g.arboreum_cottongen_reftransV1_0015579, g.arboreum_cottongen_reftransV1_0015579 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: A0A0B0MHP9_GOSAR (UDP-glucose 6-dehydrogenase OS=Gossypium arboreum GN=F383_13344 PE=4 SV=1) HSP 1 Score: 475.322 bits (1222), Expect = 5.401e-163 Identity = 258/259 (99.61%), Postives = 258/259 (99.61%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFGSSPKRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTNEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSAGVCGKRVGFEEIFGSSPKRFRCSGYESPNSSSDPGSRPDDRVSTFSALDPELRTSVVDTNEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEE IEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRAQAQQSSSIKGQFPPDIY Sbjct: 1 MSAGVCGKRVGFEEIFGSSPKRFRCSGYESPNSSSDPGSRPDDRVSTFSALDPELRTSVVDTNEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEE-IEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRAQAQQSSSIKGQFPPDIY 258
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: A0A0D2SZG7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G174300 PE=4 SV=1) HSP 1 Score: 472.241 bits (1214), Expect = 1.166e-161 Identity = 254/259 (98.07%), Postives = 255/259 (98.46%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFGSSPKRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTNEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSAGVCGKRVGFEEIFGSSPKRFRCSGYESPNSSSDPGSRPDDRVSTFSALDPELRTSVVD NEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQ FYDRNAVN PEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKE+LRSLLDNNQILRR VAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRAQAQQSSSIKGQFPPDIY Sbjct: 1 MSAGVCGKRVGFEEIFGSSPKRFRCSGYESPNSSSDPGSRPDDRVSTFSALDPELRTSVVDKNEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQKFYDRNAVNGPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEYLRSLLDNNQILRRTVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRAQAQQSSSIKGQFPPDIY 259
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: A0A0D2QBS0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G174300 PE=4 SV=1) HSP 1 Score: 465.307 bits (1196), Expect = 4.567e-159 Identity = 253/259 (97.68%), Postives = 254/259 (98.07%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFGSSPKRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTNEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSAGVCGKRVGFEEIFGSSPKRFRCSGYESPNSSSDPGSRPDDRVSTFSALDPELRTSVVD NEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQ FYDRNAVN PEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEE IEHASLKE+LRSLLDNNQILRR VAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRAQAQQSSSIKGQFPPDIY Sbjct: 1 MSAGVCGKRVGFEEIFGSSPKRFRCSGYESPNSSSDPGSRPDDRVSTFSALDPELRTSVVDKNEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQKFYDRNAVNGPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEE-IEHASLKEYLRSLLDNNQILRRTVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRAQAQQSSSIKGQFPPDIY 258
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: A0A0D2RXV8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G174300 PE=4 SV=1) HSP 1 Score: 448.743 bits (1153), Expect = 1.336e-152 Identity = 246/259 (94.98%), Postives = 247/259 (95.37%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFGSSPKRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTNEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSAGVCGKRVGFEEIFGSSPKRFRCSGYESPNSSSDPGSRPDDRVSTFSALDPELRTSVVD NEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQ FYDRNAVN PEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEE E+LRSLLDNNQILRR VAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRAQAQQSSSIKGQFPPDIY Sbjct: 1 MSAGVCGKRVGFEEIFGSSPKRFRCSGYESPNSSSDPGSRPDDRVSTFSALDPELRTSVVDKNEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQKFYDRNAVNGPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEE--------EYLRSLLDNNQILRRTVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRAQAQQSSSIKGQFPPDIY 251
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: B9SP22_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1248750 PE=4 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 4.412e-64 Identity = 148/273 (54.21%), Postives = 182/273 (66.67%), Query Frame = -3 Query: 516 MSAGVCGKRVGFEEIFGSS--PKRFRCSGYEXXXXXXXXXXXXXXXXST----FSALDPEL-RTSVVDTNEDFKESSNALS----SDLEERNKQYGFDCVRTGNCTD----ETATCSQISDYNVEDVNKQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDI 1289 MSAGVCGKRVGFEEIFGSS KR RCSG+ SP S+D GS DD + T F +LDPEL RT+ + N ++ L D ERNK F+ GNC C Q+ + VE K + Y+ NAV+ +W DLFV EM +A ++DDA+ R+A+ILEAFER + A E Q+E SLKEHL+SLL++NQIL+RAVAIQHERN+EQE K +EVQ+LKL LNQY EQ R+LELNNY L+LHLQR AQQ+S+I G F PDI Sbjct: 1 MSAGVCGKRVGFEEIFGSSSAAKRSRCSGFGSPTRSTDFGSGSDDTLFTLLQMFPSLDPELVRTAHRNHNNKVDDAVKTLMKISFGDAVERNKLQSFESATIGNCDAVPPMSMTACLQMPEEEVE--KKASDYE-NAVDGSKWVDLFVQEMMNAADLDDARRRSAQILEAFERSITAQANRLE-QLELTSLKEHLQSLLNDNQILKRAVAIQHERNLEQEEKTKEVQNLKLLLNQYQEQIRSLELNNYALKLHLQR--AQQNSNIPGHFNPDI 267
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: D7THR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g00080 PE=4 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 1.875e-59 Identity = 139/284 (48.94%), Postives = 170/284 (59.86%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFG--------------SSPKRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTN----EDFKESSNALS-SDLEERNKQYGFDCVRTGNCTDETATC----SQISDYNVEDVN--KQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSAGVCGKRVGFEEIFG SP R G S + F LD E+ +V+ T+ ED ES +ALS D RN+ G D GN A Q ++ VEDV K F NA++ +W DLFVHEM +A ++ DA+ARAARILEAFE+ VV++ +E +EHASLKEHL++ L +NQIL+RAVAIQH+RN+EQE + REVQ LK + QY EQ R LELNNYTL+LHLQR AQ SSSI GQF PDI+ Sbjct: 1 MSAGVCGKRVGFEEIFGSSSTSSKRSRCSTFGSPVRSSDFG-------SGSDDSVSVLLQMFPNLDREMVETVLRTHNNKIEDAIESLHALSLGDTIARNESQGLDSAMMGNNDTGPAQSEHEYGQTTEQKVEDVQDLKSMFEFGNAMDGSKWVDLFVHEMMNATDLSDARARAARILEAFEKNVVSHSMELKE-LEHASLKEHLQNFLRDNQILKRAVAIQHDRNLEQEERAREVQQLKDVIRQYQEQVRALELNNYTLKLHLQR--AQGSSSIPGQFHPDIF 274
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: V4SYJ0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012475mg PE=4 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 1.042e-57 Identity = 138/272 (50.74%), Postives = 179/272 (65.81%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFGSS----PKRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTN----EDFKESSNALS-SDLEERNKQYGFDCVRTGN---CTDETAT-CSQISDYNVEDVNKQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSAGVCGKRVGFEEI GSS KR RCS + S + F +DPE+ SV+ + ED + LS S++ ER K G + GN E+AT CSQ+S+ V + NF N + +W DLFVHEM SA ++DDA+ RAARILE FER ++ N +A++E +EHASLKEHL+SLL++NQIL++AV+IQHER++EQE KE+EV+ LKL ++QY +QAR LEL NY L+LHLQR AQ+SSSI QF PDI+ Sbjct: 1 MSAGVCGKRVGFEEICGSSSPTSAKRSRCSTF-GSLVRSGSDDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNISERIKSQGLEPTIIGNFSAVPGESATSCSQMSEEEVRSAHT-NFCGENITDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKE-LEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQR--AQESSSIPRQFHPDIF 267
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: A0A067DQ87_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023249mg PE=4 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 1.042e-57 Identity = 138/272 (50.74%), Postives = 179/272 (65.81%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFGSS----PKRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTN----EDFKESSNALS-SDLEERNKQYGFDCVRTGN---CTDETAT-CSQISDYNVEDVNKQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSAGVCGKRVGFEEI GSS KR RCS + S + F +DPE+ SV+ + ED + LS S++ ER K G + GN E+AT CSQ+S+ V + NF N + +W DLFVHEM SA ++DDA+ RAARILE FER ++ N +A++E +EHASLKEHL+SLL++NQIL++AV+IQHER++EQE KE+EV+ LKL ++QY +QAR LEL NY L+LHLQR AQ+SSSI QF PDI+ Sbjct: 1 MSAGVCGKRVGFEEICGSSSPTSAKRSRCSTF-GSLVRSGSDDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNISERIKSQGLEPTIIGNFSAVPGESATSCSQMSEEEVRSAHT-NFCGENITDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKE-LEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQR--AQESSSIPRQFHPDIF 267
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: V4STG0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012475mg PE=4 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 1.765e-54 Identity = 133/268 (49.63%), Postives = 173/268 (64.55%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFGSS----PKRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTN----EDFKESSNALS-SDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSAGVCGKRVGFEEI GSS KR RCS + S + F +DPE+ SV+ + ED + LS S++ ER K G + G SQ+S+ V + NF N + +W DLFVHEM SA ++DDA+ RAARILE FER ++ N +A++E +EHASLKEHL+SLL++NQIL++AV+IQHER++EQE KE+EV+ LKL ++QY +QAR LEL NY L+LHLQR AQ+SSSI QF PDI+ Sbjct: 1 MSAGVCGKRVGFEEICGSSSPTSAKRSRCSTF-GSLVRSGSDDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNISERIKSQGLEPTIIG---------SQMSEEEVRSAHT-NFCGENITDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKE-LEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQR--AQESSSIPRQFHPDIF 254
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: A0A067DXI5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023249mg PE=4 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 1.765e-54 Identity = 133/268 (49.63%), Postives = 173/268 (64.55%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFGSS----PKRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTN----EDFKESSNALS-SDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSAGVCGKRVGFEEI GSS KR RCS + S + F +DPE+ SV+ + ED + LS S++ ER K G + G SQ+S+ V + NF N + +W DLFVHEM SA ++DDA+ RAARILE FER ++ N +A++E +EHASLKEHL+SLL++NQIL++AV+IQHER++EQE KE+EV+ LKL ++QY +QAR LEL NY L+LHLQR AQ+SSSI QF PDI+ Sbjct: 1 MSAGVCGKRVGFEEICGSSSPTSAKRSRCSTF-GSLVRSGSDDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNISERIKSQGLEPTIIG---------SQMSEEEVRSAHT-NFCGENITDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKE-LEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLELRNYALKLHLQR--AQESSSIPRQFHPDIF 254 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0015579 ID=g.arboreum_cottongen_reftransV1_0015579; Name=g.arboreum_cottongen_reftransV1_0015579; organism=Gossypium arboreum; type=contig; length=1585bpback to top |