g.arboreum_cottongen_reftransV1_0011163, g.arboreum_cottongen_reftransV1_0011163 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: C5YAU3_SORBI (Putative uncharacterized protein Sb06g020406 (Fragment) OS=Sorghum bicolor GN=Sb06g020406 PE=4 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.354e-13 Identity = 53/185 (28.65%), Postives = 89/185 (48.11%), Query Frame = -3 Query: 461 AQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQ---RNENYRQKEINTC--------YKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFME---WFTWIMLHSTREVSQTFICALWAIWSAKNKWMYEN 973 ++ IL +PL+ + +W E + + VRS Y++L++ E+Y + N +KKLWS LPSKI + WR+ LN I T LK++ L + + C+ C +T EH CT +K +W L+ +S + W T++ + + + WAIW A+ K ++E Sbjct: 13 SEAILQMPLSMRKQKDCWAWHHEKNGLFTVRSAYRMLIELKKSREDYFEGRANCSDFATSQKEWKKLWSMKLPSKIKVFCWRLALNSIPTASVLKSRNLASTSHCKICGAVDDTWEHSLLFCTMSKCVWALLDEDITNLISHLRISNPKHWITFMCCNIPQADGIRVLVTCWAIWQARRKAIHEG 197 HSP 2 Score: 27.7202 bits (60), Expect = 1.354e-13 Identity = 14/55 (25.45%), Postives = 25/55 (45.45%), Query Frame = -2 Query: 327 QETLRLESELWRPPKKDFFKINFDAAFDN-----------RQNRSLLLGPTEMVL 458 Q + ++ LW+ P + KIN DAA + R +R + P+ M++ Sbjct: 229 QNQSKQKTRLWKAPDQGKCKINVDAAVNRVGSKGAVGVVCRNDRGEFIAPSAMII 283
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: I6M4U0_MAIZE (Putative ZmL1 non-LTR retrotransposon protein OS=Zea mays PE=4 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.824e-13 Identity = 51/185 (27.57%), Postives = 89/185 (48.11%), Query Frame = -3 Query: 476 RVGFSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQRNENYRQKEINT--------CYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWE--NLEFTRPQTLSQVEFMEWFTWIMLHSTREVSQT-FICALWAIWSAKNK 997 R F +E A IL IP+ Q E L+W G+ + V+S Y + +R +++ + ++ +K +W+ ++ +KI + WR+ N VN+ + + E +C C + E H+F C K++W LE TR S+ +E I+ + RE ++ + LW WSA+NK Sbjct: 84 RDTFLQEDADCILAIPI-QEGMEDTLAWHGDPKGNFSVKSAYALASRRRDHHNNADASSSISGRGENVWKSIWNVNVTNKIKMFLWRLAHNSHPVRVNIARRGIKIETLCPMCFRLDEDGGHLFLKCKKVKQVWRCLCLEDTRTLLASKASALEVIESIL--TLREETKIKVVLLLWCWWSARNK 265 HSP 2 Score: 34.2686 bits (77), Expect = 1.824e-13 Identity = 18/52 (34.62%), Postives = 26/52 (50.00%), Query Frame = -2 Query: 990 FLSSELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESR 1145 FL E SYTW+ + LL L W++G+ + I D W+P E+R Sbjct: 2 FLKQEQKKGISYTWRNVLKGLHLLKEGLIWRIGDGNQVNIWVDPWIPRGETR 53
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: A0A0A8XVJ3_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.965e-13 Identity = 52/184 (28.26%), Postives = 81/184 (44.02%), Query Frame = -3 Query: 479 FSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKIL-----------LQRNENYRQKEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWI---MLHSTREVSQTFICALWAIWSAKN 988 F+E A++IL IPL+Q+ F+SW + Y V+S Y + R Q + +K+LW P K+ I WR N + T LK++ + +C C + ET EHVF C T +IW L+ + F+ W+ + ST + + + W IW A+N Sbjct: 69 FNEADAKRILSIPLSQNPLHDFVSWLHTRTGIYTVKSAYVMARTESAHLYTSASGRGATSNQTSTSKEWKRLWGIRAPPKVRIILWRFAHNCLPTGQQLKSRNIPAPDVCYHCGRE-ETMEHVFLTCQYTAEIWRELKRVYGMATRHINFVNAGQWLFDFLARSTEQEATILAISFWRIWEARN 251 HSP 2 Score: 26.1794 bits (56), Expect = 1.965e-13 Identity = 11/28 (39.29%), Postives = 19/28 (67.86%), Query Frame = -2 Query: 1002 KGLLIARLQWKVGNRQSIKIEEDFWVPN 1085 K LL + W+ GN ++I++ +D WVP+ Sbjct: 4 KRLLDRGIIWRGGNGENIRLAQDKWVPD 31
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: A0A0A9TVZ9_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.014e-13 Identity = 52/184 (28.26%), Postives = 81/184 (44.02%), Query Frame = -3 Query: 479 FSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKIL-----------LQRNENYRQKEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWI---MLHSTREVSQTFICALWAIWSAKN 988 F+E A++IL IPL+Q+ F+SW + Y V+S Y + R Q + +K+LW P K+ I WR N + T LK++ + +C C + ET EHVF C T +IW L+ + F+ W+ + ST + + + W IW A+N Sbjct: 69 FNEADAKRILSIPLSQNPLHDFVSWLHTRTGIYTVKSAYVMARTESAHLYTSASGRGATSNQTSTSKEWKRLWGIRAPPKVRIILWRFAHNCLPTGQQLKSRNIPAPDVCYHCGRE-ETMEHVFLTCQYTAEIWRELKRVYGMATRHINFVNAGQWLFDFLARSTEQEATILAISFWRIWEARN 251 HSP 2 Score: 26.1794 bits (56), Expect = 2.014e-13 Identity = 11/28 (39.29%), Postives = 19/28 (67.86%), Query Frame = -2 Query: 1002 KGLLIARLQWKVGNRQSIKIEEDFWVPN 1085 K LL + W+ GN ++I++ +D WVP+ Sbjct: 4 KRLLDRGIIWRGGNGENIRLAQDKWVPD 31
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: M5XIV5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025799mg PE=4 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 3.427e-13 Identity = 47/188 (25.00%), Postives = 82/188 (43.62%), Query Frame = -3 Query: 461 QMWRVGFSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQRN------ENYRQKEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFMEWFTWIMLHSTREVSQTFICALWAIWSAKNKWMYEN 1006 ++ + F E+ + IL IPLA E L + S +Y V+SGY + + E ++ +KKLW + +KI WR F+ + NL ++++N IC RC + +E+ H IW E F E + +++ S++E F W IW+ +N +++ Sbjct: 627 ELLKANFWEQEVKAILQIPLASIHREDKLICHYDRSGKYSVKSGYMVACMKKQRENGMEGSSTQDGTLLWKKLWRLQVLNKIKFFLWRCIWGFLPSRQNLYHRKILNSPICPRCGKKVESINHA---------IWACNESANRHEWRITSFKELWQSVIVVSSKEEVDLFAFLCWDIWNDRNNLLFQG 805 HSP 2 Score: 40.0466 bits (92), Expect = 3.427e-13 Identity = 21/47 (44.68%), Postives = 27/47 (57.45%), Query Frame = -2 Query: 1005 FLSSELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVP 1145 FL S LG PS W + K LL A L+W+V N + I + +D WVP Sbjct: 549 FLESGLGYQPSLIWSSLIWGKDLLKAGLRWRVENGEDIHVYQDRWVP 595
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: M8B4I9_TRIUA (Cyclopropane-fatty-acyl-phospholipid synthase OS=Triticum urartu GN=TRIUR3_11871 PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 4.669e-13 Identity = 60/202 (29.70%), Postives = 95/202 (47.03%), Query Frame = -3 Query: 440 QMWRVGFSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKI---LLQRNENYRQKEIN-------TCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWE--NLEFTRPQTLSQVEFMEWFTWIMLHSTREVSQTFICALWAIWSAKNKWMYENHR-RP*GW 1006 Q+ R F+ E A IL IP+ QH HE FL+W+ + + VRS Y++ +L+R +Q E + +++LW P K++ WRV N L N++ + + C C + E H+F C KK+W +LE R L + E +I E IC LW W+ +NK ++ +R +P G+ Sbjct: 966 QLVRQTFNTEEAAVILKIPVFQH-HEDFLAWQFDTKELFSVRSAYRVQIDMLKRQARRQQGESSLGDTGNSKLWQELWKVKCPGKVHHFMWRVAHNSHPMLRNIERIGVELDTTCVICHRLPEDGSHLFFRCKEVKKVWRVCDLEAIRLDLLQCLSPHELLLYIFA-LPEEKKLKIICLLWLWWTERNKANHKQNRAKPEGF 1165 HSP 2 Score: 30.0314 bits (66), Expect = 4.669e-13 Identity = 13/43 (30.23%), Postives = 23/43 (53.49%), Query Frame = -2 Query: 987 SYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESRL 1115 SY W+ I ++ + W+VG ++I+I +D W+P R Sbjct: 897 SYVWRSILQGVEVIKEGMVWRVGTGENIRIWQDPWLPTCAVRF 939
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: A0A061F9K1_THECC (Retrotransposon, unclassified-like protein OS=Theobroma cacao GN=TCM_033177 PE=4 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.237e-12 Identity = 46/181 (25.41%), Postives = 73/181 (40.33%), Query Frame = -3 Query: 464 RVGFSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKIL--LQRNENYRQKEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLEFTRPQTLSQVEFM-EWFTWIMLHSTREVSQTFICALWAIWSAKNKWMYE 997 RV F IL +PL+ +L+W Y + GYK+L R + I KK W ++P KI + WRV + T L + + A C LE H+ +C+ K +W ++ Q + EWF + R + + C +WAIW N +++ Sbjct: 78 RVCFPPHECSIILALPLSLRFLADWLAWHHSRDGNYTTKLGYKLLSSTSRTDVSTSGNIIPECKKFWCLNIPRKIFLFIWRVLHGCLPTQATLNRRNIAINACYPMCNADLEMDCHILCECSFAKAVWLACKWGFCDNDHQFSSLKEWFLLRLQKLDRIIVEELCCVMWAIWKGHNSLVFK 258 HSP 2 Score: 36.5798 bits (83), Expect = 1.237e-12 Identity = 19/49 (38.78%), Postives = 30/49 (61.22%), Query Frame = -2 Query: 984 LGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESRLL 1130 +GS PSY W I S+ L+ + WK+G+ Q+I+ + D W+P S L+ Sbjct: 1 MGSNPSYLW-SIRESQSLINRGVSWKIGDGQNIRAKLDNWIPYDTSHLV 48
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: M5WGA2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023640mg PE=4 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.468e-12 Identity = 54/190 (28.42%), Postives = 77/190 (40.53%), Query Frame = -3 Query: 452 FSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGY----KILLQRN---ENYRQKEINTC---YKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLE-FTRPQTLSQVEFMEWFTWIMLHSTREVSQTFICALWAIWSAKNKWMYENHRR 988 FS E I IPL+ L W E +Y VRSGY ++LLQ++ N + I C +KK+W +P K+ I WR LN + T NL + + C C ET HV C W + T + EF WF V + + LW W +N+ ++ +R Sbjct: 73 FSAEEVNCIRNIPLSFRHPPDTLIWHFERDGQYTVRSGYEVARRVLLQQDGDDTNMNRGPIVACEQVWKKIWKARVPPKVCIFIWRALLNILPTKDNLIHRSISELGGCVFC-GAEETVAHVLLRCPMAIASWSLFPAWAHFNTDATEEFKMWFQGFAADHPLHVLERVMVCLWMPWYERNQKVWAGRQR 261 HSP 2 Score: 38.891 bits (89), Expect = 1.468e-12 Identity = 16/48 (33.33%), Postives = 30/48 (62.50%), Query Frame = -2 Query: 993 SELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVES 1136 +++ PSY W+ + ++ L+ +W++GN S++I D W+PN ES Sbjct: 1 AQIRHCPSYIWQSLCNARVLIEKGSRWQIGNGHSVRIWGDRWLPNSES 48
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: F4NCJ4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 3.689e-12 Identity = 47/182 (25.82%), Postives = 82/182 (45.05%), Query Frame = -3 Query: 449 FSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGYKILLQRNENYRQKEINTCYKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLE--FTRPQTLSQVEFMEWFTWIMLHSTREVSQTFICALWAIWSAKNKWMYENHRRP 988 F+E Q IL IPL+ + L+W Y V++ Y +L + N + + + LWS ++ K+ WR + + L+ + LI+EA C C + ET+ H+F C + K+WE L P + W + + +V Q LW +W +N+ ++E+ +P Sbjct: 986 FNERDQQCILAIPLSTRCLQDELTWAYSKDGTYSVKTAY--MLGKGGNL--DDFHRVWNILWSLNVSPKVRHFLWRACTSSLPVRKVLQRRHLIDEAGCPCCAREDETQFHLFYRCPMSLKLWEELGSYILLPGIEDEAMCDTLVRWSQMDA--KVVQKGCYILWNVWVERNRRVFEHTSQP 1161 HSP 2 Score: 38.5058 bits (88), Expect = 3.689e-12 Identity = 19/51 (37.25%), Postives = 29/51 (56.86%), Query Frame = -2 Query: 984 SELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVESRLL 1136 + LG SY+W+ IW +K L++ L W+VG+ I I WV + E R + Sbjct: 905 ARLGYSHSYSWRSIWGAKSLVLEGLIWRVGDGTKIDIWSAPWVGDEEGRFI 955
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Match: M5W5K8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020282mg PE=4 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 4.478e-12 Identity = 50/161 (31.06%), Postives = 66/161 (40.99%), Query Frame = -3 Query: 560 FQMWRVGFSEEVAQKILLIPLAQHTHEHFLSWRGEASREYFVRSGY----KILLQRNE---NYRQKEINTC---YKKLWSCDLPSKINITAWRVTLNFILTLVNLKAKRLINEAICQRCLQGLETREHVFRDCTATKKIWENLE-FTRPQTLSQVEFMEWF 1009 Q W FS E I IPL+ L W E +Y VRSG+ ++LLQ++ N I C +KK+W +P K+ I WR LN + T NL +R+ C C ET HV C W + T + EF WF Sbjct: 1340 LQAW---FSAEEVNCIRNIPLSFRHPPDILIWHFERDGQYTVRSGHDVARRVLLQQDGDDTNMNGGPIVACEQVWKKIWKARVPPKVRIFIWRALLNILPTKDNLIHRRISELRGCVFC-GAEETVAHVLLRCPMAIASWSLFPAWAHFNTDATEEFKMWF 1496 HSP 2 Score: 44.669 bits (104), Expect = 4.478e-12 Identity = 18/50 (36.00%), Postives = 32/50 (64.00%), Query Frame = -2 Query: 993 LSSELGSLPSYTWKGIWASKGLLIARLQWKVGNRQSIKIEEDFWVPNVES 1142 L +++G PSY W+ + ++ L+ +W++GN S++I D W+PN ES Sbjct: 1259 LEAQIGHSPSYIWQSLCKARVLIEKGSRWRIGNGHSVRIWGDRWLPNSES 1308 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0011163 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0011163 ID=g.arboreum_cottongen_reftransV1_0011163; Name=g.arboreum_cottongen_reftransV1_0011163; organism=Gossypium arboreum; type=contig; length=1146bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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