g.arboreum_cottongen_reftransV1_0011163, g.arboreum_cottongen_reftransV1_0011163 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: S8D7C7_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_16225 PE=4 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 4.827e-12 Identity = 33/129 (25.58%), Postives = 56/129 (43.41%), Query Frame = -3 Query: 620 FSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKIL------LQRNENYRQKEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIW 988 FS Q IL IPL+++ + L W EY ++GY++L Q + + + LW LP++I WR+ N + NL + + + + + C ET H F C ++ +W Sbjct: 130 FSPSDVQHILAIPLSRNAYPDRLIWHHTRHGEYTTKTGYQLLKGIAELSQPTPSVTNPNLTLFWHFLWKQQLPTRIITFVWRLGKNILPLKENLARRHICPDYVFEVCGIDTETWFHAFVSCPFSRAVW 258 HSP 2 Score: 45.0542 bits (105), Expect = 4.827e-12 Identity = 18/47 (38.30%), Postives = 30/47 (63.83%), Query Frame = -2 Query: 1005 FLSSELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVP 1145 FL + LG PSY+W I +S+ +L + L+W++G S+ + D W+P Sbjct: 44 FLHAPLGRAPSYSWHSIHSSRKVLASGLRWRIGGGNSVNVWHDPWIP 90
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: Q01M84_ORYSA (OSIGBa0135L04.5 protein OS=Oryza sativa GN=OSIGBa0135L04.5 PE=4 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 8.314e-12 Identity = 35/129 (27.13%), Postives = 57/129 (44.19%), Query Frame = -3 Query: 602 AQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQ-----RNENYRQKEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFT 973 A+ IL I L+ E FL+W + + VRS YK+ LQ + E + + +W C++P K+ + WR N + T+ N ++L C C E H C KK+W+ ++ Sbjct: 225 AELILTIRLSARAEEDFLAWHPDKWGVFSVRSAYKLALQLAAIDNGSGSSEAETSKAWNLVWKCNVPQKVKVFTWRAATNSLATMENKNKRKLEATGTCGICGVEAEDVAHALCRCPQAKKMWDAMQVA 353 HSP 2 Score: 32.3426 bits (72), Expect = 8.314e-12 Identity = 18/52 (34.62%), Postives = 25/52 (48.08%), Query Frame = -2 Query: 990 FLSSELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESR 1145 + + G S W+ I LL + W+VGN SI+I D W+P SR Sbjct: 136 LIDTAFGGNASPGWRAIEYGLELLKKGIIWRVGNGHSIRIWRDPWLPRNHSR 187
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: S8BT41_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_17254 PE=4 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.756e-11 Identity = 57/216 (26.39%), Postives = 95/216 (43.98%), Query Frame = -3 Query: 464 RDC*LQDYSGKWVIGKVSKLRKISGFQMWRVGFSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQRNENYRQKEINT------CYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIMLHSTR---EVSQTFICALWAIWSAKNKWMYE 1084 +D L+D+SG W SKLR++ FS + IL IPLA++ + L W Y +++GY +L R E R NT ++ LW LP++I WR N + NL +++ +A C+ C G ET H F C ++ +W + ++ E W+ML+ + E + LW +W + +++ Sbjct: 7 KDFILRDHSG-W---NSSKLRQV---------FSASDVRHILSIPLAKNAYPDRLIWHFSNHGNYTIKTGYNMLKGRAEMSRPSPSNTNNGRSLFWQSLWKLKLPTRILTFGWRFGKNILPLKDNLTRRKICLDATCEICGGGRETWFHAFISCPFSQAVWRMGGTS--WNITDQEPCHPLDWLMLNHQQLRMEHFSGLMVTLWCLWRHRLDYLHN 207 HSP 2 Score: 26.1794 bits (56), Expect = 1.756e-11 Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = -2 Query: 381 WRPPKKDFFKINFDAA 428 W PP DF K+NFD+ Sbjct: 248 WEPPPVDFLKLNFDSG 263
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: A0A0D2R1W6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G043900 PE=4 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.976e-11 Identity = 34/92 (36.96%), Postives = 52/92 (56.52%), Query Frame = -3 Query: 464 TLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIMLHSTREVSQTFICALWAIWSAKNKWMYE 739 TLVNL+ K+++++ +C C G E HVFR C T +IW+ L+ + F +W TWI ST + + F C +W +W +NK M+E Sbjct: 3 TLVNLRFKQVVDDTVCPCCRYGEEDVYHVFRFCPTTIEIWKMLDLSWVNNSMIQSFWDWLTWIFKRSTHKQCRLFCCGMWFLWRLRNKLMHE 94
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: B9EYH0_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_02920 PE=4 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 3.027e-11 Identity = 46/185 (24.86%), Postives = 86/185 (46.49%), Query Frame = -3 Query: 479 FSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKI------LLQRNENYRQKEINTC-----YKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETR-EHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIMLHSTRE--VSQTFICA-LWAIWSAKN 988 F++++A+++L +P+++H E F+SW + + VRS Y + ++ ++ N R + +K LW+ + P K+ I WR + + T L+ + + C C G + R EHVF C +W+ ++ L + E W+ TR + +T + L IW A+N Sbjct: 703 FNDDIAREVLQVPISRHGGEDFVSWPHDKRGLFTVRSAYNLVRSNLFVVAQSSNGRGQHSGANVDSQFWKALWTINAPGKMLIHLWRSVHDCLPTGFQLRRRHVPATEGCIFC--GHDDRIEHVFLVCPFAATVWDAIKEKFQINLCRRELCNIRQWVFDFLTRSSHIQKTVLAVTLRHIWEARN 885 HSP 2 Score: 38.1206 bits (87), Expect = 3.027e-11 Identity = 16/44 (36.36%), Postives = 29/44 (65.91%), Query Frame = -2 Query: 984 SYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESRLL 1115 S+TW+ I + LL ++W VG+ +IKI +D W+P V++ ++ Sbjct: 628 SFTWRSILFGRELLKKGVRWAVGDGSTIKITKDKWIPGVQAGMV 671 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011163 ID=g.arboreum_cottongen_reftransV1_0011163; Name=g.arboreum_cottongen_reftransV1_0011163; organism=Gossypium arboreum; type=contig; length=1146bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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