g.arboreum_cottongen_reftransV1_0011163, g.arboreum_cottongen_reftransV1_0011163 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: A0A0B0MU63_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_26668 PE=4 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.760e-24 Identity = 59/155 (38.06%), Postives = 79/155 (50.97%), Query Frame = -3 Query: 452 WRGEASREYFVRSGYKILLQRNENYRQKEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIMLHSTREVSQTFICALWAIWSAKNKWMYENHRR 916 WRGE++ EY VRSGYK L +N Q YK+LW+ +LPSKI IT WR + N++ NL KRL+ A C+RC G ETREH+FRDC K++ CALWAIW+ +N++++E R Sbjct: 38 WRGESTGEYSVRSGYKYL-HEGQNQLQINYKQFYKRLWNLELPSKIKITIWRCSRNYLPNYSNLHYKRLMGLATCRRCHTGAETREHLFRDCPVAKEM----------------------------------MITCALWAIWANRNRFLHEGESR 157
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: F4NCI7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 2.920e-16 Identity = 46/181 (25.41%), Postives = 80/181 (44.20%), Query Frame = -3 Query: 461 FSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGY---KILLQRNENYRQKEINT-CYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQV-EFMEWFTWIMLHSTREVSQTFICALWAIWSAKNKWMYEN 988 F EE + +L IPL++ + W + + VRS Y ++ R + E T ++++W P K++ WR + L ++ + +A C C E+ H DCT + IW+ F + + F E W+ H+T+E +T +WA W +NK ++EN Sbjct: 984 FVEEEWELVLSIPLSRFLPDDHRYWWPSRNGIFSVRSCYWLGRLGPVRTWQLQHGERETELWRRVWQLQGPPKLSHFLWRACKGSLAVKGRLFSRHISVDATCSVCGDPDESINHALFDCTFARAIWQVSGFASLMMNAPLSSFSERLEWLAKHATKEEFRTMCSFMWAGWFCRNKLIFEN 1164 HSP 2 Score: 45.0542 bits (105), Expect = 2.920e-16 Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = -2 Query: 1008 FLSSEL-----GSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWV 1145 F SSEL G PS+TW+ IW SK LL+ L+W VG+ + I++ ED W+ Sbjct: 893 FKSSELLEARRGYNPSFTWRSIWGSKSLLLEGLKWCVGSGERIRVWEDAWI 943 HSP 3 Score: 28.4906 bits (62), Expect = 2.920e-16 Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = -2 Query: 384 LWRPPKKDFFKINFDA 431 LW PP FK+NFDA Sbjct: 1203 LWSPPPTGMFKVNFDA 1218
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: Q7X970_ORYSJ (BZIP-like protein OS=Oryza sativa subsp. japonica PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-15 Identity = 46/183 (25.14%), Postives = 83/183 (45.36%), Query Frame = -3 Query: 449 AQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQ-----RNENYRQKEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIM--LHSTREVSQT-FICALWAIWSAKNKWMYENHRRP 973 A+ IL I ++ + E F++W + + + VRS Y++ Q + + IN ++ +W C +P K+ I AWRV N + T+VN K ++L +CQ C + E H C ++W + + ++ + W+ L E Q F+ LW W +N+ ++ P Sbjct: 1718 AEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPP 1900 HSP 2 Score: 33.8834 bits (76), Expect = 5.423e-15 Identity = 19/52 (36.54%), Postives = 26/52 (50.00%), Query Frame = -2 Query: 990 FLSSELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESR 1145 + + GS S W+ I LL + W+VGN SI+I D W+P SR Sbjct: 1629 LIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSR 1680
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: Q2QXH7_ORYSJ (Os12g0156200 protein OS=Oryza sativa subsp. japonica GN=LOC_Os12g06010 PE=4 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 6.639e-15 Identity = 46/183 (25.14%), Postives = 83/183 (45.36%), Query Frame = -3 Query: 449 AQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQ-----RNENYRQKEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIM--LHSTREVSQT-FICALWAIWSAKNKWMYENHRRP 973 A+ IL I ++ + E F++W + + + VRS Y++ Q + + IN ++ +W C +P K+ I AWRV N + T+VN K ++L +CQ C + E H C ++W + + ++ + W+ L E Q F+ LW W +N+ ++ P Sbjct: 1115 AEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPP 1297 HSP 2 Score: 33.8834 bits (76), Expect = 6.639e-15 Identity = 19/52 (36.54%), Postives = 26/52 (50.00%), Query Frame = -2 Query: 990 FLSSELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESR 1145 + + GS S W+ I LL + W+VGN SI+I D W+P SR Sbjct: 1026 LIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSR 1077
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: Q7XCU0_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os10g37170 PE=4 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 6.904e-15 Identity = 53/192 (27.60%), Postives = 80/192 (41.67%), Query Frame = -3 Query: 461 FSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQRNENYRQKEINTC-------------YKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIMLHSTREVSQT---FICALWAIWSAKNKWMYEN 988 F ++A++IL IP+++H F SW + Y VRS Y L R+E + + N+ +K LW + P K+ IT WR + T L+ + + + C C + +T EHVF C +IWE ++ L + F WI R S W IW A+N N Sbjct: 952 FPVDIAKEILQIPISRHGDADFASWPHDKLGLYSVRSAYN--LARSEAFFADQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCNRD-DTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAVTFWHIWEARNNTKNNN 1140 HSP 2 Score: 38.5058 bits (88), Expect = 6.904e-15 Identity = 16/45 (35.56%), Postives = 28/45 (62.22%), Query Frame = -2 Query: 984 PSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESRLL 1118 PS+TW+ + + LL ++W VG+ ++IKI D W+P +L+ Sbjct: 876 PSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLV 920 HSP 3 Score: 20.4014 bits (41), Expect = 6.904e-15 Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = -2 Query: 381 WRPPKKDFFKINFDAA 428 W+PP + IN DAA Sbjct: 1181 WQPPPASVWMINSDAA 1196
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: Q9FW98_ORYSJ (Putative non-LTR retroelement reverse transcriptase OS=Oryza sativa subsp. japonica GN=OSJNBa0026L12.31 PE=4 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.295e-14 Identity = 52/186 (27.96%), Postives = 79/186 (42.47%), Query Frame = -3 Query: 479 FSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQRNENYRQKEINTC-------------YKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIMLHSTREVSQT---FICALWAIWSAKN 988 F ++A++IL IP+++H F SW + Y VRS Y L R+E + + N+ +K LW + P K+ IT WR + T L+ + + + C C + +T EHVF C +IWE ++ L + F WI R S W IW A+N Sbjct: 995 FPVDIAKEILQIPISRHGDADFASWPHDKLGLYSVRSAYN--LARSEAFFADQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCNRD-DTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAVTFWHIWEARN 1177 HSP 2 Score: 38.5058 bits (88), Expect = 1.295e-14 Identity = 16/45 (35.56%), Postives = 28/45 (62.22%), Query Frame = -2 Query: 984 PSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESRLL 1118 PS+TW+ + + LL ++W VG+ ++IKI D W+P +L+ Sbjct: 919 PSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLV 963
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: Q94HY0_ORYSJ (Putative reverse transcriptase OS=Oryza sativa subsp. japonica GN=OSJNBa0076F20.17 PE=4 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.125e-14 Identity = 46/183 (25.14%), Postives = 83/183 (45.36%), Query Frame = -3 Query: 449 AQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQ-----RNENYRQKEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIM--LHSTREVSQT-FICALWAIWSAKNKWMYENHRRP 973 A+ IL I ++ + E F++W + + + VRS Y++ Q + + IN ++ +W C +P K+ I AWRV N + T+VN K ++L +CQ C + E H C ++W + + ++ + W+ L E Q F+ LW W +N+ ++ P Sbjct: 394 AEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPP 576 HSP 2 Score: 33.8834 bits (76), Expect = 4.125e-14 Identity = 19/52 (36.54%), Postives = 26/52 (50.00%), Query Frame = -2 Query: 990 FLSSELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESR 1145 + + GS S W+ I LL + W+VGN SI+I D W+P SR Sbjct: 305 LIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDPWLPRDHSR 356
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: B9FQ15_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_22054 PE=4 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 5.472e-14 Identity = 54/208 (25.96%), Postives = 96/208 (46.15%), Query Frame = -3 Query: 407 FSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKI------LLQRNENYRQ-----KEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLE--FTRPQTLSQVEFMEWFTWIMLHSTREVSQTFICA-LWAIWSAKNKWMYENHRRP*GWNPSYGGPRKKI 988 F E AQ+IL IP++ H E F+SW + + VRS Y + + ++EN R +E +K+LW + P K+ WR+ + + + L+ + + C C + + EH+F C IW++++ F ++ + M+ + + L + + +T + LW IW A+ NH R NP+ PR+ I Sbjct: 553 FDETTAQQILQIPVSAHGGEDFISWPHDKRGVFSVRSAYNLARSEIFMAAQSENGRGMLSGLQESANRWKELWRINAPGKMLTNLWRIVHDCLPSGFQLRRRHIPATDGCCFCERD-DRIEHIFLLCPFAVCIWDSIKQHFDLKLCMTDLSNMKQWVFDFLGRSSNIQKTALAVTLWHIWEAR------NHSRN---NPTLANPRQVI 750 HSP 2 Score: 38.891 bits (89), Expect = 5.472e-14 Identity = 15/44 (34.09%), Postives = 28/44 (63.64%), Query Frame = -2 Query: 984 SYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESRLL 1115 S+TW+ I + LL ++W +GN S+KI +D W+P ++ ++ Sbjct: 478 SFTWRSILFGRDLLRKGVRWGIGNGSSVKILKDHWIPGIKPSMV 521
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: S8CW68_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_05560 PE=4 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 6.190e-14 Identity = 47/180 (26.11%), Postives = 77/180 (42.78%), Query Frame = -3 Query: 491 RVGFSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQRNENYRQKEINTCYKK------LWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIM-----LHSTREVSQTFICALWAIW 997 R FS IL IPLA++ + L W EY V++GY++L +E + K LW LP +I WR + + +L +R+ + C C + ET H F C+ ++ +W F+ ++ +E + WI+ LH+ E + LW+IW Sbjct: 94 RQTFSSSDVHCILAIPLAKNPYPDRLIWHFTRQGEYSVKTGYQLLKSTSEMNSPGSSRSNANKILMWQALWKLKLPMRILTFNWRFGKHILPLKDSLVRRRIGTDPTCSACEEDRETWFHAFISCSFSQAVWRLGGFS--MDMAGLESLHPGDWILSRFHQLHT--EQFAGLLVTLWSIW 269 HSP 2 Score: 45.4394 bits (106), Expect = 6.190e-14 Identity = 18/49 (36.73%), Postives = 31/49 (63.27%), Query Frame = -2 Query: 999 FLSSELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNV 1145 FL + LG PSY W+ I + + +L L+W++G+ SI + +D W+P+ Sbjct: 11 FLQAPLGRSPSYAWRSIHSCRDVLTGGLRWRIGDGSSIDVWKDPWIPDT 59
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: A5B0T8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024672 PE=4 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 6.440e-14 Identity = 39/131 (29.77%), Postives = 58/131 (44.27%), Query Frame = -3 Query: 617 RVGFSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKIL--LQRNENYRQKEINTCY--KKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWE 997 R F A IL IPL + E +SW +A EY RSGY L +++ ++++ + +LW P KI AWR N + T L + + C C ET H +C AT+ +W+ Sbjct: 1174 RDKFMARDADLILYIPLPMSSREDQISWSFDARGEYTARSGYGALRCFRQSAALVASDVDSNFVWAQLWKVTTPPKILNFAWRAARNCLPTRFALTIRHVDTPMCCPICRSEPETTLHALVECVATRDVWD 1304 HSP 2 Score: 43.8986 bits (102), Expect = 6.440e-14 Identity = 20/54 (37.04%), Postives = 34/54 (62.96%), Query Frame = -2 Query: 984 FLSSELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESRLL 1145 FL++ELGS PSY W+ I A++ LL W + + +++ D W+P+ +RL+ Sbjct: 1093 FLNAELGSNPSYMWRSILAAQDLLKRGYYWSIASGTKVQVWGDSWLPDNSNRLI 1146 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011163 ID=g.arboreum_cottongen_reftransV1_0011163; Name=g.arboreum_cottongen_reftransV1_0011163; organism=Gossypium arboreum; type=contig; length=1146bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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