g.arboreum_cottongen_reftransV1_0013393, g.arboreum_cottongen_reftransV1_0013393 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: K7ZBK0_9GENT (Tetrapyrrole-binding protein (Fragment) OS=Galium verum f. pusillum PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 3.920e-32 Identity = 57/82 (69.51%), Postives = 71/82 (86.59%), Query Frame = -2 Query: 6 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFT 251 D L+ HLS+QNF +ADEETRRLLI LAGEAA KR YVFF EV+FI E+DLKAIDELW++YS+ KFGYSVQ+++W+K N +F+ Sbjct: 78 DVLEQHLSSQNFREADEETRRLLIALAGEAAVKRGYVFFPEVKFIPESDLKAIDELWRKYSDGKFGYSVQRKVWKKLNCNFS 159
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: M0TWU2_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 6.684e-32 Identity = 56/83 (67.47%), Postives = 69/83 (83.13%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251 D L HLS+ +F QADEETRRLLI LAGEAAQKR YVFFSEVQFI ADL+ ID+LW+++S +FGY VQ+RLW+K+ +DFT+ Sbjct: 92 DVLASHLSSSDFRQADEETRRLLIALAGEAAQKRGYVFFSEVQFIPAADLQEIDQLWRRHSGGRFGYGVQRRLWEKSGRDFTR 174
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: W9S611_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002377 PE=4 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.421e-31 Identity = 57/83 (68.67%), Postives = 71/83 (85.54%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251 D L+ HL+ +F QADEETRRLLI LAG+AAQKR YVFFSEVQ+I+E+DLKAIDELW+ +S+ KFGYSVQK+++ K N DFT+ Sbjct: 73 DLLRSHLAAGDFRQADEETRRLLIALAGDAAQKRGYVFFSEVQYITESDLKAIDELWRTFSDGKFGYSVQKKIFNKVNNDFTR 155
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: I3SZB3_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.488e-31 Identity = 58/82 (70.73%), Postives = 71/82 (86.59%), Query Frame = -2 Query: 6 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFT 251 D L+ LS +NF +AD+ETRRLLI LAGE A KR YVFFSEVQFISE DLKAIDELW+++S+N+FGYSVQKR+++K +KDFT Sbjct: 82 DLLRELLSARNFREADDETRRLLIALAGEPAIKRGYVFFSEVQFISETDLKAIDELWREHSDNRFGYSVQKRIFEKVDKDFT 163
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: S8DZL8_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_05972 PE=4 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.836e-31 Identity = 56/83 (67.47%), Postives = 69/83 (83.13%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251 + L+ LS N+ QADEETRRLLIVLAG+AA KR YVFFSEVQFISE DL+ ID LW QYS+N+FGY QK++W+K+N+DF+K Sbjct: 14 ELLEELLSAGNYRQADEETRRLLIVLAGDAAVKRGYVFFSEVQFISEEDLREIDRLWAQYSDNRFGYRAQKQIWEKSNRDFSK 96
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: GUN4C_ARATH (Tetrapyrrole-binding protein, chloroplastic OS=Arabidopsis thaliana GN=GUN4 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 2.353e-29 Identity = 53/83 (63.86%), Postives = 67/83 (80.72%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251 D L++HL QNF QADEETRRLLI ++GEAA KR YVFFSEV+ IS DL+AID LW ++S+ +FGYSVQ+++W K KDFT+ Sbjct: 82 DVLENHLVNQNFRQADEETRRLLIQISGEAAVKRGYVFFSEVKTISPEDLQAIDNLWIKHSDGRFGYSVQRKIWLKVKKDFTR 164
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YC53L_SYNY3 (Ycf53-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0558 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.511e-16 Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = -2 Query: 3 LKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 245 L+ L +Q+F ADE TR L LAG A +R++++F+EV+ DL I+ LW +SN FG+SVQ+RLW + K+FTK Sbjct: 96 LQEALGSQDFETADEITRDKLCELAGPGASQRQWLYFTEVEKFPALDLHTINALWWLHSNGNFGFSVQRRLWLASGKEFTK 176
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YCF53_CYACA (Uncharacterized protein ycf53 OS=Cyanidium caldarium GN=ycf53 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.110e-13 Identity = 29/74 (39.19%), Postives = 54/74 (72.97%), Query Frame = -2 Query: 30 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLW 251 +TL+ LS NFF+A++ T+++L+ LAGE +++R +++F++V I+ + ++ LW+ YS FG+S+QKR+W Sbjct: 103 ETLESLLSANNFFEANKFTQQILLELAGEQSKQRNWMYFTDVHSINHQSVSDLNHLWELYSQGNFGFSIQKRIW 176
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YCF53_PYRYE (Uncharacterized protein ycf53 OS=Pyropia yezoensis GN=ycf53 PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 4.658e-12 Identity = 31/81 (38.27%), Postives = 53/81 (65.43%), Query Frame = -2 Query: 3 LKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 245 L+ L+ ++ +AD+ T++ LI LAG AQ R +++F++++ I DL+ ID+LW +S KFG VQ+++W KD+ K Sbjct: 102 LQMLLTHRDLLKADQLTQQKLIQLAGVNAQTRNWLYFTDIKKIPAQDLQTIDKLWHTHSKGKFGLFVQRQIWLSVGKDWGK 182
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YCF53_PORPU (Uncharacterized protein ycf53 OS=Porphyra purpurea GN=ycf53 PE=3 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 1.110e-9 Identity = 27/75 (36.00%), Postives = 47/75 (62.67%), Query Frame = -2 Query: 9 LSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDF 233 L N AD+ T++ LI LAG + R +++F++++ I DL+ ID+LW +S KFG+ VQ+++W K++ Sbjct: 107 LVQNNLIAADKLTQQKLIKLAGVDEKSRNWLYFTDIKKIPVEDLQTIDQLWNAHSKGKFGFFVQRQIWLALEKNW 181 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 5
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0013393 ID=g.arboreum_cottongen_reftransV1_0013393; Name=g.arboreum_cottongen_reftransV1_0013393; organism=Gossypium arboreum; type=contig; length=531bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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