g.arboreum_cottongen_reftransV1_0016674, g.arboreum_cottongen_reftransV1_0016674 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A0D2UMC3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G148000 PE=4 SV=1) HSP 1 Score: 383.259 bits (983), Expect = 3.478e-127 Identity = 201/205 (98.05%), Postives = 203/205 (99.02%), Query Frame = -1 Query: 3 RKLASHCXXXXXXXXXXXXXXXKGNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 617 RKLASHCKSKLWKQMKMGKKAKKGNSGFDDNGYKKN TSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANI PAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIE+TLKMICKVIVVNPLDL+CNCYGSHV Sbjct: 38 RKLASHCKSKLWKQMKMGKKAKKGNSGFDDNGYKKNATSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIIPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEETLKMICKVIVVNPLDLMCNCYGSHV 242
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A0D2TK62_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G148000 PE=4 SV=1) HSP 1 Score: 383.645 bits (984), Expect = 1.030e-126 Identity = 201/205 (98.05%), Postives = 203/205 (99.02%), Query Frame = -1 Query: 3 RKLASHCXXXXXXXXXXXXXXXKGNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 617 RKLASHCKSKLWKQMKMGKKAKKGNSGFDDNGYKKN TSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANI PAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIE+TLKMICKVIVVNPLDL+CNCYGSHV Sbjct: 38 RKLASHCKSKLWKQMKMGKKAKKGNSGFDDNGYKKNATSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIIPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEETLKMICKVIVVNPLDLMCNCYGSHV 242
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A0D2TQC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G148000 PE=4 SV=1) HSP 1 Score: 385.571 bits (989), Expect = 4.872e-126 Identity = 201/205 (98.05%), Postives = 203/205 (99.02%), Query Frame = -1 Query: 3 RKLASHCXXXXXXXXXXXXXXXKGNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 617 RKLASHCKSKLWKQMKMGKKAKKGNSGFDDNGYKKN TSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANI PAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIE+TLKMICKVIVVNPLDL+CNCYGSHV Sbjct: 38 RKLASHCKSKLWKQMKMGKKAKKGNSGFDDNGYKKNATSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIIPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEETLKMICKVIVVNPLDLMCNCYGSHV 242
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A0D2QGG7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G148000 PE=4 SV=1) HSP 1 Score: 385.185 bits (988), Expect = 5.972e-126 Identity = 201/205 (98.05%), Postives = 203/205 (99.02%), Query Frame = -1 Query: 3 RKLASHCXXXXXXXXXXXXXXXKGNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 617 RKLASHCKSKLWKQMKMGKKAKKGNSGFDDNGYKKN TSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANI PAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIE+TLKMICKVIVVNPLDL+CNCYGSHV Sbjct: 38 RKLASHCKSKLWKQMKMGKKAKKGNSGFDDNGYKKNATSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIIPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEETLKMICKVIVVNPLDLMCNCYGSHV 242
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A0D2TK64_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G148000 PE=4 SV=1) HSP 1 Score: 379.022 bits (972), Expect = 4.572e-124 Identity = 178/182 (97.80%), Postives = 180/182 (98.90%), Query Frame = -1 Query: 3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548 GNSGFDDNGYKKN TSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANI PAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIE+TLKMICKVIVVNPLDL+CNCYGSHV Sbjct: 10 GNSGFDDNGYKKNATSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIIPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEETLKMICKVIVVNPLDLMCNCYGSHV 191
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A061GCT4_THECC (Pumilio 23, putative isoform 1 OS=Theobroma cacao GN=TCM_029253 PE=4 SV=1) HSP 1 Score: 322.783 bits (826), Expect = 2.316e-102 Identity = 151/178 (84.83%), Postives = 164/178 (92.13%), Query Frame = -1 Query: 3 FDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 536 FD +GY K V QVT+GTGKFKKS KH NSDSQ +IRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKE ELATDYIIS+TLQTLL+GC++D+LCSFL+GCAN+FPAIAMDRSGSHVAETA KSLARHVQDTE Y IIE+TLKMICKVIVVNP+DL+CNCYGSHV Sbjct: 12 FDGDGYNKKVAGQVTNGTGKFKKSSKHQSNSDSQTSLIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKELELATDYIISHTLQTLLEGCDVDHLCSFLKGCANVFPAIAMDRSGSHVAETALKSLARHVQDTEDYAIIEETLKMICKVIVVNPVDLMCNCYGSHV 189
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A067EF31_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003928mg PE=4 SV=1) HSP 1 Score: 266.929 bits (681), Expect = 1.614e-80 Identity = 122/179 (68.16%), Postives = 148/179 (82.68%), Query Frame = -1 Query: 3 GFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 539 GFD + KN + DG+ +KS+KH SD + V+RKQV+P+ AKYF+EI+NLFES VD+EERSV+C NALEE RGKE ELATDYIIS+TLQTLL+GC++D+LCSFLRGCA +FPAIAMDRSGSHVAETA KSLA H+QD A++IIE+TLK ICKVIV NP+D++CNCYGSHV Sbjct: 51 GFDADNSNKNSSGHGADGSASARKSWKHQNASDPKTSVVRKQVDPDLAKYFAEISNLFESNEVDLEERSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHV 229
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: V4SHF6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024928mg PE=4 SV=1) HSP 1 Score: 266.544 bits (680), Expect = 1.947e-80 Identity = 122/179 (68.16%), Postives = 148/179 (82.68%), Query Frame = -1 Query: 3 GFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 539 GFD + KN + DG+ +KS+KH SD + V+RKQV+P+ AKYF+EI+NLFES VD+EERSV+C NALEE RGKE ELATDYIIS+TLQTLL+GC++D+LCSFLRGCA +FPAIAMDRSGSHVAETA KSLA H+QD A++IIE+TLK ICKVIV NP+D++CNCYGSHV Sbjct: 51 GFDADNSNKNSSGHGADGSASARKSWKHQNASDPKTSVVRKQVDPDLAKYFAEISNLFESNEVDLEERSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHV 229
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: B9GY00_POPTR (Pumilio/Puf RNA-binding domain-containing family protein OS=Populus trichocarpa GN=POPTR_0003s07060g PE=4 SV=2) HSP 1 Score: 257.299 bits (656), Expect = 5.015e-77 Identity = 122/182 (67.03%), Postives = 145/182 (79.67%), Query Frame = -1 Query: 3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548 G+ GFD + K+V+ + TDGT K KKS K+ P I V+PET KYFSEI NLFES GVD+EER VICGNALEEARGKEFELATDY IS+TLQ LL+GCN+D+LC FL+GCA +FP I+MDRSGSHVAETA KSLA H+QD EAY++IE+TL ICKVIV +P+D++CNCYGSHV Sbjct: 49 GSFGFDADNSNKSVSGRATDGTAKPKKSSKYQNTFSEPQPSI---VDPETTKYFSEIVNLFESDGVDLEERPVICGNALEEARGKEFELATDYYISHTLQILLEGCNVDHLCDFLQGCAKVFPLISMDRSGSHVAETALKSLAMHLQDDEAYSVIEETLTNICKVIVASPVDMMCNCYGSHV 227
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A067KWN7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24625 PE=4 SV=1) HSP 1 Score: 255.758 bits (652), Expect = 1.091e-76 Identity = 123/178 (69.10%), Postives = 143/178 (80.34%), Query Frame = -1 Query: 3 FDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 536 FD + KNV+ GT + KKS KH + Q VIRKQV+PET KYFSEIANL ES GVD EERSVICGNALEEA+GKEFELATDYIIS+T QTLL+GC++++LC FL+ CANIFP IAMDRSGSHVAETA KSLA +QD EA++ IE+TL ICKVIV NP+D++CNCYGSHV Sbjct: 28 FDGDNSNKNVSG---PGTFRPKKSSKHQNTLEPQPLVIRKQVDPETVKYFSEIANLLESNGVDFEERSVICGNALEEAKGKEFELATDYIISHTFQTLLEGCDIEHLCGFLQSCANIFPLIAMDRSGSHVAETALKSLATQLQDNEAFSAIEETLTTICKVIVANPVDMMCNCYGSHV 202
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy Swiss-Prot
Match: PUM23_ARATH (Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 1.966e-73 Identity = 113/182 (62.09%), Postives = 143/182 (78.57%), Query Frame = -1 Query: 3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548 GN GFD + KKN + G K + K H + Q +RK+++PET+KYFSEIANLF+S V++EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSF+R A++FPAIAMDRSGSHVAE+A KSLA H+++ +AY++IE+ L ICKVIV NPLD++CNCYGSHV Sbjct: 47 GNRGFDVDSSKKNQSG----GAPNVKPASKKHSEFEHQNQFVRKEIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFIRNSASVFPAIAMDRSGSHVAESALKSLATHLENPDAYSVIEEALHSICKVIVDNPLDMMCNCYGSHV 224 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0016674 ID=g.arboreum_cottongen_reftransV1_0016674; Name=g.arboreum_cottongen_reftransV1_0016674; organism=Gossypium arboreum; type=contig; length=617bpback to top |