g.arboreum_cottongen_reftransV1_0014722, g.arboreum_cottongen_reftransV1_0014722 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0014722
Unique Nameg.arboreum_cottongen_reftransV1_0014722
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length568
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0014722:1..568 .
Chr1:135034309..135035168 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A0A0L111_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002650 PE=4 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.990e-56
Identity = 88/108 (81.48%), Postives = 98/108 (90.74%), Query Frame = 2
Query:    2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325
            RSRQE+L   TPRPT+HWPF +KG+GKG  L SPHTPKAPRHGPRPPSR+KV+E+RQ+AAVLFQ+SAFP RCMVPS + KPLCKSLASNRVLFYEDELCQAVAQNKLR
Sbjct:  159 RSRQEMLRITTPRPTEHWPFVNKGDGKGFSLPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQESAFPPRCMVPSVISKPLCKSLASNRVLFYEDELCQAVAQNKLR 266          
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: I1MN22_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 5.484e-56
Identity = 86/108 (79.63%), Postives = 99/108 (91.67%), Query Frame = 2
Query:    2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325
            RSRQE+LSTMTPRPT+HWPF  KG+GKG+ + SPHTPKAPRHGPRPPSR+K++E+RQ+ AVLF +SAFPS C+VPS + KPLCKSLASNRVLFYEDELCQAVAQNKLR
Sbjct:  177 RSRQEMLSTMTPRPTEHWPFLCKGDGKGVRIPSPHTPKAPRHGPRPPSRLKISEMRQVTAVLFPESAFPSHCLVPSVISKPLCKSLASNRVLFYEDELCQAVAQNKLR 284          
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A059AIG9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02473 PE=4 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.020e-55
Identity = 87/108 (80.56%), Postives = 98/108 (90.74%), Query Frame = 2
Query:    2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325
            RSRQE+L TMTPRPT+HWPF  +G+GKG+ + SPHTPKAPRHGPRPPSR+K+ E+RQIAAVLFQ+S FPSRCMVPS L KPLCKSLASNR LFYE+ELCQAVAQNKLR
Sbjct:  159 RSRQEMLRTMTPRPTEHWPF-KRGDGKGVFMPSPHTPKAPRHGPRPPSRIKLAEMRQIAAVLFQESTFPSRCMVPSVLTKPLCKSLASNRALFYEEELCQAVAQNKLR 265          
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A0B2NTI9_GLYSO (F-box protein OS=Glycine soja GN=glysoja_000124 PE=4 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.121e-52
Identity = 82/108 (75.93%), Postives = 95/108 (87.96%), Query Frame = 2
Query:    2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325
            RSRQE+LST TP PT+HWPF  KG+GKGI + SPHTPKAPRHG RP SR+K++E++Q+ AVLF +S FPS C+VPS +PKPLCKSLASNRVLFYEDELCQAVAQNKLR
Sbjct:   14 RSRQEMLSTTTPCPTEHWPFLCKGDGKGIRIPSPHTPKAPRHGLRPSSRLKISEMQQVTAVLFPESTFPSHCLVPSVIPKPLCKSLASNRVLFYEDELCQAVAQNKLR 121          
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: K7K6G6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 7.607e-51
Identity = 82/108 (75.93%), Postives = 95/108 (87.96%), Query Frame = 2
Query:    2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325
            RSRQE+LST TP PT+HWPF  KG+GKGI + SPHTPKAPRHG RP SR+K++E++Q+ AVLF +S FPS C+VPS +PKPLCKSLASNRVLFYEDELCQAVAQNKLR
Sbjct:  179 RSRQEMLSTTTPCPTEHWPFLCKGDGKGIRIPSPHTPKAPRHGLRPSSRLKISEMQQVTAVLFPESTFPSHCLVPSVIPKPLCKSLASNRVLFYEDELCQAVAQNKLR 286          
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy Swiss-Prot
Match: FB248_ARATH (F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.905e-37
Identity = 71/111 (63.96%), Postives = 83/111 (74.77%), Query Frame = 2
Query:    2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSA-FPSRCMVPSTLPKP-LCKSLASN--RVLFYEDELCQAVAQNKL 322
            RSRQE+L  MTP P + WPF  +G+G   M+ SPHTPKAP+H PRPPSR K+ E++QI AVLFQD   FPSRC+VPS L +P L K +A    RVLFYEDELCQAVAQN L
Sbjct:  211 RSRQEMLRVMTPVPINRWPF-RRGDGNPTMVSSPHTPKAPKHAPRPPSRTKLAEMKQITAVLFQDQTPFPSRCIVPSVLQRPTLFKPMAPKHPRVLFYEDELCQAVAQNNL 320          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A0L111_CUCSA1.990e-5681.48Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
I1MN22_SOYBN5.484e-5679.63Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A059AIG9_EUCGR2.020e-5580.56Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A0B2NTI9_GLYSO1.121e-5275.93F-box protein OS=Glycine soja GN=glysoja_000124 PE... [more]
K7K6G6_SOYBN7.607e-5175.93Uncharacterized protein OS=Glycine max PE=4 SV=1[more]

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BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB248_ARATH2.905e-3763.96F-box protein At4g35930 OS=Arabidopsis thaliana GN... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34049:SF2SUBFAMILY NOT NAMEDcoord: 1..99
NoneNo IPR availablePANTHERPTHR34049FAMILY NOT NAMEDcoord: 1..99

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0014722 ID=g.arboreum_cottongen_reftransV1_0014722; Name=g.arboreum_cottongen_reftransV1_0014722; organism=Gossypium arboreum; type=contig; length=568bp
TCGTTCAAGGCAAGAGGTGCTTAGCACAATGACACCAAGGCCTACCGATC
ACTGGCCCTTTACGAGCAAGGGAGAAGGCAAAGGTATTATGTTAAAAAGC
CCACACACTCCAAAAGCTCCACGACACGGTCCACGGCCACCTTCTCGTGT
TAAAGTGACCGAGTTGAGGCAAATCGCTGCAGTGCTCTTTCAAGATTCTG
CATTCCCTTCGAGATGCATGGTACCCTCTACTCTCCCTAAACCATTATGC
AAATCTTTGGCTTCGAATCGAGTTTTATTTTACGAAGATGAGTTATGCCA
AGCTGTTGCTCAAAATAAGCTTCGTTGATATATTCCCCAGTGTTAGAAAA
TATCATAAAGCTGGATTCCACTTGTATATAGTTATATTTTTTTGCCCATT
TCTATACAGGAGATTATAGTTAATAGAGTCAGAAGTATCAGATATGAGGT
TTTGTAGGCTTTGCTTGGGGAGTATTAGGTTATATATATGAAACTTTATA
TGAATCTTATATGCATTAAGGGTTTGAAGATTTTAGAGGATAAATGTGGT
TTTTTTTCACAATAATAG
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