g.arboreum_cottongen_reftransV1_0015579, g.arboreum_cottongen_reftransV1_0015579 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0015579
Unique Nameg.arboreum_cottongen_reftransV1_0015579
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1585
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0015579:1..1585 .
Chr11:77596518..77598649 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: D7TC54_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05730 PE=4 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.766e-34
Identity = 112/292 (38.36%), Postives = 152/292 (52.05%), Query Frame = -3
Query:  513 MSAGVCGKRVGFEEIFGSSP--KRFRCSG-----YEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTNEDF-----KESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVE---DVNKQNFYDRN---------------AVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHAS---LKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289
            MSA VCGKR  FE++  + P  KR RCS      +  P S S   S+     S  S LD  LR    D ++ F     +E  N L S ++  N+      +R G+  +     +  SD  +E    +  Q     N               +++  EW +LFV EM SA N+DDA+ARA+R LE  E+ + A   A   Q  H     LKE + +LL  N IL+RAV+IQHER  E E + +E+QHLK  + QY EQ RTLE+NNY L +HL++  AQQSSSI G F PD++
Sbjct:    1 MSAIVCGKRSFFEDLPTTPPVSKRIRCSSSSPVRFSPPRSISASPSQSQSTASQASVLD-HLRALFPDMDKQFLEKALEECGNDLDSTIKSLNE------LRLGSAQNNLGFGAGTSDVGLETKVQLQSQGVAATNGEVVSSEDPSAPKNLSMDGAEWVELFVREMMSASNMDDARARASRALEVLEKSICARASAEAAQSFHQENLMLKEQVEALLQENIILKRAVSIQHERQKESEERNQELQHLKQVVTQYQEQLRTLEVNNYALSMHLRQ--AQQSSSIPGHFHPDVF 283          
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: A0A067G1J7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023202mg PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.274e-34
Identity = 104/281 (37.01%), Postives = 152/281 (54.09%), Query Frame = -3
Query:  513 MSAGVCGKRVGFEE-IFGSSP---KRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTNEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQNFYDRNA---------------VNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQI---EHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289
            MSA +CGKR  FE+ +  +SP   KR RCS   SP   S P S     +   +A+ P++   ++D     +E  + L S +   N+      +R G+  +   + +  SD    D N Q     N                ++ PEW +LFV EM S+ NIDDA+ARA+R LE  E+ + A   A   Q    E+  LKE + +L+  N IL+RAV+IQHER  E E + +E+ HLK  ++QY EQ RTLE+NNY L +HL++  A+ S+SI G+F PD++
Sbjct:    1 MSAILCGKRSFFEDNLAATSPPVSKRIRCSS-SSPVRFSPPRSSRSHLLDQLAAIFPDMDNQILD--RALEECGDDLDSAIRSLNE------LRLGSADNNLGSVAGKSDL-AADANAQGVATTNGEVPSPDDPSASKVFQLDGPEWVELFVREMMSSSNIDDARARASRALEILEKSICARASAEAAQSFHQENKMLKEQVEALIQENMILKRAVSIQHERQKEYEDRSQELHHLKQLVSQYQEQLRTLEVNNYALTMHLKQ--AEHSNSIPGRFHPDVF 269          
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: A0A022PZ98_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a011845mg PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 8.247e-34
Identity = 110/276 (39.86%), Postives = 155/276 (56.16%), Query Frame = -3
Query:  513 MSAGVCGKRVGFEEIFGSSP--------KRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTNEDFKESSNALSSDLEERNKQY-GFDCVRTGNCTDETATCSQISDYNVED-VNKQNFYDRN--AVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQI-----EHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289
            MSA V GKR  F+++  SSP        K+FRCS   SP   +         V    AL P+  T +    +  ++S N L   ++  ++ Y G+    +G+ ++E     Q +     D VN Q    ++   VN  EW DLFV EM SA +IDDA++RAARILE+ E+ +  N RA+ E       E   LKE + +L+ +N IL+RAVAIQ+ER  E + + +EVQ LK  + QY E+ RTLE+NNY L LHL +  AQQSSSI G+F PD++
Sbjct:    1 MSAMVYGKRSFFDDM-DSSPESAPQPAYKKFRCSSSASPVPFTYSPPVQTSLVDQLKALFPD--TEIQFLEKALEDSGNDLDLAIKSIHELYDGYSKGNSGSASEENNIIEQGATPTSGDAVNLQEPQVQSNLPVNGTEWVDLFVTEMMSATSIDDARSRAARILESLEKSI--NSRASAESAQSFHKESVMLKEQMEALVRDNAILKRAVAIQYERQKENDERSQEVQQLKQMVAQYQERVRTLEVNNYALTLHLSQ--AQQSSSIPGRFHPDVF 269          
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: B9RV91_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0901070 PE=4 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.834e-33
Identity = 105/273 (38.46%), Postives = 151/273 (55.31%), Query Frame = -3
Query:  513 MSAGVCGKRVG---FEEIFGSSP--KRFRCSGYEXXXXXXXXXXXXXXXXST-FSALDPELRTSVVDTNEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQ---NFYDRN--AVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRV---VANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289
            MSA VCG +     F+E F S+P  KR RCS    P+    P   P   + + F  LDP+L    ++      E  N L S ++  N+Q         +C  E A    + D   ++ +     N        V+  EW DL V EM SA ++DDAK+RA+R+LEA E+ +    A++ A   + E   LKE + +L+ +N IL+RAVAIQHER  E E K RE+Q LK  ++QY EQ ++LE+NNYTL +HL++  A+QSS I G+F PD++
Sbjct:    1 MSAIVCGSKRSHYYFDEEFPSTPVSKRHRCSSSSPPHVRFSPPPSPFLHLKSLFPLLDPQLLEKALE------ECGNDLESAIKSLNEQ--------NSCFVEEAAPKPVQDALPDEGDATASGNVAPPTNLPVDGAEWVDLLVREMMSATSVDDAKSRASRVLEALEKSIHMHAADETAQSFEKESVMLKEQIEALIRDNTILKRAVAIQHERQKEFEEKNRELQQLKQLVSQYQEQLKSLEVNNYTLMMHLRQ--AEQSSPIPGRFHPDVF 257          
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: A9PBC1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12730g PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.416e-33
Identity = 106/298 (35.57%), Postives = 152/298 (51.01%), Query Frame = -3
Query:  513 MSAGVCGKRVGFEEIFGSSP---KRFRCSGYEXXXXXXXXXXXXXXXXSTF----------------SALDPELRTSVVDTNEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQNFYDRNAVNSP---------------EWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQI-----EHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289
            MSA VCGKR  FEE+  +SP   KR RCS       S    +       +F                +A+ P++   +++  +  +E  + L S +   N       +R G+  + +A   +    +  +V  Q      A   P               EW +LFV EM SA NIDDA+ARA+R LE  E+ + A  RA  E +     EH  LKE +++L+  N IL+RAV+IQHER  E E + +E+Q LK  ++QY +Q RTLE+NNY L LHL++  AQQSSSI G+F PD++
Sbjct:    1 MSAIVCGKRSFFEELTVTSPPVSKRIRCSSSSPVRFSPPRSNTLASNPPSFNFGSSSSSSSTLIEQLAAIFPDMDKQLIE--KVLEECGDDLDSAIRSLND------LRLGSAENFSAAADKSDVIDESNVPAQGVATTGAEAPPTEDLSASAHLSLDGAEWVELFVREMMSASNIDDARARASRALEVLEKSICA--RAGAEAVKNFHQEHMILKEQVQALIQENTILKRAVSIQHERQKEYEERNQEMQQLKQLVSQYQDQLRTLEVNNYALTLHLKQ--AQQSSSIPGRFHPDVF 286          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7TC54_VITVI1.766e-3438.36Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A067G1J7_CITSI7.274e-3437.01Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A022PZ98_ERYGU8.247e-3439.86Uncharacterized protein OS=Erythranthe guttata GN=... [more]
B9RV91_RICCO1.834e-3338.46Putative uncharacterized protein OS=Ricinus commun... [more]
A9PBC1_POPTR5.416e-3335.57Uncharacterized protein OS=Populus trichocarpa GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 204..231
NoneNo IPR availableCOILSCoilCoilcoord: 166..186
NoneNo IPR availablePANTHERPTHR31245:SF6SUBFAMILY NOT NAMEDcoord: 1..259
NoneNo IPR availablePANTHERPTHR31245FAMILY NOT NAMEDcoord: 1..259

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0015579 ID=g.arboreum_cottongen_reftransV1_0015579; Name=g.arboreum_cottongen_reftransV1_0015579; organism=Gossypium arboreum; type=contig; length=1585bp
GGAACTTATCCTTGCAATCCTTTTATGTGAACGAATGTTCAGTTGACAAA
AACAAAAAAGGAAACCCACACCTACAATGATACATCACTCGCCTTCCCAA
AATCAATTTTGACATCAAATGCCACGATCTACACCAAGGTATTACTATTA
TCAGCTTCAATCGAGCATCATAAATTTATCCCAAAAAGATCTCCTAAATT
GAAGATGATCCCGATATTAATCTGTACTCGAACTCTAATATGAAAACAAG
TTGACCCAGTCAAGAAAATGCAGTTAGCCATCCATCGCTTCTCTAAAAGG
AAACAAGAAAACTCGATCACCCCTTCAATGTCAACACTTGCGAGAGATTC
AAACTTGCAATTGTGTACATACTGATATTTTGGCTTGAATTATACAAACT
ACACACATCAGAATAACTGTGTATAAATCTTCATATCCCATGTTGGTTTA
CATAAACCATAAAATAGTAGAATATTAGCTATTAACTAATAATAACACGA
CGAAAGCTTTTAGTATATATCCGGAGGAAATTGCCCCTTAATTGAGCTAC
TTTGTTGTGCTTGTGCCCTTTGAAGATGTAGCCTTAATGTGTAGTTGTTC
AACTCTAAAGTTCGAGCTTGTTCGATGTACTGGTTGAGAGTGAGCTTCAA
GTGTTGCACTTCTCTTTCCTTCCCCTCTTGCTCGATGTTGCGTTCATGCT
GAATGGCAACAGCTCTCCTCAGAATTTGATTGTTATCTAACAAGCTCCGC
AAATGTTCCTTCAAGGAAGCATGCTCAATCTGCTCTTCGGCAGCCCTTTT
ATTGGCGACAACACGCCTCTCAAAGGCTTCTAAAATCCTAGCAGCACGTG
CCTTAGCATCGTCTATATTCATTGCACTCGTCATCTCGTGCACGAACAAG
TCAGTCCACTCAGGACTGTTGACTGCATTTCTATCATAAAAATTCTGTTT
ATTTACATCTTCGACATTGTAGTCCGAGATTTGACTACATGTAGCAGTCT
CATCAGTACAATTTCCAGTTCTCACACAATCAAAGCCATATTGTTTATTT
CTTTCTTCGAGATCAGAAGAAAGTGCATTCGAACTCTCCTTAAAATCTTC
ATTCGTATCGACAACAGATGTTCTTAACTCAGGATCCAAAGCAGAGAAAG
TTGAAACCCGGTCATCGGGTCTGGACCCAGGATCCGACGATGAGTTGGGA
GATTCGTAACCAGAACACCTGAATCTCTTGGGAGAGGATCCGAATATTTC
TTCAAAGCCCACCCTTTTCCCACAAACCCCTGCAGACATGGTTTCTTTTA
AAACCCTGTAAGGGGTTTAAAATTTTATCCTCAAATAAGCCAATTAATTT
TAATTAGGGGGAAAAAAGAACTTGGATCTGAAAACTATAAGCCTTGTTCT
ATACTGGGTTCAACGTTTTCATTTAATTTGGTACAAAATCTAATTTATCA
GATACATTTAGAGTTGTTGGGGAGACATGGAACCCTAGGAGTTTGATTGA
GGGAAGGGGAAAAGAAAGTGCGGGTGGGTCTGTTTATGCTTTGATTTTAA
TCTTCGTACAAAGTCTAATGTATCTCAAATCTCGA
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