g.arboreum_cottongen_reftransV1_0016674, g.arboreum_cottongen_reftransV1_0016674 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A078C7X4_BRANA (BnaC06g33530D protein OS=Brassica napus GN=BnaC06g33530D PE=4 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 1.100e-67 Identity = 108/182 (59.34%), Postives = 142/182 (78.02%), Query Frame = -1 Query: 3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548 G GFD + K+N + + + K + K + Q +RK+++PET+KYFSEIANLF+S GVD+EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSFLR A++FPAIAMD+SGSHVAE+A KSLA H+++ +AY++IE+ L ICKVIV PL++ICNC+GS+V Sbjct: 101 GGRGFDRDSNKRNQS----NDSANVKAASKKQSEFEHQNQFVRKEIDPETSKYFSEIANLFDSNGVDLEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFLRNSASVFPAIAMDKSGSHVAESALKSLATHLENPDAYSVIEEALLSICKVIVEKPLEMICNCHGSYV 278
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: M4DHT8_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra016065 PE=4 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 3.649e-67 Identity = 109/183 (59.56%), Postives = 142/183 (77.60%), Query Frame = -1 Query: 3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFK-HHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548 G G D + K+N ++ + KK + HQN +RK+++PET+KYFSEIANLF+S GVD+EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSFLR A++FPAIAMD+SGSHVAE+A KSLA H+++ +AY++IE+ L ICKVIV PL++ICNC+GS+V Sbjct: 25 GGRGVDRDSNKRNQSNDAANVKSASKKQSEFEHQNQ-----FVRKEIDPETSKYFSEIANLFDSNGVDLEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFLRNSASVFPAIAMDKSGSHVAESALKSLATHLENPDAYSVIEEALLSICKVIVEKPLEMICNCHGSYV 202
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A078E5N6_BRANA (BnaA07g30080D protein OS=Brassica napus GN=BnaA07g30080D PE=4 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 5.261e-67 Identity = 109/183 (59.56%), Postives = 142/183 (77.60%), Query Frame = -1 Query: 3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFK-HHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548 G G D + K+N ++ + KK + HQN +RK+++PET+KYFSEIANLF+S GVD+EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSFLR A++FPAIAMD+SGSHVAE+A KSLA H+++ +AY++IE+ L ICKVIV PL++ICNC+GS+V Sbjct: 63 GGRGVDRDSNKRNQSNDAANVKSASKKQSEFEHQNQ-----FVRKEIDPETSKYFSEIANLFDSNGVDLEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFLRNSASVFPAIAMDKSGSHVAESALKSLATHLENPDAYSVIEEALLSICKVIVEKPLEMICNCHGSYV 240
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A068TNJ9_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_2 OS=Coffea canephora GN=GSCOC_T00021690001 PE=4 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 1.060e-66 Identity = 107/180 (59.44%), Postives = 140/180 (77.78%), Query Frame = -1 Query: 3 SGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 542 +G+D N + Q+ + TG F K +H + S A +RKQV+PET+KYF+EIAN+ E +D+EER+VICGNALEEARGKE +LATDYIIS+TLQTLL+GC++++LC FLR C + F IAMDRSGSHV ETA K+LA H+QDT+ ++IEDTL I ++IVVNP+D++CNCYGSHV Sbjct: 10 AGYDGNHSSQGFGGQM-NRTGTFSKPLQHDEASVPHASFVRKQVDPETSKYFTEIANVIEGSEIDLEERAVICGNALEEARGKEVQLATDYIISHTLQTLLEGCSVEHLCGFLRNCQSNFSLIAMDRSGSHVVETALKALAMHLQDTDNQSLIEDTLTTISRMIVVNPVDIMCNCYGSHV 188
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: M1AIQ2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009149 PE=4 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 3.672e-64 Identity = 101/145 (69.66%), Postives = 119/145 (82.07%), Query Frame = -1 Query: 3 QAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 437 Q +RKQ++PETAKYF+EIAN E +D EERSVICGNALEE RGKE ELATDYIIS+TLQTLL+GC+LD+LCSFL+ CA F IA DRSGSHV ETA KSL+ H+QD E +++IE LK ICK IVVNP+DL+CNC+GSHV Sbjct: 43 QTSFLRKQIDPETAKYFAEIANAIEGTEIDPEERSVICGNALEETRGKEAELATDYIISHTLQTLLEGCSLDHLCSFLQSCAKNFSHIAADRSGSHVVETALKSLSFHLQDNENHSLIEHALKKICKAIVVNPVDLMCNCHGSHV 187
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy Swiss-Prot
Match: PUM23_ARATH (Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 1.966e-73 Identity = 113/182 (62.09%), Postives = 143/182 (78.57%), Query Frame = -1 Query: 3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548 GN GFD + KKN + G K + K H + Q +RK+++PET+KYFSEIANLF+S V++EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSF+R A++FPAIAMDRSGSHVAE+A KSLA H+++ +AY++IE+ L ICKVIV NPLD++CNCYGSHV Sbjct: 47 GNRGFDVDSSKKNQSG----GAPNVKPASKKHSEFEHQNQFVRKEIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFIRNSASVFPAIAMDRSGSHVAESALKSLATHLENPDAYSVIEEALHSICKVIVDNPLDMMCNCYGSHV 224 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0016674 ID=g.arboreum_cottongen_reftransV1_0016674; Name=g.arboreum_cottongen_reftransV1_0016674; organism=Gossypium arboreum; type=contig; length=617bpback to top |