g.arboreum_cottongen_reftransV1_0013393, g.arboreum_cottongen_reftransV1_0013393 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: A0A0D2S891_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G228300 PE=4 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 2.079e-55 Identity = 149/160 (93.12%), Postives = 150/160 (93.75%), Query Frame = -2 Query: 3 MTTHSLASLHHQYSFLKRXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 476 MTTHSLASLHHQYSFLKRLSNSESI LPPSSL P SSSSSSTT TTSSTTTTFSLSPTTSSSTPTT+NPISFD LKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK Sbjct: 1 MTTHSLASLHHQYSFLKRLSNSESIHLPPSSLFLHPSPSSSSSSSSTTTTTSSTTTTFSLSPTTSSSTPTTTNPISFDNLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 160
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: A0A061EJ50_THECC (Enzyme binding,tetrapyrrole binding OS=Theobroma cacao GN=TCM_020047 PE=4 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 2.326e-41 Identity = 72/83 (86.75%), Postives = 78/83 (93.98%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251 D L+HHLSTQNF QADEETRRLLIVLAGEAA+KR YVFFSEVQFISEADL AID+LWKQYS+N+FGYSVQKRLWQK +KDFTK Sbjct: 72 DALQHHLSTQNFRQADEETRRLLIVLAGEAAEKRGYVFFSEVQFISEADLIAIDDLWKQYSSNRFGYSVQKRLWQKVDKDFTK 154
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: B9T5C4_RICCO (Tetrapyrrole-binding protein, chloroplast, putative OS=Ricinus communis GN=RCOM_0655990 PE=4 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 9.764e-40 Identity = 72/84 (85.71%), Postives = 76/84 (90.48%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLW-QKANKDFTK 251 D L+ HLS QNF QADEETRRLLIVLAGEA QKR YVFFSEVQFISE DLKAIDELWK+YSNNKFGYS+QKR+W QKANKDFTK Sbjct: 78 DLLQQHLSAQNFRQADEETRRLLIVLAGEATQKRGYVFFSEVQFISENDLKAIDELWKKYSNNKFGYSIQKRIWQQKANKDFTK 161
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: A0A0D2VM76_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G142800 PE=4 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.436e-39 Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251 DTL+HHLS QNF QADEETRRLLI+LAGEAAQKR YVFFSEVQFIS+ DLKAIDELWK++S+NKFGYSVQKR WQK KDFTK Sbjct: 79 DTLQHHLSNQNFRQADEETRRLLILLAGEAAQKRGYVFFSEVQFISQNDLKAIDELWKKHSDNKFGYSVQKRQWQKVKKDFTK 161
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: A0A067L5U3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20841 PE=4 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 8.774e-39 Identity = 69/84 (82.14%), Postives = 79/84 (94.05%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLW-QKANKDFTK 251 D L+HHLSTQNF QADEETRRLLI+LAGEAAQKR YVFFSEVQFISE DLKAIDELWK+YS+NKFGYS+QK++W +KA+KDF+K Sbjct: 79 DLLQHHLSTQNFRQADEETRRLLIILAGEAAQKRGYVFFSEVQFISEEDLKAIDELWKKYSDNKFGYSIQKQIWLKKADKDFSK 162
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: V4U2B7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021505mg PE=4 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 3.271e-38 Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251 D L HL QNF QADEETRRLLI LAGEAA+KR YVFFSEVQFI+EADLKAIDELW+QYS+NKFGYSVQK++W+K NKDFTK Sbjct: 99 DLLHQHLQAQNFRQADEETRRLLIALAGEAAEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTK 181
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: B9HH58_POPTR (Tetrapyrrole-binding family protein OS=Populus trichocarpa GN=POPTR_0007s02000g PE=4 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 4.602e-38 Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = -2 Query: 3 LKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLW-QKANKDFTK 245 L+ HLS QNF +ADEETRRLLIVLAGEAAQKR YVFFSEVQFI E DLK IDELWK+YSNNKFGYSVQKR+W QK NKDFTK Sbjct: 78 LQQHLSNQNFREADEETRRLLIVLAGEAAQKRGYVFFSEVQFIPEQDLKDIDELWKKYSNNKFGYSVQKRIWRQKGNKDFTK 159
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: A5BEZ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00310 PE=4 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 4.618e-38 Identity = 65/83 (78.31%), Postives = 76/83 (91.57%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251 D L+ HLS++N+ QADEETRRLLIVLAGEAA KR YVFFSEVQFI EADLKAIDELW+Q+SNNKFGYSVQ+R+W+K NKDF++ Sbjct: 83 DVLQQHLSSKNYRQADEETRRLLIVLAGEAAVKRGYVFFSEVQFIPEADLKAIDELWRQHSNNKFGYSVQRRIWEKVNKDFSR 165
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: U7DWM1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_2108s00210g PE=4 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 5.326e-38 Identity = 70/84 (83.33%), Postives = 74/84 (88.10%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQ-KANKDFTK 251 D L+ HLS QNF +ADEETRRLLIVLAGEAAQ R YVFFSEVQFISE DLK IDELWK +SNNKFGYSVQKR+WQ KANKDFTK Sbjct: 79 DLLQQHLSNQNFREADEETRRLLIVLAGEAAQTRGYVFFSEVQFISEEDLKDIDELWKNHSNNKFGYSVQKRIWQLKANKDFTK 162
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: U5FKC2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s05900g PE=4 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 5.775e-38 Identity = 70/84 (83.33%), Postives = 74/84 (88.10%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQ-KANKDFTK 251 D L+ HLS QNF +ADEETRRLLIVLAGEAAQ R YVFFSEVQFISE DLK IDELWK +SNNKFGYSVQKR+WQ KANKDFTK Sbjct: 77 DLLQQHLSNQNFREADEETRRLLIVLAGEAAQTRGYVFFSEVQFISEEDLKDIDELWKNHSNNKFGYSVQKRIWQLKANKDFTK 160
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: GUN4C_ARATH (Tetrapyrrole-binding protein, chloroplastic OS=Arabidopsis thaliana GN=GUN4 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 2.353e-29 Identity = 53/83 (63.86%), Postives = 67/83 (80.72%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251 D L++HL QNF QADEETRRLLI ++GEAA KR YVFFSEV+ IS DL+AID LW ++S+ +FGYSVQ+++W K KDFT+ Sbjct: 82 DVLENHLVNQNFRQADEETRRLLIQISGEAAVKRGYVFFSEVKTISPEDLQAIDNLWIKHSDGRFGYSVQRKIWLKVKKDFTR 164
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YC53L_SYNY3 (Ycf53-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0558 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.511e-16 Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = -2 Query: 3 LKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 245 L+ L +Q+F ADE TR L LAG A +R++++F+EV+ DL I+ LW +SN FG+SVQ+RLW + K+FTK Sbjct: 96 LQEALGSQDFETADEITRDKLCELAGPGASQRQWLYFTEVEKFPALDLHTINALWWLHSNGNFGFSVQRRLWLASGKEFTK 176
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YCF53_CYACA (Uncharacterized protein ycf53 OS=Cyanidium caldarium GN=ycf53 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.110e-13 Identity = 29/74 (39.19%), Postives = 54/74 (72.97%), Query Frame = -2 Query: 30 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLW 251 +TL+ LS NFF+A++ T+++L+ LAGE +++R +++F++V I+ + ++ LW+ YS FG+S+QKR+W Sbjct: 103 ETLESLLSANNFFEANKFTQQILLELAGEQSKQRNWMYFTDVHSINHQSVSDLNHLWELYSQGNFGFSIQKRIW 176
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YCF53_PYRYE (Uncharacterized protein ycf53 OS=Pyropia yezoensis GN=ycf53 PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 4.658e-12 Identity = 31/81 (38.27%), Postives = 53/81 (65.43%), Query Frame = -2 Query: 3 LKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 245 L+ L+ ++ +AD+ T++ LI LAG AQ R +++F++++ I DL+ ID+LW +S KFG VQ+++W KD+ K Sbjct: 102 LQMLLTHRDLLKADQLTQQKLIQLAGVNAQTRNWLYFTDIKKIPAQDLQTIDKLWHTHSKGKFGLFVQRQIWLSVGKDWGK 182
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YCF53_PORPU (Uncharacterized protein ycf53 OS=Porphyra purpurea GN=ycf53 PE=3 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 1.110e-9 Identity = 27/75 (36.00%), Postives = 47/75 (62.67%), Query Frame = -2 Query: 9 LSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDF 233 L N AD+ T++ LI LAG + R +++F++++ I DL+ ID+LW +S KFG+ VQ+++W K++ Sbjct: 107 LVQNNLIAADKLTQQKLIKLAGVDEKSRNWLYFTDIKKIPVEDLQTIDQLWNAHSKGKFGFFVQRQIWLALEKNW 181 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to top
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 5
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0013393 ID=g.arboreum_cottongen_reftransV1_0013393; Name=g.arboreum_cottongen_reftransV1_0013393; organism=Gossypium arboreum; type=contig; length=531bpback to top Annotated Terms
The
following terms have been associated with
this contig:
|