g.arboreum_cottongen_reftransV1_0016674, g.arboreum_cottongen_reftransV1_0016674 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0016674
Unique Nameg.arboreum_cottongen_reftransV1_0016674
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length617
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0016674:1..617 .
Chr10:15437580..15438865 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A078C7X4_BRANA (BnaC06g33530D protein OS=Brassica napus GN=BnaC06g33530D PE=4 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.100e-67
Identity = 108/182 (59.34%), Postives = 142/182 (78.02%), Query Frame = -1
Query:    3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548
            G  GFD +  K+N +    + +   K + K     + Q   +RK+++PET+KYFSEIANLF+S GVD+EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSFLR  A++FPAIAMD+SGSHVAE+A KSLA H+++ +AY++IE+ L  ICKVIV  PL++ICNC+GS+V
Sbjct:  101 GGRGFDRDSNKRNQS----NDSANVKAASKKQSEFEHQNQFVRKEIDPETSKYFSEIANLFDSNGVDLEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFLRNSASVFPAIAMDKSGSHVAESALKSLATHLENPDAYSVIEEALLSICKVIVEKPLEMICNCHGSYV 278          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: M4DHT8_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra016065 PE=4 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 3.649e-67
Identity = 109/183 (59.56%), Postives = 142/183 (77.60%), Query Frame = -1
Query:    3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFK-HHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548
            G  G D +  K+N ++   +     KK  +  HQN       +RK+++PET+KYFSEIANLF+S GVD+EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSFLR  A++FPAIAMD+SGSHVAE+A KSLA H+++ +AY++IE+ L  ICKVIV  PL++ICNC+GS+V
Sbjct:   25 GGRGVDRDSNKRNQSNDAANVKSASKKQSEFEHQNQ-----FVRKEIDPETSKYFSEIANLFDSNGVDLEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFLRNSASVFPAIAMDKSGSHVAESALKSLATHLENPDAYSVIEEALLSICKVIVEKPLEMICNCHGSYV 202          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A078E5N6_BRANA (BnaA07g30080D protein OS=Brassica napus GN=BnaA07g30080D PE=4 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.261e-67
Identity = 109/183 (59.56%), Postives = 142/183 (77.60%), Query Frame = -1
Query:    3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFK-HHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548
            G  G D +  K+N ++   +     KK  +  HQN       +RK+++PET+KYFSEIANLF+S GVD+EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSFLR  A++FPAIAMD+SGSHVAE+A KSLA H+++ +AY++IE+ L  ICKVIV  PL++ICNC+GS+V
Sbjct:   63 GGRGVDRDSNKRNQSNDAANVKSASKKQSEFEHQNQ-----FVRKEIDPETSKYFSEIANLFDSNGVDLEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFLRNSASVFPAIAMDKSGSHVAESALKSLATHLENPDAYSVIEEALLSICKVIVEKPLEMICNCHGSYV 240          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A068TNJ9_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_2 OS=Coffea canephora GN=GSCOC_T00021690001 PE=4 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.060e-66
Identity = 107/180 (59.44%), Postives = 140/180 (77.78%), Query Frame = -1
Query:    3 SGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 542
            +G+D N   +    Q+ + TG F K  +H + S   A  +RKQV+PET+KYF+EIAN+ E   +D+EER+VICGNALEEARGKE +LATDYIIS+TLQTLL+GC++++LC FLR C + F  IAMDRSGSHV ETA K+LA H+QDT+  ++IEDTL  I ++IVVNP+D++CNCYGSHV
Sbjct:   10 AGYDGNHSSQGFGGQM-NRTGTFSKPLQHDEASVPHASFVRKQVDPETSKYFTEIANVIEGSEIDLEERAVICGNALEEARGKEVQLATDYIISHTLQTLLEGCSVEHLCGFLRNCQSNFSLIAMDRSGSHVVETALKALAMHLQDTDNQSLIEDTLTTISRMIVVNPVDIMCNCYGSHV 188          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: M1AIQ2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009149 PE=4 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 3.672e-64
Identity = 101/145 (69.66%), Postives = 119/145 (82.07%), Query Frame = -1
Query:    3 QAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 437
            Q   +RKQ++PETAKYF+EIAN  E   +D EERSVICGNALEE RGKE ELATDYIIS+TLQTLL+GC+LD+LCSFL+ CA  F  IA DRSGSHV ETA KSL+ H+QD E +++IE  LK ICK IVVNP+DL+CNC+GSHV
Sbjct:   43 QTSFLRKQIDPETAKYFAEIANAIEGTEIDPEERSVICGNALEETRGKEAELATDYIISHTLQTLLEGCSLDHLCSFLQSCAKNFSHIAADRSGSHVVETALKSLSFHLQDNENHSLIEHALKKICKAIVVNPVDLMCNCHGSHV 187          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy Swiss-Prot
Match: PUM23_ARATH (Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.966e-73
Identity = 113/182 (62.09%), Postives = 143/182 (78.57%), Query Frame = -1
Query:    3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548
            GN GFD +  KKN +     G    K + K H   + Q   +RK+++PET+KYFSEIANLF+S  V++EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSF+R  A++FPAIAMDRSGSHVAE+A KSLA H+++ +AY++IE+ L  ICKVIV NPLD++CNCYGSHV
Sbjct:   47 GNRGFDVDSSKKNQSG----GAPNVKPASKKHSEFEHQNQFVRKEIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFIRNSASVFPAIAMDRSGSHVAESALKSLATHLENPDAYSVIEEALHSICKVIVDNPLDMMCNCYGSHV 224          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A078C7X4_BRANA1.100e-6759.34BnaC06g33530D protein OS=Brassica napus GN=BnaC06g... [more]
M4DHT8_BRARP3.649e-6759.56Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
A0A078E5N6_BRANA5.261e-6759.56BnaA07g30080D protein OS=Brassica napus GN=BnaA07g... [more]
A0A068TNJ9_COFCA1.060e-6659.44Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
M1AIQ2_SOLTU3.672e-6469.66Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PUM23_ARATH1.966e-7362.09Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 50..191
e-value: 3.6E-27
score: 94.6
NoneNo IPR availablePANTHERPTHR13102:SF0NUCLEOLAR PROTEIN 9coord: 15..191
NoneNo IPR availablePANTHERPTHR13102PROTEIN C14ORF21coord: 15..191
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 75..191

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0016674 ID=g.arboreum_cottongen_reftransV1_0016674; Name=g.arboreum_cottongen_reftransV1_0016674; organism=Gossypium arboreum; type=contig; length=617bp
AGAACGTGAGATCCATAGCAATTGCATATTAAATCAAGGGGATTGACAAC
AATAACCTTGCATATCATTTTCAGAGTATCTTCAATAATGGTGTAGGCTT
CTGTGTCCTGAACATGCCTGGCTAATGACTTAAAAGCTGTCTCAGCTACA
TGAGAACCAGACCTGTCCATTGCAATAGCAGGAAAGATATTTGCACAGCC
TCGAAGGAAACTGCATAGATTGTCCAAATTACAGCCGTCGAGTAGAGTCT
GAAGAGTATTGCTTATGATATAATCTGTTGCTAATTCAAATTCCTTCCCC
CTAGCTTCTTCAAGAGCATTACCACATATAACTGATCGCTCCTCCACATC
CACTCCTTGGCTTTCAAAAAGGTTTGCAATCTCCGAAAAGTACTTTGCTG
TTTCAGGCTCAACCTGTTTCCTGATAACCGGTGCTTGTGAGTCCGAATTC
TGGTGATGCTTGAAAGATTTCTTAAATTTCCCAGTCCCATCAGTCACCTG
GCTCGTTACATTCTTTTTATAACCATTATCATCAAAACCACTATTTCCTT
TCTTTGCTTTTTTCCCCATTTTCATTTGCTTCCAAAGCTTCGACTTACAG
TGAGAGGCTAATTTTCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding