g.arboreum_cottongen_reftransV1_0011163, g.arboreum_cottongen_reftransV1_0011163 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011163
Unique Nameg.arboreum_cottongen_reftransV1_0011163
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0011163:1..1146 .
Chr9:69996171..69997841 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: S8D7C7_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_16225 PE=4 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 4.827e-12
Identity = 33/129 (25.58%), Postives = 56/129 (43.41%), Query Frame = -3
Query:  620 FSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKIL------LQRNENYRQKEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIW 988
            FS    Q IL IPL+++ +   L W      EY  ++GY++L       Q   +     +   +  LW   LP++I    WR+  N +    NL  + +  + + + C    ET  H F  C  ++ +W
Sbjct:  130 FSPSDVQHILAIPLSRNAYPDRLIWHHTRHGEYTTKTGYQLLKGIAELSQPTPSVTNPNLTLFWHFLWKQQLPTRIITFVWRLGKNILPLKENLARRHICPDYVFEVCGIDTETWFHAFVSCPFSRAVW 258          

HSP 2 Score: 45.0542 bits (105), Expect = 4.827e-12
Identity = 18/47 (38.30%), Postives = 30/47 (63.83%), Query Frame = -2
Query: 1005 FLSSELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVP 1145
            FL + LG  PSY+W  I +S+ +L + L+W++G   S+ +  D W+P
Sbjct:   44 FLHAPLGRAPSYSWHSIHSSRKVLASGLRWRIGGGNSVNVWHDPWIP 90          
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: Q01M84_ORYSA (OSIGBa0135L04.5 protein OS=Oryza sativa GN=OSIGBa0135L04.5 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.314e-12
Identity = 35/129 (27.13%), Postives = 57/129 (44.19%), Query Frame = -3
Query:  602 AQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQ-----RNENYRQKEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFT 973
            A+ IL I L+    E FL+W  +    + VRS YK+ LQ           + E +  +  +W C++P K+ +  WR   N + T+ N   ++L     C  C    E   H    C   KK+W+ ++  
Sbjct:  225 AELILTIRLSARAEEDFLAWHPDKWGVFSVRSAYKLALQLAAIDNGSGSSEAETSKAWNLVWKCNVPQKVKVFTWRAATNSLATMENKNKRKLEATGTCGICGVEAEDVAHALCRCPQAKKMWDAMQVA 353          

HSP 2 Score: 32.3426 bits (72), Expect = 8.314e-12
Identity = 18/52 (34.62%), Postives = 25/52 (48.08%), Query Frame = -2
Query:  990 FLSSELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESR 1145
             + +  G   S  W+ I     LL   + W+VGN  SI+I  D W+P   SR
Sbjct:  136 LIDTAFGGNASPGWRAIEYGLELLKKGIIWRVGNGHSIRIWRDPWLPRNHSR 187          
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: S8BT41_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_17254 PE=4 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.756e-11
Identity = 57/216 (26.39%), Postives = 95/216 (43.98%), Query Frame = -3
Query:  464 RDC*LQDYSGKWVIGKVSKLRKISGFQMWRVGFSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQRNENYRQKEINT------CYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIMLHSTR---EVSQTFICALWAIWSAKNKWMYE 1084
            +D  L+D+SG W     SKLR++         FS    + IL IPLA++ +   L W       Y +++GY +L  R E  R    NT       ++ LW   LP++I    WR   N +    NL  +++  +A C+ C  G ET  H F  C  ++ +W     +    ++  E      W+ML+  +   E     +  LW +W  +  +++ 
Sbjct:    7 KDFILRDHSG-W---NSSKLRQV---------FSASDVRHILSIPLAKNAYPDRLIWHFSNHGNYTIKTGYNMLKGRAEMSRPSPSNTNNGRSLFWQSLWKLKLPTRILTFGWRFGKNILPLKDNLTRRKICLDATCEICGGGRETWFHAFISCPFSQAVWRMGGTS--WNITDQEPCHPLDWLMLNHQQLRMEHFSGLMVTLWCLWRHRLDYLHN 207          

HSP 2 Score: 26.1794 bits (56), Expect = 1.756e-11
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = -2
Query:  381 WRPPKKDFFKINFDAA 428
            W PP  DF K+NFD+ 
Sbjct:  248 WEPPPVDFLKLNFDSG 263          
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: A0A0D2R1W6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G043900 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.976e-11
Identity = 34/92 (36.96%), Postives = 52/92 (56.52%), Query Frame = -3
Query:  464 TLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIMLHSTREVSQTFICALWAIWSAKNKWMYE 739
            TLVNL+ K+++++ +C  C  G E   HVFR C  T +IW+ L+ +         F +W TWI   ST +  + F C +W +W  +NK M+E
Sbjct:    3 TLVNLRFKQVVDDTVCPCCRYGEEDVYHVFRFCPTTIEIWKMLDLSWVNNSMIQSFWDWLTWIFKRSTHKQCRLFCCGMWFLWRLRNKLMHE 94          
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: B9EYH0_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_02920 PE=4 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.027e-11
Identity = 46/185 (24.86%), Postives = 86/185 (46.49%), Query Frame = -3
Query:  479 FSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKI------LLQRNENYRQKEINTC-----YKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETR-EHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIMLHSTRE--VSQTFICA-LWAIWSAKN 988
            F++++A+++L +P+++H  E F+SW  +    + VRS Y +      ++ ++ N R +          +K LW+ + P K+ I  WR   + + T   L+ + +     C  C  G + R EHVF  C     +W+ ++      L + E      W+    TR   + +T +   L  IW A+N
Sbjct:  703 FNDDIAREVLQVPISRHGGEDFVSWPHDKRGLFTVRSAYNLVRSNLFVVAQSSNGRGQHSGANVDSQFWKALWTINAPGKMLIHLWRSVHDCLPTGFQLRRRHVPATEGCIFC--GHDDRIEHVFLVCPFAATVWDAIKEKFQINLCRRELCNIRQWVFDFLTRSSHIQKTVLAVTLRHIWEARN 885          

HSP 2 Score: 38.1206 bits (87), Expect = 3.027e-11
Identity = 16/44 (36.36%), Postives = 29/44 (65.91%), Query Frame = -2
Query:  984 SYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESRLL 1115
            S+TW+ I   + LL   ++W VG+  +IKI +D W+P V++ ++
Sbjct:  628 SFTWRSILFGRELLKKGVRWAVGDGSTIKITKDKWIPGVQAGMV 671          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
S8D7C7_9LAMI4.827e-1225.58Uncharacterized protein (Fragment) OS=Genlisea aur... [more]
Q01M84_ORYSA8.314e-1227.13OSIGBa0135L04.5 protein OS=Oryza sativa GN=OSIGBa0... [more]
S8BT41_9LAMI1.756e-1126.39Uncharacterized protein OS=Genlisea aurea GN=M569_... [more]
A0A0D2R1W6_GOSRA2.976e-1136.96Uncharacterized protein OS=Gossypium raimondii GN=... [more]
B9EYH0_ORYSJ3.027e-1124.86Uncharacterized protein OS=Oryza sativa subsp. jap... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 61..151
e-value: 5.6E-16
score: 59.0
NoneNo IPR availablePANTHERPTHR25952:SF189COPPER ION BINDING / ELECTRON CARRIER PROTEINcoord: 50..207
NoneNo IPR availablePANTHERPTHR25952FAMILY NOT NAMEDcoord: 50..207

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011163 ID=g.arboreum_cottongen_reftransV1_0011163; Name=g.arboreum_cottongen_reftransV1_0011163; organism=Gossypium arboreum; type=contig; length=1146bp
AGTGTCGACATCATTTTGCCCAATCAAAAAGATCTGATTTCTTCCCGTCA
TTTCGTCTGCCCTTGCTTAGTAAAGACGTTTTCAGATTTCCGATGAAAAG
ATTTTACCTTCCCAGCTGTTAGTCTTCTTCCTTTGATCTTTTCTTTTCCA
TCGTTGCCTTCTTCTATTTGCAGCCTGTCTTCCACTCATTTTCCTCTTCT
AAAGATTTTTGTACAGCCATGTATTTTCCTGCTCGATAGATCGTCTTCTC
CTCTTTTGTCCCCGCAACTGGTGTTGTTATTATTTCCAATTAGATTATTT
CCATCTCTGATCTACCTCTGCTTCAGTAATACCATTTCCGTCGGACCCAG
GAGCAAGGATCTGTTCTGTCTGTTATCAAAGGCAGCATCGAAGTTTATCT
TGAAGAAATCTTTTTTCGGGGGCCTCCATAACTCGGATTCCAACCTTAAG
GTCTCCTGTGGTTTTCATACATCCATTTGTTTTTAGCTGACCAGATAGCC
CATAAAGCGCAGATGAAGGTCTGACTAACTTCTCTTGTACTGTGGAGCAT
GATCCAGGTAAACCATTCCATAAACTCTACTTGTGAAAGAGTCTGAGGCC
GTGTAAACTCTAAGTTTTCCCATATTTTTTTTGTGGCAGTGCAATCCCGG
AAGACGTGTTCTCTTGTTTCCAGCCCTTGCAAGCACCTCTGACAAATGGC
CTCATTTATTAGTCGCTTAGCTTTTAGGTTTACTAGAGTAAGGATAAAGT
TAAGGGTGACTCTCCAGGCTGTAATATTAATTTTTGAAGGGAGGTCACAG
CTCCAGAGTTTTTTGTAACATGTATTAATTTCCTTTTGCCTATAATTTTC
ATTTCTTTGTAATAGGATTTTGTAACCGCTGCGCACAAAATACTCTCTAG
ATGCCTCGCCTCGCCAACTCAGAAAGTGTTCGTGAGTGTGCTGAGCCAGT
GGAATTAACAAGATCTTTTGAGCCACCTCTTCAGAGAAGCCGACTCTCCA
CATTTGGAACCCAGAAATCTTCCTCAATTTTGATACTTTGCCTATTACCC
ACTTTCCACTGTAATCTTGCAATCAGCAGTCCCTTTGAAGCCCATATACC
TTTCCAAGTATATGATGGTAAGCTCCCTAACTCTGAGCTTAAAAAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR026960RVT-Znf