g.arboreum_cottongen_reftransV1_0007741, g.arboreum_cottongen_reftransV1_0007741 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: F6HW89_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0166g00190 PE=4 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 2.871e-63 Identity = 143/297 (48.15%), Postives = 203/297 (68.35%), Query Frame = 3 Query: 12 SLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSL---------TEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKL-LKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 +L K+ ++ S +ENR+FVA DGFV V+AGVL I+ LE VRILDL++ E GV E + LILKSN++ LSAI+LIL+ GS +SKI S R+L+++A+D ESKR IS+ + L+S+LLQLL + + S D+V S L I++TR +++L+ +G+V+ L+ +L TEKS+KLL T+S C +G AI +P C AA+V+++ +KLS + EDA+TVLWS C LN++ + +EAV K G+TKIL++MQ NV+ MC +LVK R K CL SY+TKTTHI P Sbjct: 106 ALPKILDYASSSDENRRFVASLDGFVPVVAGVLGNAGAGIEILELVVRILDLVMVEKGVKEQIQGLILKSNRD--HLSAILLILEKGSSDSKIASARILEAIAIDPESKRSISEREGLLSVLLQLLSSQTDSSSLDSVLSCLIAITVTRQTKTQLVRSGLVQTLAKTLSTSNYPISTTEKSIKLLLTISNCRDGHQAICEDPICVAAVVQRMSMKLSSSAVEDAVTVLWSVCYLNRDSKAQEAVAKSTGLTKILLLMQTNCSANVRRMCCDLVKIFRVNSKS-CLASYDTKTTHITP 399
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: A0A059BSF7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02720 PE=4 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 4.356e-61 Identity = 136/305 (44.59%), Postives = 206/305 (67.54%), Query Frame = 3 Query: 3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKC-----VEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSLT---------EKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCK--DWCLGSYETKTTHIR 869 C +L K AEF S EENR+F+A DGFV + VL R EI+ LE AVR+L+ IL+ENGV E LNKL+L+S++ LS +V +L+ G L SKI +VR+LDS+A+D+ESKR I++++ +++ ++LL + +ESL D V +L +++ RS+++RL++ G+V ILS ++ E++L+L +ST +EGR A+S + A ++V +L+K S+ TEDA+ VLWS CC+ + RVKE V + G+TK+L++MQ E + VK MC +L+KALR+ C+ D + SYET+TTHIR Sbjct: 119 CCGALKKAAEFASYREENRRFLAGSDGFVAAVVRVLTRGGEGSSESEIEVLELAVRVLESILTENGVKERLNKLLLRSDR-GNCLSPMVSLLRSGRLASKIGAVRILDSIAVDNESKRSIAETEGVLAESIRLLVADTDESLRDVVLPLLIKLAVARSMKARLVQLGLVPILSGFISDQDSTGPTVERALRLTQMVSTVAEGRQAVSEDASLAGSLVGRLMKASRAATEDAVAVLWSVCCVCGDARVKERVARSGGMTKVLLVMQSEEDAGVKKMCSDLMKALRSGCETVDSGMVSYETRTTHIR 422
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: B9SJF8_RICCO (Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0136890 PE=4 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 3.623e-58 Identity = 137/303 (45.21%), Postives = 199/303 (65.68%), Query Frame = 3 Query: 9 DSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKC--VEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVE----ILSN-----SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGN-VKMMCRNLVKALRAVCKD--WCLGSYETKTTHIRPC 875 +SL K+ EF+ C + ++F+A D F+ + L + V+I +E +R+LDLIL +NGV E L++L L N S FL L++++G+L SKI+S+RVL+S++L + + L + +T NN S+NDAV S L ++++TRSV+++L + +VE ILSN S+ EKS+KLL+ ++TC++GR AIS +P CA IVE+L+K+SKT TED + VLWS CCL K+ERVKE VVK G+TK+L++MQ EG+GN + MC LVK LR KD + Y+TKTTHI PC Sbjct: 109 ESLVKIVEFLRCSDAKKRFLADCDLFIGSLVYTLAKDTGGVDIVVIELIIRVLDLILLQNGVKEKLHRL-LNHNCLSPFL----LVIKNGNLTSKIESIRVLESISLSNYHHTQTLIPILLDLL-----ETQNN-SVNDAVLSFLISVTVTRSVKTQLAQLKLVETISKILSNQNATVSVIEKSMKLLSIVATCADGRLAISEDPMCAGCIVERLMKVSKTATEDGVMVLWSLCCLFKDERVKEKVVKSKGLTKVLLVMQSEGDGNSARKMCVELVKVLRVAVKDNGGVVMCYDTKTTHIMPC 400
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: W9SPG5_9ROSA (U-box domain-containing protein 29 OS=Morus notabilis GN=L484_017896 PE=4 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 3.694e-57 Identity = 136/306 (44.44%), Postives = 201/306 (65.69%), Query Frame = 3 Query: 6 VDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXX--XXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSLT---------EKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQR---EGEGNVKMMCRNLVKALRAVCKD--WCLGSYETKTTHIRPC 875 + +LS +A+F +ENR+ +A FDGFV I GVL R +++ LE +RILD IL ++ E + LI K Q FL++I L+L++ SL +KI+S RVL S+A D +SKR IS L + L +++ +++L+DAV S L IS TRS +++L+ GIV +L+ +L+ E ++KLL+ +STC+EGRSAIS + +CAAA VE+L+K+S TEDA+ VLWS CCL E++ KE+VV+ NGV +IL++MQ EG V+ MC +L++ L+ C + LGSY++KTTHI PC Sbjct: 118 IGNLSSIADFAGFSDENRRSLADFDGFVSAIVGVLSRGGAKMEILELVIRILDSILLDDRGREQAHVLISKRIQ--AFLTSIRLVLRNASLKAKIESARVLRSIANDEQSKRAISDNRDLVLELLNLLTSESDYDQALHDAVYSCLIAISATRSKKAQLVGLGIVNLLARTLSDRNTNKSVAENAMKLLSIVSTCAEGRSAISEDRRCAAAAVERLMKVSTVATEDAVAVLWSVCCLLGEKKTKESVVRSNGVARILLVMQSGYCEGH-PVRRMCGDLLRVLKIGCSSDGFGLGSYQSKTTHILPC 420
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: F6I0G9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g00870 PE=4 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.634e-51 Identity = 123/299 (41.14%), Postives = 190/299 (63.55%), Query Frame = 3 Query: 3 CVDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEIL---------SNSLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 C++ +SK+ F EE+RKF+AR DGFV ++ L ALE VR+LD+I+SE+ + L +LKS+++ LS+I+L+LQ GS S+I S RVL+S+A+D+ESK I++ L S L++++ T + ++ ++ S L +S+ R +R +++ G+V+ L S S+TEK+LKLL S+C EG+S I C +AIV+K+LK+S T TE A+T+LWS C L++++R + V + NG+TKILV+MQ V+ + +L+K R K CL SY+TKTTHI P Sbjct: 116 CLECMSKIICFARESEESRKFLARIDGFVSLLVDFLGSGNANFLALEQVVRVLDMIISEHEDHKQLANSMLKSDRDC--LSSILLVLQQGSAESRIASARVLESIAIDAESKLLIAEKDGLFSELIRIMSTETDPTMIESTLSCLIAVSMPRRIRPKIVRLGVVKQLTKLLSDPNWSVSVTEKALKLLEMASSCKEGKSEICENSDCVSAIVQKMLKVSSTATEHAVTILWSVCYLSRDDRAQSTVTQNNGLTKILVLMQSNCSPAVRQLAGDLLKIFRVSSKS-CLSSYDTKTTHIMP 411
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: Q9AR60_SOLTU (Photoperiod responsive protein OS=Solanum tuberosum subsp. andigenum GN=phor1 PE=2 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 4.238e-51 Identity = 134/304 (44.08%), Postives = 189/304 (62.17%), Query Frame = 3 Query: 6 VDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVE----ILSNSLT-----EKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAV---CKDW---CLGSYETKTTHIRP 872 + SL+K+ EFV C ENR+F + + GVL C + E V +LDL++SENGV E LNK ILKS++ KFL +LIL+ G L+S+I++ R+L+ +ALD++S+R++ + Q L+ L T N +A S L +S TR + L+ GIV+ ILS S T EKSLKLL T++TC+EGR+AI +C +AIV +L+K SK TE +TVLWS CCL ++ ++ V K NG+TK+L++MQ + V+ MC LVKALR V K++ CL SY+TKTTHI P Sbjct: 117 LSSLAKIVEFVKCSGENRRFFVNSSDAIVSVVGVLV-DCDVGEVCEAVVAVLDLVVSENGVKEQLNKEILKSDR--KFLPKFLLILRKGKLSSRIQTARILEFIALDADSQRKMIEEQGLLYELHVFTSTETNRFAIEAGLSTLIAVSTTRPAKKELVRFGIVQTIGKILSGSETARAVVEKSLKLLETVATCTEGRAAIVKGEECMSAIVTRLMKSSKAATEHGVTVLWSVCCLFRDTAARDVVGKANGLTKVLLVMQSDCSAAVRQMCGELVKALRVVNNKHKNYSKSCLASYDTKTTHIMP 417
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: V7C442_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G098600g PE=4 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 6.419e-51 Identity = 127/300 (42.33%), Postives = 189/300 (63.00%), Query Frame = 3 Query: 12 SLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSL--------TEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKD----WCLGSYETKTTHIRPC 875 +LSK+AEF + ENR+ +A F GF I L I E A+ +LD +L +NG E + +LIL + Q+ +++ +L++GS SKI++VRVL+ LA D +S + I ++Q L+S L LK + E L DAV L +S+TRS + L+ G+VE++S L E+ L++LA ++TC+EGR+A+ +EP CAAA+VE++ K +K EDA+ VLWS CCL+ +V++ V K NGV IL+ MQR E +V+ MC +L+K L+ CK+ LGSY+TKTTHI+PC Sbjct: 111 TLSKIAEFATSSAENRRKLASFPGFDAAIVRALAGCSSRIDVSENAIYLLDSVLRQNGNPEKIRRLILDARQQC--FDSMLFVLRNGSAKSKIETVRVLEFLARDFQSSKSIVETQGLLSSLAGFLK-DGGEELRDAVLLFLGVVSVTRSAKVELVNCGVVELVSKLLQECSSAKTAERCLRVLAVVATCAEGRAAMVAEPSCAAAVVERVTKAAKAAAEDAVMVLWSLCCLSGNVKVRDDVAKRNGVAVILLAMQRGWEEHVRSMCVDLIKVLKGACKNNGLGLELGSYDTKTTHIKPC 407
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: M0ZJK6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000791 PE=4 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 1.085e-50 Identity = 134/304 (44.08%), Postives = 188/304 (61.84%), Query Frame = 3 Query: 6 VDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVE----ILSNSLT-----EKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVC---KDW---CLGSYETKTTHIRP 872 + SL+K+ EFV C ENR+F + + GVL C ++ E V +LDL++SEN V E LNK ILKS++ KFL +LIL+ G L+S+I++ R+L+ +ALD++S+R++ + Q L+ L T N +A S L +S TR + L+ GIV+ ILS S T EKSLKLL T++TC+EGRSAI +C + IV +L+K SK TE +TVLWS CCL ++ +E V K NG+TK+L++MQ + V+ MC LVKALR V K++ CL SY+TKTTHI P Sbjct: 117 LSSLAKIVEFVKCSGENRRFFVNLSDAIVSVVGVLV-DCDVVEVCEAVVAVLDLVVSENEVKEQLNKEILKSDR--KFLPKFLLILRKGKLSSRIQTARILEFIALDADSQRKMVEEQGLLYELHVFTSTETNRFAIEAGLSTLIAVSTTRPAKKELVRFGIVQTIGKILSGSETARAVVEKSLKLLETVATCTEGRSAIGKGEECLSVIVTRLMKSSKAATEHGVTVLWSVCCLFRDTEAREVVGKANGLTKVLLVMQSDCSAGVRQMCGELVKALRVVNNKDKNYSKSCLASYDTKTTHIMP 417
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: K4BT95_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g071030.1 PE=4 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 3.515e-50 Identity = 133/313 (42.49%), Postives = 188/313 (60.06%), Query Frame = 3 Query: 6 VDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVE----ILSNSLT-----EKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAV------------CKDW---CLGSYETKTTHIRP 872 + SL+K+ EFV C ENR F + I GVL C ++ E V +LDL++SENGV E LNK ILKS+Q KFL +L+L+ G L+S+I++ R+L+ +ALD++S+R++ + Q L+ L T N + S L +S TR + L+ GI++ ILS+S T EKSLKLL T++TC+EGR+AI +C +AIV +L+K SK TE +TVLWS CCL + +E V K NG+TK+L++MQ + V+ MC LVKALR V K++ CL SY+T+TTHI P Sbjct: 117 LSSLAKIGEFVKCSGENRSFFVNLSDAIANIVGVLV-DCDVVEVCEAVVAVLDLVVSENGVKEQLNKEILKSDQ--KFLPKFLLVLRKGKLSSRIQTARILEFIALDADSQRKMVEEQGLLYELHVFTSTETNRFAIEVGLSTLIAVSTTRLAKKELVRFGIIQTIGKILSDSETARAVVEKSLKLLETVATCAEGRTAIGKGEECLSAIVTRLMKSSKAATEHGVTVLWSVCCLFRHTAAREVVGKANGLTKVLLVMQSDCSAAVRQMCGELVKALRVVNTFSVRTEEVIKIKNYSKSCLASYDTQTTHIMP 426
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Match: I1MPA0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 2.030e-46 Identity = 124/299 (41.47%), Postives = 190/299 (63.55%), Query Frame = 3 Query: 15 LSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEG--LNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSNSL-------TEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWC---LGSYETKTTHIRPC 875 LSK+AEF ENR+ +A F GF + L I E A+ +L + ENG + G + KLIL + ++ A++ +L++GSL SKI++V+VL+ LA D +S + IS++ L+S+L LK + E +NDAV S+L +S+T S + L+ +G+VE+++ L E+ L++LA L+TC+EGR+A++ EP CAAA+VE++ K SK DA+ VLWS CCL + +V++ V K NGV +L++MQR E +V+ MC +L+K L+ CK+ LG Y+TKTTHI+PC Sbjct: 119 LSKIAEFAKKSGENRRSLAAFPGFDSAVVRALAGSNSLIDVAENAIYLLGSVFRENGKSTGERIRKLILDAREQC--FDAMIFVLRNGSLKSKIETVKVLEFLACDFQSSKSISEACGLLSLLASFLK-DGGEEINDAVLSLLGVVSVTHSAKVELVSSGVVEVVTKLLRACSAATAERCLRMLAVLATCAEGRAAMAEEPSCAAAVVERITKASKAAAADAVAVLWSLCCLCRNVKVRDEVAKRNGVVVVLLVMQRGWEEHVRSMCVDLIKVLKGACKNGLGLELGCYDTKTTHIKPC 414
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Match: PUB29_ARATH (U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.638e-35 Identity = 110/304 (36.18%), Postives = 180/304 (59.21%), Query Frame = 3 Query: 6 VDSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVLKRKCVEIKALETAVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXX--XXXXXXXXXXXKTNNNESLNDAXXXXXXXXXX---------XXXXXXXXXENGIVEILSN-SLTEKSLKLLATLSTCSEGRSAISSEP--KCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEER-VKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 +++L K+ FV + NR+F+++ FV ++ +++ K +I+ + A+RILD I + E L+ L+L +N L+AI+L +Q G+L SKI+SVRVLD ++ D++SK I++ + + +++ SL +A S L TIS +++ + + E L+N ++TEKSLKLL TLS+ EGR I + +C +V+KLLK+S T TE A+T+LW C + +E++ V+E V + NGVTK+LV++Q V+ M ++L+K L+ L +YETKTTHI P Sbjct: 117 LENLMKIVRFVKDSDSNREFLSKKMEFVPMLVDIIRTKKTKIELVIMAIRILDSIKVDR---ERLSNLML-ANDGGDCLTAILLAIQRGNLESKIESVRVLDWISFDAKSKLMIAERDGVLTEMMKSISITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLTNVAVTEKSLKLLETLSSKREGRLEICGDDNGRCVEGVVKKLLKVSTTATEHAVTILWCLCYVFREDKTVEETVERSNGVTKLLVVIQSNCSAMVRQMAKDLIKVLK--FNSSALAAYETKTTHIMP 414
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Match: PUB28_ARATH (U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 7.656e-29 Identity = 107/301 (35.55%), Postives = 177/301 (58.80%), Query Frame = 3 Query: 9 DSLSKVAEFVSCCEENRKFVARFDGFVEVIAGVL--KRKCVEIKALET--AVRILDLILSENGVTEGLNKLILKSNQESKFLSAIVLILQHGSLNSKIKSVRVLDSLALDSESKRRXXXXXXXXXXXXXXXKTNNNESLNDAXXXXXXXXXXXXXXXXXXXENGIVEILSN---------SLTEKSLKLLATLSTCSEGRSAISSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 D+ SK+ F +ENR+F+A D FV ++ ++ R + + L AV+IL +I + L+ LIL + + L++ L+++ G+ KI VL+ +A+D+ESK I+ + L++ +++L+ ++++ SL +A S+L I+ ++ V+ LI +V L++ S+TEK LKLL +S+C EGRS I + C +V KL+K+S TE A+TVLWS C L KE++ ++AV++ NGVTKIL+++Q V+ M +L+K + + CL YETKTTHI P Sbjct: 112 DARSKILRFARESDENREFLAGKDDFVAMLVDLISDSRNFSDSQLLLVGEAVKILSMIRRKIFDRRRLSNLILTNGGDC--LTSFFLLIKRGNPKLKIDCSAVLEFIAVDAESKLIIAKGEGLVTEIIKLISSDSDSSLIEANLSLLIAIASSKRVKLALIREKLVTKLTSLLTDPTTSVSVTEKCLKLLEAISSCKEGRSEI-CDGVCVETVVNKLMKVSTAATEHAVTVLWSVCYLFKEKKAQDAVIRINGVTKILLLLQSNCSLTVRHMLTDLLKVFKVNSRS-CLSVYETKTTHIMP 408
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Match: PUB27_ARATH (U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 8.582e-21 Identity = 54/119 (45.38%), Postives = 75/119 (63.03%), Query Frame = 3 Query: 519 EKSLKLLATLSTCSEGRSAI-SSEPKCAAAIVEKLLKLSKTGTEDALTVLWSTCCLNKEERVKEAVVKGNGVTKILVIMQREGEGNVKMMCRNLVKALRAVCKDWCLGSYETKTTHIRP 872 EK LKLL L++ EGRS I + +C +V+KL+K+S TE A+TVLWS L KE++ EAV NGVTKIL+++Q V+ M +L+K + + CL +Y+TKTTHI P Sbjct: 302 EKCLKLLEILASTKEGRSEICGGDGECLKTVVKKLMKVSTAATEHAVTVLWSVSYLFKEDKALEAVTSVNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVNSRS-CLSAYDTKTTHIMP 419 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0007741 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0007741 ID=g.arboreum_cottongen_reftransV1_0007741; Name=g.arboreum_cottongen_reftransV1_0007741; organism=Gossypium arboreum; type=contig; length=962bpback to top |