g.arboreum_cottongen_reftransV1_0012086, g.arboreum_cottongen_reftransV1_0012086 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: A0A0D2SQP1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G245000 PE=4 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 5.031e-64 Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 304 +KKHAEE+RIKSARGREKSSDDIF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS Sbjct: 25 KKKHAEEERIKSARGREKSSDDIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 125
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: A0A061DJX8_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_001262 PE=4 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 6.590e-62 Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 304 +K+ AEEQRIKSARGREKSSDDIF+CERVCTSKRMLKKVGAFSKDPI DTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS Sbjct: 64 KKRRAEEQRIKSARGREKSSDDIFVCERVCTSKRMLKKVGAFSKDPIRDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 164
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: A0A061DJ25_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_001262 PE=4 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 1.708e-61 Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 304 +K+ AEEQRIKSARGREKSSDDIF+CERVCTSKRMLKKVGAFSKDPI DTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS Sbjct: 25 KKRRAEEQRIKSARGREKSSDDIFVCERVCTSKRMLKKVGAFSKDPIRDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 125
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: A0A0A0KJ71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486990 PE=4 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 4.215e-60 Identity = 88/101 (87.13%), Postives = 101/101 (100.00%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 304 +++H+EEQRIK+ARGREK+SDDIF+CERVCTSKRMLKKVG+FSKDPIPDTCVTVCG+SELDAC+DACARTVCVNQHQVPNWND+CLRRCQSECL+LSAS+S Sbjct: 25 KRRHSEEQRIKTARGREKNSDDIFVCERVCTSKRMLKKVGSFSKDPIPDTCVTVCGLSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLKLSASYS 125
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: W9SAI8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008327 PE=4 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 5.304e-60 Identity = 89/101 (88.12%), Postives = 100/101 (99.01%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 304 +KKHAEEQR++SARGREK++D+IF+CERVCTSKRMLK+VGAFSKDPIPDTCVTVCG+SELDAC+DACARTVCVNQHQVPNWNDICLRRCQSECL+LSAS S Sbjct: 24 KKKHAEEQRLQSARGREKTADEIFVCERVCTSKRMLKRVGAFSKDPIPDTCVTVCGISELDACADACARTVCVNQHQVPNWNDICLRRCQSECLKLSASRS 124
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: M1D319_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031197 PE=4 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 6.233e-60 Identity = 90/99 (90.91%), Postives = 98/99 (98.99%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSAS 298 R+ HAEEQRIKSARGREKS+DDIF+CERVCTSKRMLKKVGAFSKDPIPDTC+TVCGVSELDACSDACARTVCVNQHQVPNWND+CLRRCQSECL+LS++ Sbjct: 25 RRNHAEEQRIKSARGREKSTDDIFVCERVCTSKRMLKKVGAFSKDPIPDTCITVCGVSELDACSDACARTVCVNQHQVPNWNDVCLRRCQSECLKLSSN 123
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: A0A0B0NIZ7_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_18594 PE=4 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 9.537e-60 Identity = 91/101 (90.10%), Postives = 100/101 (99.01%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 304 +K+HAE+Q+IKSARGREK++DD+F+CERVCTSKRMLKKVGAFSKDPI DTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSAS+S Sbjct: 25 KKRHAEDQKIKSARGREKTADDVFVCERVCTSKRMLKKVGAFSKDPIRDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASNS 125
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: K4BSD0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g051710.1 PE=4 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 1.622e-59 Identity = 89/99 (89.90%), Postives = 98/99 (98.99%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSAS 298 ++ HAEEQRIKSARGREKS+DDIF+CERVCTSKRMLKKVGAFSKDPIPDTC+TVCGVSELDACSDACARTVCVNQHQVPNWND+CLRRCQSECL+LS++ Sbjct: 25 KRNHAEEQRIKSARGREKSTDDIFVCERVCTSKRMLKKVGAFSKDPIPDTCITVCGVSELDACSDACARTVCVNQHQVPNWNDVCLRRCQSECLKLSSN 123
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: A0A0D2T6G8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G114100 PE=4 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 1.696e-59 Identity = 90/101 (89.11%), Postives = 100/101 (99.01%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 304 +K+HAE+Q++KSARGREK++DD+F+CERVCTSKRMLKKVGAFSKDPI DTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSAS+S Sbjct: 25 KKRHAEDQKVKSARGREKTADDVFVCERVCTSKRMLKKVGAFSKDPIRDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASNS 125
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: A0A067KGP3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09421 PE=4 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 4.134e-59 Identity = 90/100 (90.00%), Postives = 97/100 (97.00%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASH 301 +KK AEEQR+KS RGREKSSDD+F+CERVCTSKRMLKKVGAFSKDPIPD C+TVCGVSELDACSDACARTVCVNQHQVP+WNDICLRRCQSECL+LSASH Sbjct: 26 KKKRAEEQRMKSIRGREKSSDDVFVCERVCTSKRMLKKVGAFSKDPIPDNCLTVCGVSELDACSDACARTVCVNQHQVPDWNDICLRRCQSECLKLSASH 125
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy Swiss-Prot
Match: Y5486_ARATH (Uncharacterized protein At5g64816 OS=Arabidopsis thaliana GN=At5g64816 PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 3.110e-59 Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRL 289 +K+H EE+RIKSARGREKSSD+IF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQV NWNDICLRRCQSECL+L Sbjct: 25 KKRHGEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKL 120 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0012086 ID=g.arboreum_cottongen_reftransV1_0012086; Name=g.arboreum_cottongen_reftransV1_0012086; organism=Gossypium arboreum; type=contig; length=504bpback to top |