g.arboreum_cottongen_reftransV1_0012086, g.arboreum_cottongen_reftransV1_0012086 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: R0GBX8_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10027305mg PE=4 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 3.577e-56 Identity = 87/96 (90.62%), Postives = 93/96 (96.88%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRL 289 +K+ EE+RIKSARGREKSSD+IF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQV NWNDICLRRCQSECL+L Sbjct: 49 KKRRGEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKL 144
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: I1LCE8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 3.611e-56 Identity = 87/102 (85.29%), Postives = 99/102 (97.06%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSA-SHS 304 +K+ AEEQR++SARGRE+SSD+IF+CERVCTSKRMLKKVG+FSKDPIPDTCVTVCG S+LDAC+DACARTVCVNQHQVPNWNDICLRRCQSECL+LS+ SHS Sbjct: 25 KKRRAEEQRLQSARGRERSSDEIFVCERVCTSKRMLKKVGSFSKDPIPDTCVTVCGASDLDACADACARTVCVNQHQVPNWNDICLRRCQSECLKLSSQSHS 126
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: A0A072VML2_MEDTR (Thionin-like protein OS=Medicago truncatula GN=MTR_1g073620 PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 3.697e-56 Identity = 85/101 (84.16%), Postives = 98/101 (97.03%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSASHS 304 +K++AEEQR+KSARGRE+SSD+IF+CERVCTSKRMLKKVG+FSKDPIPDTCVTVCGVS+LDAC++ACARTVCVNQHQVPNWND CLRRCQSECL+LS+ S Sbjct: 25 KKRNAEEQRLKSARGRERSSDEIFVCERVCTSKRMLKKVGSFSKDPIPDTCVTVCGVSDLDACAEACARTVCVNQHQVPNWNDTCLRRCQSECLKLSSQSS 125
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: B9SN04_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0482930 PE=4 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 5.396e-56 Identity = 88/99 (88.89%), Postives = 94/99 (94.95%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRLSAS 298 +KK AEEQR+KSARGREKSSD+IF+CERVCTSKRMLKKVGA SKDP DTCVTVCGVSELDAC+DACARTVCVNQHQVPNWND+CLRRCQSECLRLS S Sbjct: 25 KKKRAEEQRLKSARGREKSSDEIFVCERVCTSKRMLKKVGALSKDPTIDTCVTVCGVSELDACTDACARTVCVNQHQVPNWNDVCLRRCQSECLRLSDS 123
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Match: A0A078FNR1_BRANA (BnaC03g49450D protein OS=Brassica napus GN=BnaC03g49450D PE=4 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 6.408e-56 Identity = 87/96 (90.62%), Postives = 93/96 (96.88%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRL 289 +K+ EE+RIKSARGREKSSD+IF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQV NWNDICLRRCQSECL+L Sbjct: 25 KKRRGEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKL 120
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy Swiss-Prot
Match: Y5486_ARATH (Uncharacterized protein At5g64816 OS=Arabidopsis thaliana GN=At5g64816 PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 3.110e-59 Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 2 Query: 2 RKKHAEEQRIKSARGREKSSDDIFICERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVPNWNDICLRRCQSECLRL 289 +K+H EE+RIKSARGREKSSD+IF+CERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQV NWNDICLRRCQSECL+L Sbjct: 25 KKRHGEEERIKSARGREKSSDEIFVCERVCTSKRMLKKVGAFSKDPIPDTCVTVCGVSELDACSDACARTVCVNQHQVANWNDICLRRCQSECLKL 120 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0012086 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0012086 ID=g.arboreum_cottongen_reftransV1_0012086; Name=g.arboreum_cottongen_reftransV1_0012086; organism=Gossypium arboreum; type=contig; length=504bpback to top |