY+TKTTHI PC Sbjct: 114 CSSSLAKIVCFAGESEENREFLARMDGLLTAVFDFMRNAESDINLMEQVVSILDLIQSKIQDKKPL--------LESNCLSTILLVLQRGTSDSQIQSLRLLESIAIDGESKLKIAEKEGLLLELVNSLSKEKDERLIEASLSCLSAITKPKRVKTKLIQYRTIPELKNLLSEPNMSISIIEKSLKLLETLSFCKEGRAEIRHDSNLLQAIVQKVLKASSKATEHAVTVLWSVCCLFREEKAQEAVVGCSNGLTKFLLLMQSDCSSATRQMSADLLKLFR-VNSNSCLSSYDTKTTHIMPC 405
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: V7CRC1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G270300g PE=4 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 8.100e-45 Identity = 124/300 (41.33%), Postives = 175/300 (58.33%), Query Frame = 3 Query: 6 VDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQES--KFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 +DSL+K+A F EENR F+ R + FV ++ G L ++ LE V LDL++ + EGL LILK E + L ++ + LQ GS ++I SVRVL S+A+D ESK I++ + L+S LL+L+ + L D S L IS R + +L+ G V++ S S+TEK LKL+ T+S+ EGRS I + C AAIV K+LK+S TE A+T LWS C L +++ +EAV NG+TKIL++MQ V+ M +L+K R K CL SY+TKTTHI P Sbjct: 119 IDSLAKIARFAQDSEENRDFLVRTECFVPLLVGFLDNVNGSVEFLEQVVTALDLVIGKMEDREGLKNLILKRQGEGEKQSLDSLFIALQQGSHAAQIASVRVLTSVAVDVESKLLIAEKEGLVSELLKLITPEKDPDLIDNCLSCLVAISSPRRSKMKLVRLGAVKVFSKLLLASNMSVSVTEKVLKLVETVSSTKEGRSEICEDSACVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDQTAQEAVTNANGLTKILLLMQSNCSPQVRQMSVDLLKIFRVNSKS-CLSSYDTKTTHIMP 417
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Match: PUB29_ARATH (U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.638e-35 Identity = 110/304 (36.18%), Postives = 180/304 (59.21%), Query Frame = 3 Query: 6 VDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXX--XXXXXXXXXXXKTNNNESLNDAXXXXXXXXXX---------XXXXXXXXXENGIVEILSN-SLTEKSLKLLATLSTCSEGRSAISSEP--KCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEER-VKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 +++L K+ FV + NR+F+++ FV ++ +++ K +I+ + A+RILD I + E L+ L+L +N L+AI+L +Q G+L SKI+SVRVLD ++ D++SK I++ + + +++ SL +A S L TIS +++ + + E L+N ++TEKSLKLL TLS+ EGR I + +C +V+KLLK+S T TE A+T+LW C + +E++ V+E V + NGVTK+LV++Q V+ M ++L+K L+ L +YETKTTHI P Sbjct: 117 LENLMKIVRFVKDSDSNREFLSKKMEFVPMLVDIIRTKKTKIELVIMAIRILDSIKVDR---ERLSNLML-ANDGGDCLTAILLAIQRGNLESKIESVRVLDWISFDAKSKLMIAERDGVLTEMMKSISITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLTNVAVTEKSLKLLETLSSKREGRLEICGDDNGRCVEGVVKKLLKVSTTATEHAVTILWCLCYVFREDKTVEETVERSNGVTKLLVVIQSNCSAMVRQMAKDLIKVLK--FNSSALAAYETKTTHIMP 414
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Match: PUB28_ARATH (U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 7.656e-29 Identity = 107/301 (35.55%), Postives = 177/301 (58.80%), Query Frame = 3 Query: 9 DSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVL--KRKCVEIKALET--AVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 D+ SK+ F +ENR+F+A D FV ++ ++ R + + L AV+IL +I + L+ LIL + + L++ L+++ G+ KI VL+ +A+D+ESK I+ + L++ +++L+ ++++ SL +A S+L I+ ++ V+ LI +V L++ S+TEK LKLL +S+C EGRS I + C +V KL+K+S TE A+TVLWS C L KE++ ++AV++ NGVTKIL+++Q V+ M +L+K + + CL YETKTTHI P Sbjct: 112 DARSKILRFARESDENREFLAGKDDFVAMLVDLISDSRNFSDSQLLLVGEAVKILSMIRRKIFDRRRLSNLILTNGGDC--LTSFFLLIKRGNPKLKIDCSAVLEFIAVDAESKLIIAKGEGLVTEIIKLISSDSDSSLIEANLSLLIAIASSKRVKLALIREKLVTKLTSLLTDPTTSVSVTEKCLKLLEAISSCKEGRSEI-CDGVCVETVVNKLMKVSTAATEHAVTVLWSVCYLFKEKKAQDAVIRINGVTKILLLLQSNCSLTVRHMLTDLLKVFKVNSRS-CLSVYETKTTHIMP 408
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Match: PUB27_ARATH (U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 8.582e-21 Identity = 54/119 (45.38%), Postives = 75/119 (63.03%), Query Frame = 3 Query: 519 EKSLKLLATLSTCSEGRSAI-SSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 EK LKLL L++ EGRS I + +C +V+KL+K+S TE A+TVLWS L KE++ EAV NGVTKIL+++Q V+ M +L+K + + CL +Y+TKTTHI P Sbjct: 302 EKCLKLLEILASTKEGRSEICGGDGECLKTVVKKLMKVSTAATEHAVTVLWSVSYLFKEDKALEAVTSVNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVNSRS-CLSAYDTKTTHIMP 419 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0007741 ID=g.arboreum_cottongen_reftransV1_0007741; Name=g.arboreum_cottongen_reftransV1_0007741; organism=Gossypium arboreum; type=contig; length=962bpback to top |