g.arboreum_cottongen_reftransV1_0014722, g.arboreum_cottongen_reftransV1_0014722 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A0B0PT17_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_15342 PE=4 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 3.767e-59 Identity = 93/108 (86.11%), Postives = 99/108 (91.67%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQE+LSTMTPR T+HWPF SK +GK ++ SPHTPKAPR GPRPPSR+KVTELRQIAAVLFQDS FPSRCMVPS LPKPLCKSLASNRVLFYEDELCQAVAQNKLR Sbjct: 88 RSRQEMLSTMTPRVTEHWPFLSKRDGKSNLIGSPHTPKAPRQGPRPPSRIKVTELRQIAAVLFQDSGFPSRCMVPSVLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 195
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: B9SYT6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0362700 PE=4 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 4.482e-59 Identity = 92/108 (85.19%), Postives = 98/108 (90.74%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQE+L MTPRPT+HWPF SKG+GKG + SPHTPKAPRHGPRPPSRVKVTE++QIAAVLFQDSAFPSR MVPS L KPLCKSLASNR LFYEDELCQAVAQNKLR Sbjct: 162 RSRQEILRVMTPRPTEHWPFVSKGDGKGAFMPSPHTPKAPRHGPRPPSRVKVTEMKQIAAVLFQDSAFPSRYMVPSALSKPLCKSLASNRALFYEDELCQAVAQNKLR 269
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A0B0PUN9_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_15342 PE=4 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 5.726e-59 Identity = 93/108 (86.11%), Postives = 99/108 (91.67%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQE+LSTMTPR T+HWPF SK +GK ++ SPHTPKAPR GPRPPSR+KVTELRQIAAVLFQDS FPSRCMVPS LPKPLCKSLASNRVLFYEDELCQAVAQNKLR Sbjct: 160 RSRQEMLSTMTPRVTEHWPFLSKRDGKSNLIGSPHTPKAPRQGPRPPSRIKVTELRQIAAVLFQDSGFPSRCMVPSVLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 267
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A5AZ75_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036263 PE=4 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 2.195e-58 Identity = 93/107 (86.92%), Postives = 100/107 (93.46%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKL 322 RSRQE+L TMTP PT+HWPF SKG+GKG+ L SPHTPKAPRHGPRPPSR+KVTE+RQIAAVLFQ+SA PSRCMVPS LPKPLCKSLASNRVLFYEDELCQAVAQNKL Sbjct: 356 RSRQEMLRTMTPLPTEHWPFVSKGDGKGVFLASPHTPKAPRHGPRPPSRLKVTEMRQIAAVLFQESALPSRCMVPSILPKPLCKSLASNRVLFYEDELCQAVAQNKL 462
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A068VHN2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_918 OS=Coffea canephora GN=GSCOC_T00011340001 PE=4 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 3.929e-58 Identity = 88/108 (81.48%), Postives = 99/108 (91.67%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 R+RQE+L TMTP PTDHWPF SKG+GKGI + SPHTPKAPRHGPRPPSR+K TE+RQIAAVLFQ+SAFPSRC+VPS L +P+CKSLASNR LFYE+ELCQAVAQNKLR Sbjct: 6 RTRQEMLRTMTPLPTDHWPFMSKGDGKGIWIPSPHTPKAPRHGPRPPSRLKFTEMRQIAAVLFQESAFPSRCLVPSALSQPICKSLASNRALFYEEELCQAVAQNKLR 113
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: B9MXD0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s11220g PE=4 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 4.000e-58 Identity = 89/108 (82.41%), Postives = 99/108 (91.67%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQE+L TMTPRPT+HWPF SKG GKGI + +PHTPKAPRHGPRPPSR+K+TE++ IAAVLFQDS SRCMVPSTLPKPLCKS+ASNRVLFYE+ELCQAVAQNKLR Sbjct: 181 RSRQEMLLTMTPRPTEHWPFMSKGSGKGIFMSTPHTPKAPRHGPRPPSRIKITEMKSIAAVLFQDSTLSSRCMVPSTLPKPLCKSVASNRVLFYEEELCQAVAQNKLR 288
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: V7CH17_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G265700g PE=4 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 1.922e-57 Identity = 89/108 (82.41%), Postives = 102/108 (94.44%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQE+LSTMTPRPT+HWPF SKG+GKG+ + SPHTPKAPRHGPRPPSR+K++E+RQ+AAVLF +SAFPSRC+VPS +PKPL KSLASNRVLFYEDELCQAVAQNKLR Sbjct: 167 RSRQEMLSTMTPRPTEHWPFLSKGDGKGVRVPSPHTPKAPRHGPRPPSRLKISEMRQVAAVLFPESAFPSRCLVPSVIPKPLYKSLASNRVLFYEDELCQAVAQNKLR 274
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: W9SMW8_9ROSA (F-box protein OS=Morus notabilis GN=L484_026641 PE=4 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.978e-57 Identity = 89/108 (82.41%), Postives = 99/108 (91.67%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQE+L TMTPRPT+HWPF SKG+GKGI L SPHTPKAPR GPRPPSR+K +E+RQ+AAVLFQ+SA P+RCMVPS L KPLCKSLASNRVLFYE+ELCQAVAQNKLR Sbjct: 155 RSRQEMLRTMTPRPTEHWPFASKGDGKGIWLPSPHTPKAPRQGPRPPSRLKASEVRQVAAVLFQESALPARCMVPSVLAKPLCKSLASNRVLFYEEELCQAVAQNKLR 262
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A0B2RUP8_GLYSO (F-box protein OS=Glycine soja GN=glysoja_033026 PE=4 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 7.749e-57 Identity = 86/108 (79.63%), Postives = 99/108 (91.67%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 RSRQE+LSTMTPRPT+HWPF KG+GKG+ + SPHTPKAPRHGPRPPSR+K++E+RQ+ AVLF +SAFPS C+VPS + KPLCKSLASNRVLFYEDELCQAVAQNKLR Sbjct: 81 RSRQEMLSTMTPRPTEHWPFLCKGDGKGVRIPSPHTPKAPRHGPRPPSRLKISEMRQVTAVLFPESAFPSHCLVPSVISKPLCKSLASNRVLFYEDELCQAVAQNKLR 188
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A068U0L4_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_7 OS=Coffea canephora GN=GSCOC_T00037037001 PE=4 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 1.058e-56 Identity = 88/108 (81.48%), Postives = 99/108 (91.67%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325 R+RQE+L TMTP PTDHWPF SKG+GKGI + SPHTPKAPRHGPRPPSR+K TE+RQIAAVLFQ+SAFPSRC+VPS L +P+CKSLASNR LFYE+ELCQAVAQNKLR Sbjct: 188 RTRQEMLRTMTPLPTDHWPFMSKGDGKGIWIPSPHTPKAPRHGPRPPSRLKFTEMRQIAAVLFQESAFPSRCLVPSALSQPICKSLASNRALFYEEELCQAVAQNKLR 295
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy Swiss-Prot
Match: FB248_ARATH (F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 2.905e-37 Identity = 71/111 (63.96%), Postives = 83/111 (74.77%), Query Frame = 2 Query: 2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSA-FPSRCMVPSTLPKP-LCKSLASN--RVLFYEDELCQAVAQNKL 322 RSRQE+L MTP P + WPF +G+G M+ SPHTPKAP+H PRPPSR K+ E++QI AVLFQD FPSRC+VPS L +P L K +A RVLFYEDELCQAVAQN L Sbjct: 211 RSRQEMLRVMTPVPINRWPF-RRGDGNPTMVSSPHTPKAPKHAPRPPSRTKLAEMKQITAVLFQDQTPFPSRCIVPSVLQRPTLFKPMAPKHPRVLFYEDELCQAVAQNNL 320 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0014722 ID=g.arboreum_cottongen_reftransV1_0014722; Name=g.arboreum_cottongen_reftransV1_0014722; organism=Gossypium arboreum; type=contig; length=568bpback to top |