g.arboreum_cottongen_reftransV1_0007741, g.arboreum_cottongen_reftransV1_0007741 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0007741
Unique Nameg.arboreum_cottongen_reftransV1_0007741
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length962
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr5chromosomeg.arboreum_cottongen_reftransV1_0007741:1..962 .
Chr5:15048194..15049155 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A0A068VF12_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_221 OS=Coffea canephora GN=GSCOC_T00011999001 PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.370e-46
Identity = 118/296 (39.86%), Postives = 183/296 (61.82%), Query Frame = 3
Query:   12 SLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIV----EILSNS-----LTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872
            S +K+ EFV   EENR+FVA     V  +  +L R   E +  +  + +L++I  ENGV E LN+ ILKS+ +  +LS      + GSL+S+I S ++L+S+A D++S+R+I++ Q L+  L +L     + S  +A  S L  +S +++ +  L+  GIV    EILS S     + EK+ ++LA+++TC++GR+AIS +  C   +V++L+K S   TE  + VLWS CCL ++   +EAV+K NGVTK+L++MQ +    V+ MC +LVK LR      CL SYET+TTHI P
Sbjct:  143 SATKLVEFVRFSEENRRFVANSAFGVSNLVEIL-RTSEETQVSDQILLVLEIISPENGVKELLNEKILKSDFD--YLSKFFWFFRKGSLSSRIASAKILESIASDADSQRKIAEKQGLLFELYKLSNEETDSSAVEASLSALIAVSTSKTAKKELVRFGIVKTVGEILSGSEAARPVIEKAAEVLASVATCTDGRAAISEDEGCIMGVVKRLMKCSGVATEHGIVVLWSLCCLARDRTAQEAVLKVNGVTKVLLVMQSDCSAGVRKMCGDLVKVLRVKNSKSCLASYETRTTHIMP 435          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: I1KTF9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 6.503e-46
Identity = 123/299 (41.14%), Postives = 180/299 (60.20%), Query Frame = 3
Query:    9 DSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQES--KFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872
            +SLSK+A F    EENR F+ R + FV V+ G L      ++ L+  V  LDL++S+    EG+  LILK   E   + + +++L+LQ GS  SKI S RVL S+A+D+ESK  +++ + L+S LL L+    +  L +   S L +IS  R  + +L+  G V++ SN         S+ EK LKL+ T+S+  EGRS I  +  C +AIV+K+LK+S   TE A+T LWS C L ++++ +EAV K NG+TKIL++MQ      V+ M  +L+K  R   K  CL SY+TKTTHI P
Sbjct:  120 NSLSKIARFAQDSEENRDFLVRTECFVPVLVGFLDNVNGGVEFLQQVVTALDLVISKMEDREGMKNLILKRQGEGEKQSVDSLLLVLQQGSHASKIASARVLKSVAVDAESKLLLAEKEGLVSELLNLITPEKDPDLIENCLSCLVSISTPRRSKMKLVRLGAVKVFSNLLSAPGLSVSVKEKVLKLVETVSSTKEGRSEICEDSACVSAIVDKVLKVSSVATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQMSSDLLKIFRVNSKS-CLSSYDTKTTHIMP 417          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A0A0B2RAI9_GLYSO (U-box domain-containing protein 27 OS=Glycine soja GN=glysoja_008494 PE=4 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 6.708e-46
Identity = 123/299 (41.14%), Postives = 180/299 (60.20%), Query Frame = 3
Query:    9 DSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQES--KFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872
            +SLSK+A F    EENR F+ R + FV V+ G L      ++ L+  V  LDL++S+    EG+  LILK   E   + + +++L+LQ GS  SKI S RVL S+A+D+ESK  +++ + L+S LL L+    +  L +   S L +IS  R  + +L+  G V++ SN         S+ EK LKL+ T+S+  EGRS I  +  C +AIV+K+LK+S   TE A+T LWS C L ++++ +EAV K NG+TKIL++MQ      V+ M  +L+K  R   K  CL SY+TKTTHI P
Sbjct:  120 NSLSKIARFAQDSEENRDFLVRTECFVPVLVGFLDNVNGGVEFLQQVVTALDLVISKMEDREGMKNLILKRQGEGEKQSVDSLLLVLQQGSHASKIASARVLKSVAVDAESKLLLAEKEGLVSELLNLITPEKDPDLIENCLSCLVSISTPRRSKMKLVRLGAVKVFSNLLSAPGLSVSVKEKVLKLVETVSSTKEGRSEICEDSACVSAIVDKVLKVSSVATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQMSSDLLKIFRVNSKS-CLSSYDTKTTHIMP 417          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A0A0D2P3Z5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G064700 PE=4 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 2.094e-45
Identity = 123/301 (40.86%), Postives = 180/301 (59.80%), Query Frame = 3
Query:    3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVK-GNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRPC 875
            C  SL+K+  F    EENR+F+AR DG +  +   ++    +I  +E  V ILDLI S+    + L         ES  LS I+L+LQ G+ +S+I+S+R+L+S+A+D ESK +I++ + L+  L+  L    +E L +A  S L+ I+  + V+++LI+   +  L N         S+ EKSLKLL TLS C EGR+ I  +     AIV+K+LK S   TE A+TVLWS CCL +EE+ +EAVV   NG+TK L++MQ +     + M  +L+K  R V  + CL SY+TKTTHI PC
Sbjct:  114 CSSSLAKIVCFAGESEENREFLARMDGLLTAVFDFMRNAESDINLMEQVVSILDLIQSKIQDKKPL--------LESNCLSTILLVLQRGTSDSQIQSLRLLESIAIDGESKLKIAEKEGLLLELVNSLSKEKDERLIEASLSCLSAITKPKRVKTKLIQYRTIPELKNLLSEPNMSISIIEKSLKLLETLSFCKEGRAEIRHDSNLLQAIVQKVLKASSKATEHAVTVLWSVCCLFREEKAQEAVVGCSNGLTKFLLLMQSDCSSATRQMSADLLKLFR-VNSNSCLSSYDTKTTHIMPC 405          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: V7CRC1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G270300g PE=4 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.100e-45
Identity = 124/300 (41.33%), Postives = 175/300 (58.33%), Query Frame = 3
Query:    6 VDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQES--KFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872
            +DSL+K+A F    EENR F+ R + FV ++ G L      ++ LE  V  LDL++ +    EGL  LILK   E   + L ++ + LQ GS  ++I SVRVL S+A+D ESK  I++ + L+S LL+L+    +  L D   S L  IS  R  + +L+  G V++ S          S+TEK LKL+ T+S+  EGRS I  +  C AAIV K+LK+S   TE A+T LWS C L +++  +EAV   NG+TKIL++MQ      V+ M  +L+K  R   K  CL SY+TKTTHI P
Sbjct:  119 IDSLAKIARFAQDSEENRDFLVRTECFVPLLVGFLDNVNGSVEFLEQVVTALDLVIGKMEDREGLKNLILKRQGEGEKQSLDSLFIALQQGSHAAQIASVRVLTSVAVDVESKLLIAEKEGLVSELLKLITPEKDPDLIDNCLSCLVAISSPRRSKMKLVRLGAVKVFSKLLLASNMSVSVTEKVLKLVETVSSTKEGRSEICEDSACVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDQTAQEAVTNANGLTKILLLMQSNCSPQVRQMSVDLLKIFRVNSKS-CLSSYDTKTTHIMP 417          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Match: PUB29_ARATH (U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.638e-35
Identity = 110/304 (36.18%), Postives = 180/304 (59.21%), Query Frame = 3
Query:    6 VDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXX--XXXXXXXXXXXKTNNNESLNDAXXXXXXXXXX---------XXXXXXXXXENGIVEILSN-SLTEKSLKLLATLSTCSEGRSAISSEP--KCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEER-VKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872
            +++L K+  FV   + NR+F+++   FV ++  +++ K  +I+ +  A+RILD I  +    E L+ L+L +N     L+AI+L +Q G+L SKI+SVRVLD ++ D++SK  I++        +    +  +++ SL +A  S L TIS               +++ +  + E L+N ++TEKSLKLL TLS+  EGR  I  +   +C   +V+KLLK+S T TE A+T+LW  C + +E++ V+E V + NGVTK+LV++Q      V+ M ++L+K L+       L +YETKTTHI P
Sbjct:  117 LENLMKIVRFVKDSDSNREFLSKKMEFVPMLVDIIRTKKTKIELVIMAIRILDSIKVDR---ERLSNLML-ANDGGDCLTAILLAIQRGNLESKIESVRVLDWISFDAKSKLMIAERDGVLTEMMKSISITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLTNVAVTEKSLKLLETLSSKREGRLEICGDDNGRCVEGVVKKLLKVSTTATEHAVTILWCLCYVFREDKTVEETVERSNGVTKLLVVIQSNCSAMVRQMAKDLIKVLK--FNSSALAAYETKTTHIMP 414          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Match: PUB28_ARATH (U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.656e-29
Identity = 107/301 (35.55%), Postives = 177/301 (58.80%), Query Frame = 3
Query:    9 DSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVL--KRKCVEIKALET--AVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872
            D+ SK+  F    +ENR+F+A  D FV ++  ++   R   + + L    AV+IL +I  +      L+ LIL +  +   L++  L+++ G+   KI    VL+ +A+D+ESK  I+  + L++ +++L+ ++++ SL +A  S+L  I+ ++ V+  LI   +V  L++         S+TEK LKLL  +S+C EGRS I  +  C   +V KL+K+S   TE A+TVLWS C L KE++ ++AV++ NGVTKIL+++Q      V+ M  +L+K  +   +  CL  YETKTTHI P
Sbjct:  112 DARSKILRFARESDENREFLAGKDDFVAMLVDLISDSRNFSDSQLLLVGEAVKILSMIRRKIFDRRRLSNLILTNGGDC--LTSFFLLIKRGNPKLKIDCSAVLEFIAVDAESKLIIAKGEGLVTEIIKLISSDSDSSLIEANLSLLIAIASSKRVKLALIREKLVTKLTSLLTDPTTSVSVTEKCLKLLEAISSCKEGRSEI-CDGVCVETVVNKLMKVSTAATEHAVTVLWSVCYLFKEKKAQDAVIRINGVTKILLLLQSNCSLTVRHMLTDLLKVFKVNSRS-CLSVYETKTTHIMP 408          
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Match: PUB27_ARATH (U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.582e-21
Identity = 54/119 (45.38%), Postives = 75/119 (63.03%), Query Frame = 3
Query:  519 EKSLKLLATLSTCSEGRSAI-SSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872
            EK LKLL  L++  EGRS I   + +C   +V+KL+K+S   TE A+TVLWS   L KE++  EAV   NGVTKIL+++Q      V+ M  +L+K  +   +  CL +Y+TKTTHI P
Sbjct:  302 EKCLKLLEILASTKEGRSEICGGDGECLKTVVKKLMKVSTAATEHAVTVLWSVSYLFKEDKALEAVTSVNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVNSRS-CLSAYDTKTTHIMP 419          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A068VF12_COFCA2.370e-4639.86Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
I1KTF9_SOYBN6.503e-4641.14Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2RAI9_GLYSO6.708e-4641.14U-box domain-containing protein 27 OS=Glycine soja... [more]
A0A0D2P3Z5_GOSRA2.094e-4540.86Uncharacterized protein OS=Gossypium raimondii GN=... [more]
V7CRC1_PHAVU8.100e-4541.33Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PUB29_ARATH1.638e-3536.18U-box domain-containing protein 29 OS=Arabidopsis ... [more]
PUB28_ARATH7.656e-2935.55U-box domain-containing protein 28 OS=Arabidopsis ... [more]
PUB27_ARATH8.582e-2145.38U-box domain-containing protein 27 OS=Arabidopsis ... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 9..269
e-value: 3.9E-16
score: 57.9
NoneNo IPR availablePANTHERPTHR22849:SF12SUBFAMILY NOT NAMEDcoord: 1..287
NoneNo IPR availablePANTHERPTHR22849WDSAM1 PROTEINcoord: 1..287
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 71..267

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0007741 ID=g.arboreum_cottongen_reftransV1_0007741; Name=g.arboreum_cottongen_reftransV1_0007741; organism=Gossypium arboreum; type=contig; length=962bp
GCTGCGTCGATTCTTTGTCTAAGGTTGCCGAGTTCGTAAGCTGTTGCGAA
GAGAACCGGAAATTTGTAGCTAGATTCGACGGTTTCGTTGAGGTAATCGC
CGGAGTTTTGAAAAGGAAATGTGTGGAAATCAAAGCTTTGGAAACGGCGG
TTAGGATTTTGGATTTGATTTTGAGCGAAAATGGAGTCACAGAAGGGTTA
AACAAATTAATCCTTAAAAGCAATCAGGAAAGTAAATTTTTATCTGCAAT
CGTTTTAATTCTTCAACACGGAAGCCTGAACTCGAAGATCAAGTCAGTCC
GAGTTCTGGACTCACTAGCACTTGACTCGGAATCCAAACGCAGGATCTCC
GACTCACAAGACCTTATATCCATCCTTCTCCAGCTCCTGAAAACAAACAA
CAACGAATCCTTAAACGACGCCGTTACTTCCATTTTAACCACCATTTCAA
TAACGCGCTCCGTCAGATCCCGCCTCATCGAAAACGGCATCGTTGAAATC
CTATCAAACTCGCTCACAGAAAAGTCGTTGAAGTTGTTAGCAACGCTTAG
CACTTGCAGCGAAGGGAGGTCAGCAATCAGTTCCGAGCCAAAATGCGCGG
CGGCGATCGTAGAAAAGCTGTTGAAGTTGTCTAAAACGGGGACGGAGGAC
GCCCTAACGGTGTTGTGGAGCACGTGTTGCTTGAACAAAGAGGAGAGAGT
GAAAGAAGCGGTGGTAAAAGGGAATGGGGTGACGAAGATATTAGTAATAA
TGCAAAGAGAAGGGGAAGGGAACGTGAAGATGATGTGCAGGAATTTGGTT
AAGGCTCTAAGAGCTGTATGTAAAGATTGGTGTTTAGGCAGTTATGAAAC
CAAGACTACACATATTAGACCTTGTTGAGGAGCATTCTTTGTTTTTGGAC
ATAAATTTACGCACAAGATTCATGTAATTACCACTTAGTTCAAAGGAAAC
ACGATTCTATGT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding