g.arboreum_cottongen_reftransV1_0015579, g.arboreum_cottongen_reftransV1_0015579 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: A5C5J6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023939 PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 7.539e-51 Identity = 112/203 (55.17%), Postives = 138/203 (67.98%), Query Frame = -3 Query: 513 EDFKESSNALS-SDLEERNKQYGFDCVRTGNCTDETATC----SQISDYNVEDVN--KQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1100 ED ES +ALS D RN+ G D GN A Q ++ VEDV K F NA++ +W DLFVHEM +A ++ DA+ARAARILEAFE+ VV++ +E +EHASLKEHL++LL +NQIL+RAVAIQH+RN+EQE + REVQ LK + QY EQ R LELNNYTL+LHLQR AQ SSSI GQF PDI+ Sbjct: 14 EDAIESLHALSLGDTIARNESQGLDSAMMGNNDTAPAQSEHEYGQTTEQKVEDVQDLKSMFEFGNAMDGSKWVDLFVHEMMNATDLSDARARAARILEAFEKNVVSHSMELKE-LEHASLKEHLQNLLRDNQILKRAVAIQHDRNLEQEERAREVQQLKDVIRQYQEQVRALELNNYTLKLHLQR--AQGSSSIPGQFHPDIF 213
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: A0A0A0L259_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G294930 PE=4 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 1.498e-50 Identity = 120/276 (43.48%), Postives = 158/276 (57.25%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFGSS--------PKRFRCSGYEXXXXXXXXXX---XXXXXXSTFSALDPELRTSVVDTNEDFKESSNALSSDLEERNKQYGFDCVRTGNCT----DETATCSQISDYNVEDVN--KQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSAGVCGKRVGFEEIFGSS KR R S + SP S + F + E V + +DF ++ + GNC+ + TATCSQ+S +E+ + N ++ +W D+FV EM A+++ DA+ RAARILEAFE V N R +EE ++HASLKEHL++L+++NQIL+RAVAIQHERN+EQE K REV LK L QY EQ ++LE+ NYTL LHLQR + S+ G F DI+ Sbjct: 1 MSAGVCGKRVGFEEIFGSSSSPTACSSAKRSRWSTFGSPTRSDFGSGPDDSASVLLQMFPGVGAE-----VPSFDDFSARGHSAT----------------IGNCSTVPDERTATCSQMSHEKIEEAKDVGSTVAEGNGMHGSKWVDMFVQEMAGAVDVGDARIRAARILEAFEHNVTVNSRESEE-LKHASLKEHLQNLVNDNQILKRAVAIQHERNLEQEEKTREVHQLKHVLCQYQEQIQSLEVRNYTLNLHLQR-----AQSVSGHFHQDIF 249
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: A0A067DXI9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023249mg PE=4 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.294e-48 Identity = 120/250 (48.00%), Postives = 159/250 (63.60%), Query Frame = -3 Query: 579 MSAGVCGKRVGFEEIFGSS----PKRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTN----EDFKESSNALS-SDLEERNKQYGFDCVRTGN---CTDETAT-CSQISDYNVEDVNKQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRL 1289 MSAGVCGKRVGFEEI GSS KR RCS + S + F +DPE+ SV+ + ED + LS S++ ER K G + GN E+AT CSQ+S+ V + NF N + +W DLFVHEM SA ++DDA+ RAARILE FER ++ N +A++E +EHASLKEHL+SLL++NQIL++AV+IQHER++EQE KE+EV+ LKL ++QY +QAR LE+ L L Sbjct: 1 MSAGVCGKRVGFEEICGSSSPTSAKRSRCSTF-GSLVRSGSDDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNISERIKSQGLEPTIIGNFSAVPGESATSCSQMSEEEVRSAHT-NFCGENITDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKE-LEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEVIFLILTL 247
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: A0A067DYN8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023249mg PE=4 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 1.520e-48 Identity = 118/243 (48.56%), Postives = 157/243 (64.61%), Query Frame = -3 Query: 600 MSAGVCGKRVGFEEIFGSS----PKRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTN----EDFKESSNALS-SDLEERNKQYGFDCVRTGN---CTDETAT-CSQISDYNVEDVNKQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLEL 1289 MSAGVCGKRVGFEEI GSS KR RCS + S + F +DPE+ SV+ + ED + LS S++ ER K G + GN E+AT CSQ+S+ V + NF N + +W DLFVHEM SA ++DDA+ RAARILE FER ++ N +A++E +EHASLKEHL+SLL++NQIL++AV+IQHER++EQE KE+EV+ LKL ++QY +QAR LE+ Sbjct: 1 MSAGVCGKRVGFEEICGSSSPTSAKRSRCSTF-GSLVRSGSDDPVSFLLQMFPDVDPEVVKSVLGEHDNKIEDAIDRLRVLSFSNISERIKSQGLEPTIIGNFSAVPGESATSCSQMSEEEVRSAHT-NFCGENITDGSKWVDLFVHEMMSAADLDDARGRAARILEVFERSIITNSKASKE-LEHASLKEHLQSLLNDNQILKKAVSIQHERHLEQEQKEKEVELLKLVISQYQDQARNLEM 240
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: M0U7Y2_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 6.188e-45 Identity = 119/281 (42.35%), Postives = 162/281 (57.65%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFGS------SPKRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTNE----DFKESSNAL-----SSDLEERNKQYGFDCVRTGNCTDETATCS----QISDYNVEDVNKQNFYD---RNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSAG+CGKR+G EEIFGS S KR RC+ Y + + F ++D E+ +V+++++ D +S +AL S +E G + V + + C Q S++ VE V++ N D R A N W D+FV EM SA + DD + RA +ILE FER VVA AA E E SLKE L+ LL +NQIL+RAV IQHERN + + K +EVQHLK + QY EQ R LE++NYTL++HLQ+ AQ +SSI G F PD++ Sbjct: 1 MSAGICGKRLGLEEIFGSPAPSPPSAKRSRCALY-------GSEDKLSVLLRMFPSMDREVVETVLNSHDHKIDDAIKSLHALCLGDGSVSIE------GVNLVLQSSDNALESKCLYRHLQASEHKVE-VSQNNSADSQPREAQNGSSWVDIFVQEMMSASDWDDVRGRAMKILEVFERNVVAQTTAAVEH-EINSLKEQLQGLLRDNQILKRAVTIQHERNSDHDEKVKEVQHLKNVIGQYQEQVRALEMSNYTLKIHLQK--AQGASSIPGHFHPDVF 264
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: M0T2I6_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 3.434e-40 Identity = 113/277 (40.79%), Postives = 156/277 (56.32%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFGS------SPKRFRCSGYEXXXXXX------XXXXXXXXXXSTFSALDPELRTSVVDTNE----DFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVE--DVNKQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSAG+CGKR+G EEIFGS S KR RC+ Y SP S + + F A+D ++ +V++T + D +S +AL + + +++ + E SQ S VE + + + A W D+FV EM +A ++ D + RA +ILEAFE VVA A E E LKE L L+ +NQIL+RAVAIQHERN E E K REVQHLK + QY EQ R LE++NYTL++HLQ+ AQ+++SI G F PD++ Sbjct: 1 MSAGICGKRLGLEEIFGSPLPPPPSAKRSRCARYGSPVRHSNSDFGLGSEDKLSILLRMFPAMDRKVVETVLNTQDHKIDDAIKSLHALCLGDGSLSTEGVISDLQSNDSVLEGVMNSQTSGKKVEVSENDGADLQSGEAGKGTSWVDIFVKEMMNASDLGDVRGRAMKILEAFEGDVVAQTTAVVEN-ESNLLKEQLHCLVRDNQILKRAVAIQHERNSENEEKIREVQHLKHAICQYQEQVRALEMHNYTLKIHLQK--AQEANSIPGCFHPDMF 274
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: D7M7U0_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_349548 PE=4 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 2.815e-38 Identity = 106/268 (39.55%), Postives = 157/268 (58.58%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFGSSP----KRFRCSGYEXXXXXXXXXXXXXXXXST----FSALDPE-LRTSVVDTNEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MS VCGKRVG+++ FGSS KR + S + SP SS+ GS DD ++ F ++DPE +R + + N F+E+ +LSS L + D RT + + + S + D + ++ +W D V EM A+N+DD + R A ILEA E + N A+ ++E+ASLKE L+SL+++NQIL+R +A QH+R+ E E K ++VQHLK + QY +Q LEL+NY ++LHLQR+Q QQ +S PPD+Y Sbjct: 1 MSTRVCGKRVGYDDFFGSSSSPTNKRSKWSSFGSPIRSSEVGSGSDDPFASLIHMFPSMDPEFVREVLSNKNYVFEEAKESLSSIL------FNGDSDRTEAGSFDGSVGS--------------WKDEDMIDGAKWVDRLVSEMAKAINVDDMRRRVAVILEALEIIIKKNTNASN-KLEYASLKESLQSLINDNQILKRVIANQHQRSSENEEKAKQVQHLKGVVGQYQDQVHKLELSNYAMKLHLQRSQQQQQTSFSENLPPDVY 247
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: A0A022Q7G3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a009334mg PE=4 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 9.895e-38 Identity = 106/276 (38.41%), Postives = 149/276 (53.99%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFGSSP----------KRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVVDTNEDFKESSNALSSDLEERNK-QYGFDCVRTGNCTDETATCSQISDYNVEDV---NKQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVV--ANKRAAEE-QIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSA +CGKR FEE +P K+ RCS SP + V AL P++ +++ + ++S N L+S + N+ Q G+ +G +E + + D + ++ N EW DL V EM SA +IDDA++RAAR+LE+ E+ + A+ R AE EHA LKE + +LL NN IL+RAVAIQHER E + +EVQ LK + QY EQ RTLE+NNY L LHL R Q +SS+ G+F PD++ Sbjct: 1 MSAILCGKRSFFEEAESGAPSPTSASPPVYKKLRCSSSNSPVRFTYSPPAYSGPVDQLKALFPDMEIQLLE--KALEDSGNDLNSAINSLNELQLGYLKSNSGLAAEENPDMEKETAPGFVDAVPSEEPQIQNKMPTNGAEWVDLVVKEMMSATSIDDARSRAARVLESLEKSITSQASARLAEGFHKEHAMLKEQIEALLGNNAILKRAVAIQHERQKEYDESNQEVQQLKQLVAQYQEQLRTLEMNNYALTLHL-RQAQQSNSSVIGRFNPDVF 273
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: D5AE30_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.018e-37 Identity = 107/272 (39.34%), Postives = 155/272 (56.99%), Query Frame = -3 Query: 513 MSAGVCGKRVG-FEEIFGSSP---KRFRCSGYEXXXXXXXXXXXXXXXXSTFSALDPELRTSVV---DTNED--FKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQNFYDRNA--VNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQI--EHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MSA VCGKR+ FE++ GS P KR R + S P ++ F A+DP+L SV D N D K SN + E+ V + + +Q +D + ++ ++ + EW + V EM +A ++DDA++RA+RILEAFE+ V++ A E + E+ SLKE +++LL N IL+RAVAIQHER +EQE K +EVQ L+ + QY EQ RTLELNNY L+LHL++ A++ SS+ G+F PDI+ Sbjct: 1 MSAAVCGKRLPPFEDVHGSPPIVAKRLRYTS------SLSPSDNLSRLIALFPAMDPQLVESVFESCDENMDHAIKSLSNLCLNPFEKNIFTADDGLVHSDAQPVQVPGSTQSTDADSSNLEFAQLDGKSGCPADGVEWVEFLVIEMKNASDLDDARSRASRILEAFEKTVMSRSGAMAEVLYKENTSLKEQVQNLLHENNILKRAVAIQHERQLEQEEKSKEVQQLRQLVTQYQEQVRTLELNNYALKLHLRK--AEEGSSMPGRFHPDIF 264
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Match: R0FCD0_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10001811mg PE=4 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 4.854e-37 Identity = 109/268 (40.67%), Postives = 158/268 (58.96%), Query Frame = -3 Query: 513 MSAGVCGKRVGFEEIFGSSP----KRFRCSGYEXXXXXXXXXXXXXXXXST----FSALDPE-LRTSVVDTNEDFKESSNALSSDLEERNKQYGFDCVRTGNCTDETATCSQISDYNVEDVNKQNFYDRNAVNSPEWTDLFVHEMTSAMNIDDAKARAARILEAFERRVVANKRAAEEQIEHASLKEHLRSLLDNNQILRRAVAIQHERNIEQEGKEREVQHLKLTLNQYIEQARTLELNNYTLRLHLQRXXXXXXXSIKGQFPPDIY 1289 MS GVCGKRV +++ FGSS KR + S + SP SS+ GS DD V++ F +DPE +R + + N F+E+ +LSS + + D RT + + + S + D++ ++ +W + EM+ A NIDD + R IL+A ER + N A++E +E+ASLKE L+SL+++NQIL+R +A QH+R+ E E K +EVQHLK + QY EQ LEL+NY L+LHLQR+Q QQ S G PPD+Y Sbjct: 1 MSTGVCGKRVEYDDYFGSSSSPTNKRSKWSRFGSPIRSSETGSGSDDPVASLIHMFPTMDPEFVREVLSNKNNVFEEAKESLSSII------FNGDLRRTEAGSSDGSVGS--------------WRDKDMIDRAKWVERLALEMSKAENIDDMRRRVVVILDALERVIKHNTNASKE-LEYASLKETLQSLINDNQILKRVIASQHQRSSENEEKAKEVQHLKGVVGQYQEQVHKLELSNYALKLHLQRSQQQQQSFFSGNSPPDVY 247 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0015579 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0015579 ID=g.arboreum_cottongen_reftransV1_0015579; Name=g.arboreum_cottongen_reftransV1_0015579; organism=Gossypium arboreum; type=contig; length=1585bpback to top |