g.arboreum_cottongen_reftransV1_0014722, g.arboreum_cottongen_reftransV1_0014722 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A0B0MGD5_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_22992 PE=4 SV=1) HSP 1 Score: 227.254 bits (578), Expect = 6.884e-71 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR Sbjct: 151 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 258
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A0B0MLG1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_22992 PE=4 SV=1) HSP 1 Score: 227.254 bits (578), Expect = 8.046e-71 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR Sbjct: 159 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 266
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A0D2REM0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G007500 PE=4 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 6.302e-69 Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQEVLSTMTPRPTDHWPF SKGEGKGIMLKSPHTPKAPR GPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR Sbjct: 159 RSRQEVLSTMTPRPTDHWPFMSKGEGKGIMLKSPHTPKAPRQGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 266
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A061DGH5_THECC (F-box family protein OS=Theobroma cacao GN=TCM_000159 PE=4 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 6.200e-64 Identity = 96/108 (88.89%), Postives = 104/108 (96.30%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQE+LSTMTPRPT+HWPF SKG+GK I+++SPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDS FPSRCM+PS +PKPLCKSLASNRVLFYEDELCQAVAQNKLR Sbjct: 160 RSRQEMLSTMTPRPTEHWPFMSKGDGKSILMRSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSGFPSRCMIPSVIPKPLCKSLASNRVLFYEDELCQAVAQNKLR 267
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A067FV90_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024421mg PE=4 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 4.710e-61 Identity = 92/108 (85.19%), Postives = 102/108 (94.44%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQE+L MTPRPT+ WPF SKGEG+G+++ SPHTPKAP+HGPRPPSR+K+TE+RQIAAVLFQDSAFPSRCMVPS LPKPLCKSLASNRVLFYEDELCQAVAQNKLR Sbjct: 161 RSRQEMLQIMTPRPTERWPFVSKGEGRGVLMPSPHTPKAPKHGPRPPSRMKITEMRQIAAVLFQDSAFPSRCMVPSVLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 268
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: D7TGH3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s2668g00010 PE=4 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 6.726e-61 Identity = 93/107 (86.92%), Postives = 100/107 (93.46%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKL 322 RSRQE+L TMTP PT+HWPF SKG+GKG+ L SPHTPKAPRHGPRPPSR+KVTE+RQIAAVLFQ+SA PSRCMVPS LPKPLCKSLASNRVLFYEDELCQAVAQNKL Sbjct: 67 RSRQEMLRTMTPLPTEHWPFVSKGDGKGVFLASPHTPKAPRHGPRPPSRLKVTEMRQIAAVLFQESALPSRCMVPSILPKPLCKSLASNRVLFYEDELCQAVAQNKL 173
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: V4SDN2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026280mg PE=4 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 1.341e-60 Identity = 91/108 (84.26%), Postives = 102/108 (94.44%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQE+L +MTPRPT+ WPF SKGEG+G+++ SPHTPKAP+HGPRPPSR+K+TE+RQIAAVLFQDS FPSRCMVPS LPKPLCKSLASNRVLFYEDELCQAVAQNKLR Sbjct: 161 RSRQEMLQSMTPRPTERWPFVSKGEGRGVLMPSPHTPKAPKHGPRPPSRMKITEMRQIAAVLFQDSTFPSRCMVPSVLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 268
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A0D2PBW8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G192100 PE=4 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 2.093e-60 Identity = 94/108 (87.04%), Postives = 100/108 (92.59%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQE+LSTMTPR T+HWPF SKG+GK ++ SPHTPKAPR GPRPPSR+KVTELRQIAAVLFQDS FPSRCMVPS LPKPLCKSLASNRVLFYEDELCQAVAQNKLR Sbjct: 160 RSRQEMLSTMTPRVTEHWPFLSKGDGKSNLMGSPHTPKAPRQGPRPPSRIKVTELRQIAAVLFQDSGFPSRCMVPSVLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 267
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: M5WA31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010075mg PE=4 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 2.452e-60 Identity = 90/107 (84.11%), Postives = 102/107 (95.33%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKL 322 RSRQE+L+TMTP PT+HWPF SKG+GKGI ++SPHTPKAPRHGPRPPSR+KV+E+RQ+AAVLFQ+S FP+RCMVPS LPKPLCKSLASNRVLFYEDELCQAVAQNKL Sbjct: 158 RSRQEMLNTMTPHPTEHWPFLSKGDGKGIFIRSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQESNFPTRCMVPSVLPKPLCKSLASNRVLFYEDELCQAVAQNKL 264
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A067JJ36_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25374 PE=4 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 4.219e-60 Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQE+L TMTPRPT+HWPF SKGEGK L SPHTPKAPRHGPRPPSR+KVTE++QIAAVLFQDSAFP RCMVPS L KPLCKSLASNRVLFYEDELCQAVAQNKLR Sbjct: 160 RSRQEMLRTMTPRPTEHWPFVSKGEGKAAFLPSPHTPKAPRHGPRPPSRIKVTEMKQIAAVLFQDSAFPPRCMVPSALSKPLCKSLASNRVLFYEDELCQAVAQNKLR 267
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy Swiss-Prot
Match: FB248_ARATH (F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 2.905e-37 Identity = 71/111 (63.96%), Postives = 83/111 (74.77%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSA-FPSRCMVPSTLPKP-LCKSLASN--RVLFYEDELCQAVAQNKL 322 RSRQE+L MTP P + WPF +G+G M+ SPHTPKAP+H PRPPSR K+ E++QI AVLFQD FPSRC+VPS L +P L K +A RVLFYEDELCQAVAQN L Sbjct: 211 RSRQEMLRVMTPVPINRWPF-RRGDGNPTMVSSPHTPKAPKHAPRPPSRTKLAEMKQITAVLFQDQTPFPSRCIVPSVLQRPTLFKPMAPKHPRVLFYEDELCQAVAQNNL 320 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0014722 ID=g.arboreum_cottongen_reftransV1_0014722; Name=g.arboreum_cottongen_reftransV1_0014722; organism=Gossypium arboreum; type=contig; length=568bpback to top |