g.arboreum_cottongen_reftransV1_0015579, g.arboreum_cottongen_reftransV1_0015579 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: D7TC54_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05730 PE=4 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 1.766e-34 Identity = 112/292 (38.36%), Postives = 152/292 (52.05%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFGSSP--KRFRCSG-----YEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTNEDF-----KESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVE---DVNKQNFYDRN---------------AVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHAS---LKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSA VCGKR FE++ + P KR RCS + P S S S+ S S LD LR D ++ F +E N L S ++ N+ +R G+ + + SD +E + Q N +++ EW +LFV EM SA N+DDA+ARA+R LE E+ + A A Q H LKE + +LL N IL+RAV+IQHER E E + +E+QHLK + QY EQ RTLE+NNY L +HL++ AQQSSSI G F PD++ Sbjct: 1 MSAIVCGKRSFFEDLPTTPPVSKRIRCSSSSPVRFSPPRSISASPSQSQSTASQASVLD-HLRALFPDMDKQFLEKALEECGNDLDSTIKSLNE------LRLGSAQNNLGFGAGTSDVGLETKVQLQSQGVAATNGEVVSSEDPSAPKNLSMDGAEWVELFVREMMSASNMDDARARASRALEVLEKSICARASAEAAQSFHQENLMLKEQVEALLQENIILKRAVSIQHERQKESEERNQELQHLKQVVTQYQEQLRTLEVNNYALSMHLRQ--AQQSSSIPGHFHPDVF 283
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: A0A067G1J7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023202mg PE=4 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 7.274e-34 Identity = 104/281 (37.01%), Postives = 152/281 (54.09%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEE-IFGSSP---KRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTNEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQNFYDRNA---------------VNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQI---EHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSA +CGKR FE+ + +SP KR RCS SP S P S + +A+ P++ ++D +E + L S + N+ +R G+ + + + SD D N Q N ++ PEW +LFV EM S+ NIDDA+ARA+R LE E+ + A A Q E+ LKE + +L+ N IL+RAV+IQHER E E + +E+ HLK ++QY EQ RTLE+NNY L +HL++ A+ S+SI G+F PD++ Sbjct: 1 MSAILCGKRSFFEDNLAATSPPVSKRIRCSS-SSPVRFSPPRSSRSHLLDQLAAIFPDMDNQILD--RALEECGDDLDSAIRSLNE------LRLGSADNNLGSVAGKSDL-AADANAQGVATTNGEVPSPDDPSASKVFQLDGPEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQ--AEHSNSIPGRFHPDVF 269
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: A0A022PZ98_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a011845mg PE=4 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 8.247e-34 Identity = 110/276 (39.86%), Postives = 155/276 (56.16%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFGSSP--------KRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTNEDFKESSNALSSDLEERNKQY-GFDCVRTGNCTDETATCSQISDYNVED-VNKQNFYDRN--AVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQI-----EHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSA V GKR F+++ SSP K+FRCS SP + V AL P+ T + + ++S N L ++ ++ Y G+ +G+ ++E Q + D VN Q ++ VN EW DLFV EM SA +IDDA++RAARILE+ E+ + N RA+ E E LKE + +L+ +N IL+RAVAIQ+ER E + + +EVQ LK + QY E+ RTLE+NNY L LHL + AQQSSSI G+F PD++ Sbjct: 1 MSAMVYGKRSFFDDM-DSSPESAPQPAYKKFRCSSSASPVPFTYSPPVQTSLVDQLKALFPD--TEIQFLEKALEDSGNDLDLAIKSIHELYDGYSKGNSGSASEENNIIEQGATPTSGDAVNLQEPQVQSNLPVNGTEWVDLFVTEMMSATSIDDARSRAARILESLEKSI--NSRASAESAQSFHKESVMLKEQMEALVRDNAILKRAVAIQYERQKENDERSQEVQQLKQMVAQYQERVRTLEVNNYALTLHLSQ--AQQSSSIPGRFHPDVF 269
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: B9RV91_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0901070 PE=4 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.834e-33 Identity = 105/273 (38.46%), Postives = 151/273 (55.31%), Query Frame = -3 Query: 513 MSAGVCGKRVG---FEEIFGSSP--KRFRCSGYEXXXXXXXXXXXXXXXXST-FSALDPELRTSVVDTNEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQ---NFYDRN--AVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRV---VANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSA VCG + F+E F S+P KR RCS P+ P P + + F LDP+L ++ E N L S ++ N+Q +C E A + D ++ + N V+ EW DL V EM SA ++DDAK+RA+R+LEA E+ + A++ A + E LKE + +L+ +N IL+RAVAIQHER E E K RE+Q LK ++QY EQ ++LE+NNYTL +HL++ A+QSS I G+F PD++ Sbjct: 1 MSAIVCGSKRSHYYFDEEFPSTPVSKRHRCSSSSPPHVRFSPPPSPFLHLKSLFPLLDPQLLEKALE------ECGNDLESAIKSLNEQ--------NSCFVEEAAPKPVQDALPDEGDATASGNVAPPTNLPVDGAEWVDLLVREMMSATSVDDAKSRASRVLEALEKSIHMHAADETAQSFEKESVMLKEQIEALIRDNTILKRAVAIQHERQKEFEEKNRELQQLKQLVSQYQEQLKSLEVNNYTLMMHLRQ--AEQSSPIPGRFHPDVF 257
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: A9PBC1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12730g PE=2 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 5.416e-33 Identity = 106/298 (35.57%), Postives = 152/298 (51.01%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFGSSP---KRFRCSGYEXXXXXXXXXXXXXXXXSTF----------------SALDPELRTSVVDTNEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQNFYDRNAVNSP---------------EWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQI-----EHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSA VCGKR FEE+ +SP KR RCS S + +F +A+ P++ +++ + +E + L S + N +R G+ + +A + + +V Q A P EW +LFV EM SA NIDDA+ARA+R LE E+ + A RA E + EH LKE +++L+ N IL+RAV+IQHER E E + +E+Q LK ++QY +Q RTLE+NNY L LHL++ AQQSSSI G+F PD++ Sbjct: 1 MSAIVCGKRSFFEELTVTSPPVSKRIRCSSSSPVRFSPPRSNTLASNPPSFNFGSSSSSSSTLIEQLAAIFPDMDKQLIE--KVLEECGDDLDSAIRSLND------LRLGSAENFSAAADKSDVIDESNVPAQGVATTGAEAPPTEDLSASAHLSLDGAEWVELFVREMMSASNIDDARARASRALEVLEKSICA--RAGAEAVKNFHQEHMILKEQVQALIQENTILKRAVSIQHERQKEYEERNQEMQQLKQLVSQYQDQLRTLEVNNYALTLHLKQ--AQQSSSIPGRFHPDVF 286 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0015579 ID=g.arboreum_cottongen_reftransV1_0015579; Name=g.arboreum_cottongen_reftransV1_0015579; organism=Gossypium arboreum; type=contig; length=1585bpback to top |