g.arboreum_cottongen_reftransV1_0013393, g.arboreum_cottongen_reftransV1_0013393 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: A0A067E0D7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023340mg PE=4 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 3.588e-37 Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = -2 Query: 6 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFT 251 D L HL QNF QADEETRRLLI LAGEA++KR YVFFSEVQFI+EADLKAIDELW+QYS+NKFGYSVQK++W+K NKDFT Sbjct: 95 DLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFT 176
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: M5Y2H3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024953mg PE=4 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 5.652e-36 Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251 D L+ HLSTQNF +ADEETRRLLIVLAGE AQKR YVFFSE QFISEADLKAID+LW+Q+SNNKFGYSVQ++++ K + DFTK Sbjct: 54 DLLQQHLSTQNFREADEETRRLLIVLAGEQAQKRGYVFFSEAQFISEADLKAIDDLWRQHSNNKFGYSVQRKIYGKVSNDFTK 136
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: I1LJQ0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.216e-34 Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251 D L+HHLS +NF ADEETRRLLIVLAGEAAQKR YVFFSEV+FISE L+AID LW++YS KFGYSVQK+L +KAN DFTK Sbjct: 82 DLLRHHLSNKNFELADEETRRLLIVLAGEAAQKRGYVFFSEVKFISEGGLRAIDSLWREYSGGKFGYSVQKKLLEKANGDFTK 164
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: K7LT63_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 4.865e-34 Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251 D L+HHLST NF ADEETRRLLIVLAGEAAQKR YVFFSEV+FISE+ L+AID LW+++S KFGYSVQK+L +KAN DFTK Sbjct: 141 DLLRHHLSTNNFQLADEETRRLLIVLAGEAAQKRGYVFFSEVKFISESALRAIDSLWREHSGGKFGYSVQKKLLEKANGDFTK 223
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: A0A072ULR7_MEDTR (Tetrapyrrole-binding protein OS=Medicago truncatula GN=MTR_4g067150 PE=4 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.306e-34 Identity = 63/81 (77.78%), Postives = 72/81 (88.89%), Query Frame = -2 Query: 3 LKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 245 L+ HLS +NF +ADEETRRLLIVLAGEAAQKR YVFFSEVQFISE DLK ID+LW+ +S+NKFGYSVQK+L+ KA KDFTK Sbjct: 82 LQQHLSAKNFREADEETRRLLIVLAGEAAQKRGYVFFSEVQFISEEDLKTIDQLWRDHSDNKFGYSVQKKLFGKAKKDFTK 162
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: A0A0B2QZ96_GLYSO (Tetrapyrrole-binding protein, chloroplastic OS=Glycine soja GN=glysoja_010206 PE=4 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 8.007e-34 Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251 D L+HHLS +NF ADEETRRLLIVLAGEAAQKR YVFFSEV+FISE+ L+AID LW+++S KFGYSVQK+L +KAN DFTK Sbjct: 82 DLLRHHLSNKNFELADEETRRLLIVLAGEAAQKRGYVFFSEVKFISESALRAIDSLWREHSGGKFGYSVQKKLLEKANGDFTK 164
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: K4C948_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc06g073290.1 PE=4 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 8.343e-34 Identity = 63/83 (75.90%), Postives = 73/83 (87.95%), Query Frame = -2 Query: 6 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLW-QKANKDFT 251 DTL+ HL +QNF +ADEETRRLLIVLAGEAA KR YVFFSEVQFISE+DLK ID LW++YS+ KFGYSVQK++W KAN+DFT Sbjct: 73 DTLEQHLISQNFREADEETRRLLIVLAGEAAVKRGYVFFSEVQFISESDLKEIDSLWRKYSDGKFGYSVQKKIWNNKANRDFT 155
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: A0A068UNL3_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_42 OS=Coffea canephora GN=GSCOC_T00030601001 PE=4 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 1.031e-33 Identity = 60/83 (72.29%), Postives = 73/83 (87.95%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251 D L+ HLS ++F QADEETRRLLI+LAGEAAQKR YVFFSEVQFISE DL+ IDELW++ SN+K+GYSVQK++W K ++DFTK Sbjct: 81 DLLQQHLSLKDFRQADEETRRLLIILAGEAAQKRGYVFFSEVQFISEDDLRTIDELWRKSSNDKYGYSVQKKIWNKVSRDFTK 163
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: V7AIL6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G054500g PE=4 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 1.048e-33 Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251 D L+HHLS++NF QADEETRRLLIVLAGEAAQKR YVFFSEVQFIS +DL ID LW+++S NKFGYSVQKR+ +K + DFTK Sbjct: 130 DLLRHHLSSKNFQQADEETRRLLIVLAGEAAQKRGYVFFSEVQFISGSDLITIDTLWREHSGNKFGYSVQKRILEKVDGDFTK 212
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Match: M1CKI7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027013 PE=4 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 3.279e-33 Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = -2 Query: 6 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQ-KANKDFT 251 DTL+ HL +QNF +ADEETRRLLIVLAGEAA KR YVFFSEVQFISE+DLK ID LW++YS+ KFGYSVQK++W K N+DFT Sbjct: 72 DTLEQHLISQNFREADEETRRLLIVLAGEAAVKRGYVFFSEVQFISESDLKEIDSLWRKYSDGKFGYSVQKKIWNTKVNRDFT 154
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: GUN4C_ARATH (Tetrapyrrole-binding protein, chloroplastic OS=Arabidopsis thaliana GN=GUN4 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 2.353e-29 Identity = 53/83 (63.86%), Postives = 67/83 (80.72%), Query Frame = -2 Query: 3 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 251 D L++HL QNF QADEETRRLLI ++GEAA KR YVFFSEV+ IS DL+AID LW ++S+ +FGYSVQ+++W K KDFT+ Sbjct: 82 DVLENHLVNQNFRQADEETRRLLIQISGEAAVKRGYVFFSEVKTISPEDLQAIDNLWIKHSDGRFGYSVQRKIWLKVKKDFTR 164
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YC53L_SYNY3 (Ycf53-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0558 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.511e-16 Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = -2 Query: 3 LKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 245 L+ L +Q+F ADE TR L LAG A +R++++F+EV+ DL I+ LW +SN FG+SVQ+RLW + K+FTK Sbjct: 96 LQEALGSQDFETADEITRDKLCELAGPGASQRQWLYFTEVEKFPALDLHTINALWWLHSNGNFGFSVQRRLWLASGKEFTK 176
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YCF53_CYACA (Uncharacterized protein ycf53 OS=Cyanidium caldarium GN=ycf53 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.110e-13 Identity = 29/74 (39.19%), Postives = 54/74 (72.97%), Query Frame = -2 Query: 30 DTLKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLW 251 +TL+ LS NFF+A++ T+++L+ LAGE +++R +++F++V I+ + ++ LW+ YS FG+S+QKR+W Sbjct: 103 ETLESLLSANNFFEANKFTQQILLELAGEQSKQRNWMYFTDVHSINHQSVSDLNHLWELYSQGNFGFSIQKRIW 176
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YCF53_PYRYE (Uncharacterized protein ycf53 OS=Pyropia yezoensis GN=ycf53 PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 4.658e-12 Identity = 31/81 (38.27%), Postives = 53/81 (65.43%), Query Frame = -2 Query: 3 LKHHLSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDFTK 245 L+ L+ ++ +AD+ T++ LI LAG AQ R +++F++++ I DL+ ID+LW +S KFG VQ+++W KD+ K Sbjct: 102 LQMLLTHRDLLKADQLTQQKLIQLAGVNAQTRNWLYFTDIKKIPAQDLQTIDKLWHTHSKGKFGLFVQRQIWLSVGKDWGK 182
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Match: YCF53_PORPU (Uncharacterized protein ycf53 OS=Porphyra purpurea GN=ycf53 PE=3 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 1.110e-9 Identity = 27/75 (36.00%), Postives = 47/75 (62.67%), Query Frame = -2 Query: 9 LSTQNFFQADEETRRLLIVLAGEAAQKRRYVFFSEVQFISEADLKAIDELWKQYSNNKFGYSVQKRLWQKANKDF 233 L N AD+ T++ LI LAG + R +++F++++ I DL+ ID+LW +S KFG+ VQ+++W K++ Sbjct: 107 LVQNNLIAADKLTQQKLIKLAGVDEKSRNWLYFTDIKKIPVEDLQTIDQLWNAHSKGKFGFFVQRQIWLALEKNW 181 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0013393 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 5
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0013393 ID=g.arboreum_cottongen_reftransV1_0013393; Name=g.arboreum_cottongen_reftransV1_0013393; organism=Gossypium arboreum; type=contig; length=531bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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