g.arboreum_cottongen_reftransV1_0016674, g.arboreum_cottongen_reftransV1_0016674 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: D7TZJ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g00300 PE=4 SV=1) HSP 1 Score: 248.825 bits (634), Expect = 6.386e-74 Identity = 117/182 (64.29%), Postives = 144/182 (79.12%), Query Frame = -1 Query: 3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548 G F+ + +K ++ DGT K +K FKH S+ + +RKQV+PE AKYFSEIAN+ E VD+EERSVICGNALEEARGKE ELATDYIIS+TLQ LL+GC++D+LC FL+ CA FP IAMDRSGSHVAETA KSL+ H+QD E+YT++E+TL ICKVIVVNP+D++CNCYGSHV Sbjct: 22 GYREFEGDHRQKGLSGWGPDGTVKPEKPFKHKNTSEPKTYRLRKQVDPEMAKYFSEIANVIEGNEVDLEERSVICGNALEEARGKELELATDYIISHTLQALLEGCDVDHLCRFLQSCAKDFPYIAMDRSGSHVAETALKSLSLHLQDKESYTLVEETLATICKVIVVNPVDVMCNCYGSHV 203
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: W9R1Z5_9ROSA (Pumilio-23-like protein OS=Morus notabilis GN=L484_017989 PE=4 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 2.745e-72 Identity = 115/178 (64.61%), Postives = 141/178 (79.21%), Query Frame = -1 Query: 3 FDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 536 FDD KK V+ + DG+ K + KH N V+RKQV+PET KYFSEIANLFES GVD+EER+VICGNALEE RG EF+LATDYIIS+TLQ LL+GC++D+LC FLR CA FP IA D+SGSHVAETA +SLA H+QD++ Y+++EDTL MICKV+V N +D++CNCYGSHV Sbjct: 18 FDDTS-KKKVSGKAADGSFKTENFAKHRMNYAPHQSVVRKQVDPETTKYFSEIANLFESNGVDLEERAVICGNALEETRGNEFQLATDYIISHTLQMLLEGCDIDHLCDFLRSCAKDFPFIATDQSGSHVAETAIRSLAMHLQDSDVYSVVEDTLTMICKVVVENSVDVMCNCYGSHV 194
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A5C2P5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027501 PE=4 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 3.529e-72 Identity = 117/182 (64.29%), Postives = 145/182 (79.67%), Query Frame = -1 Query: 3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548 G+ F+ + +K ++ DGT K +K FKH S+ + +RKQV+PE AKYFSEIAN+ E VD+EERSVICGNALEEARGKE ELATDYIIS+TLQ LL+GC++D+LC FL+ CA FP IAMDRSGSHVAETA KSL+ H+QD E+YT++E+TL ICKVIVVNP+D++CNCYGSHV Sbjct: 22 GHREFEGDHRQKGLSGWGPDGTVKPEKPFKHKNTSEPKTYRLRKQVDPEMAKYFSEIANVIEGNEVDLEERSVICGNALEEARGKELELATDYIISHTLQALLEGCDVDHLCRFLQSCAKDFPYIAMDRSGSHVAETALKSLSLHLQDKESYTLVEETLATICKVIVVNPVDVMCNCYGSHV 203
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: V4KA41_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018182mg PE=4 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 6.885e-72 Identity = 113/182 (62.09%), Postives = 142/182 (78.02%), Query Frame = -1 Query: 3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548 G+ GFD + K+N +S G K + K + Q +RK+++PET+KYFSEIANLF+S VD+EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSFLR A +FPAIAMDRSGSHVAE+A KSLA H+++ +AY++IE+ L ICKVIV NPLD++CNCYGSHV Sbjct: 47 GSRGFDGDSNKRNQSS----GAANVKAAPKKQSEFEHQNQFVRKEIDPETSKYFSEIANLFDSNEVDIEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCQLDQLCSFLRNSATVFPAIAMDRSGSHVAESALKSLASHLENPDAYSVIEEALTSICKVIVDNPLDMMCNCYGSHV 224
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: M5X3T3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001862mg PE=4 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 7.663e-72 Identity = 111/153 (72.55%), Postives = 134/153 (87.58%), Query Frame = -1 Query: 3 HQNSDS--QAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 455 H+ SDS Q V+RKQV+PET KYFSEIANL ES GVD+EERSV+CGNALEEARGKEFELATDY +S+T+QTLL+GC++++LCSFLR CA FP+IAMDRSGSHVAETA KSL++H+QD + Y+++EDTL ICKVIV NP DL+C+CYGSHV Sbjct: 59 HRQSDSETQRSVVRKQVDPETTKYFSEIANLIESNGVDMEERSVVCGNALEEARGKEFELATDYYLSHTMQTLLEGCDVNSLCSFLRSCAKDFPSIAMDRSGSHVAETAIKSLSQHLQDNDVYSVVEDTLNAICKVIVKNPGDLMCDCYGSHV 211
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: B9T6F0_RICCO (Protein C14orf21, putative OS=Ricinus communis GN=RCOM_0333710 PE=4 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 4.961e-70 Identity = 108/140 (77.14%), Postives = 126/140 (90.00%), Query Frame = -1 Query: 3 RKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 422 RKQV+PET +YFSEIANLFES G+D+EER+VICGNALEEARGKE+ELATDYIIS+TLQ LL+GC++D+LCSFLR CA FP IAMDRSGSHVAETA KSLA H+QD EAY+IIE+TL +I KVIV NP+D++CN YGSHV Sbjct: 6 RKQVDPETKQYFSEIANLFESSGIDLEERAVICGNALEEARGKEYELATDYIISHTLQNLLEGCDVDHLCSFLRSCAEFFPLIAMDRSGSHVAETALKSLATHLQDNEAYSIIEETLTVISKVIVANPVDMMCNRYGSHV 145
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: D7KZC3_ARALL (APUM23 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_476360 PE=4 SV=1) HSP 1 Score: 236.113 bits (601), Expect = 3.158e-69 Identity = 110/182 (60.44%), Postives = 140/182 (76.92%), Query Frame = -1 Query: 3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548 G GFD + K+N + G K + K + Q +RK+++PET+KYFSEIANLF+S V++EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSF+R A +FPAIAMDRSGSHVAE+A KSLA H+++ +AY++IE+ L ICKVIV NPLD++CNCYGSHV Sbjct: 47 GGRGFDGDSNKRNQSG----GAPNVKPASKKQSEFEHQNQFVRKEIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFIRNSATVFPAIAMDRSGSHVAESALKSLATHLENPDAYSVIEEALNSICKVIVDNPLDMMCNCYGSHV 224
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: R0I6I9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10019867mg PE=4 SV=1) HSP 1 Score: 234.958 bits (598), Expect = 6.320e-69 Identity = 109/182 (59.89%), Postives = 140/182 (76.92%), Query Frame = -1 Query: 3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548 G+ GFD + K+N + G K K + Q +RK+++PET+KYFSEIANLF+S V++EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSF+R A +FPAIAMDRSGSHVAE+A K+LA H+++ +AY++IE+ L ICKVIV NPLD++CNCYGSHV Sbjct: 25 GSRGFDGDSNKRNQSG----GAPSVKPVSKKQSEFEHQNQFVRKEIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFIRNSATVFPAIAMDRSGSHVAESALKALATHLENPDAYSVIEEALNSICKVIVDNPLDMLCNCYGSHV 202
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A0A0KCB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447980 PE=4 SV=1) HSP 1 Score: 234.958 bits (598), Expect = 8.867e-69 Identity = 114/183 (62.30%), Postives = 141/183 (77.05%), Query Frame = -1 Query: 3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDS-QAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548 G GFD+N +N + TD + K F +++ + Q+ IRKQV+PET KYF EI+NLF S VD EERSVICGNALEEA GKEFELATDYIIS+T+Q+LL+GCN+++LC+FL CAN FP IAMDRSGSHVAETA KSLA H+QD + Y+++EDTL ICK IV N LD++CNC+GSHV Sbjct: 48 GGHGFDENKTHRNASG--TDSGMRSNKKFTDSKSTSAPQSSFIRKQVDPETTKYFMEISNLFGSDNVDFEERSVICGNALEEAVGKEFELATDYIISHTMQSLLEGCNVEDLCNFLHSCANQFPFIAMDRSGSHVAETAIKSLAMHLQDEDVYSLVEDTLTAICKEIVANSLDVMCNCHGSHV 228
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A0D3D035_BRAOL (Uncharacterized protein (Fragment) OS=Brassica oleracea var. oleracea GN=APUM23 PE=4 SV=1) HSP 1 Score: 233.032 bits (593), Expect = 7.130e-68 Identity = 108/182 (59.34%), Postives = 142/182 (78.02%), Query Frame = -1 Query: 3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548 G GFD + K+N + + + K + K + Q +RK+++PET+KYFSEIANLF+S GVD+EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSFLR A++FPAIAMD+SGSHVAE+A KSLA H+++ +AY++IE+ L ICKVIV PL++ICNC+GS+V Sbjct: 98 GGRGFDRDSNKRNQS----NDSANVKAASKKQSEFEHQNQFVRKEIDPETSKYFSEIANLFDSNGVDLEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFLRNSASVFPAIAMDKSGSHVAESALKSLATHLENPDAYSVIEEALLSICKVIVEKPLEMICNCHGSYV 275
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy Swiss-Prot
Match: PUM23_ARATH (Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 1.966e-73 Identity = 113/182 (62.09%), Postives = 143/182 (78.57%), Query Frame = -1 Query: 3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548 GN GFD + KKN + G K + K H + Q +RK+++PET+KYFSEIANLF+S V++EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSF+R A++FPAIAMDRSGSHVAE+A KSLA H+++ +AY++IE+ L ICKVIV NPLD++CNCYGSHV Sbjct: 47 GNRGFDVDSSKKNQSG----GAPNVKPASKKHSEFEHQNQFVRKEIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFIRNSASVFPAIAMDRSGSHVAESALKSLATHLENPDAYSVIEEALHSICKVIVDNPLDMMCNCYGSHV 224 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0016674 ID=g.arboreum_cottongen_reftransV1_0016674; Name=g.arboreum_cottongen_reftransV1_0016674; organism=Gossypium arboreum; type=contig; length=617bpback to top |