g.arboreum_cottongen_reftransV1_0016674, g.arboreum_cottongen_reftransV1_0016674 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0016674
Unique Nameg.arboreum_cottongen_reftransV1_0016674
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length617
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0016674:1..617 .
Chr10:15437580..15438865 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: D7TZJ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g00300 PE=4 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 6.386e-74
Identity = 117/182 (64.29%), Postives = 144/182 (79.12%), Query Frame = -1
Query:    3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548
            G   F+ +  +K ++    DGT K +K FKH   S+ +   +RKQV+PE AKYFSEIAN+ E   VD+EERSVICGNALEEARGKE ELATDYIIS+TLQ LL+GC++D+LC FL+ CA  FP IAMDRSGSHVAETA KSL+ H+QD E+YT++E+TL  ICKVIVVNP+D++CNCYGSHV
Sbjct:   22 GYREFEGDHRQKGLSGWGPDGTVKPEKPFKHKNTSEPKTYRLRKQVDPEMAKYFSEIANVIEGNEVDLEERSVICGNALEEARGKELELATDYIISHTLQALLEGCDVDHLCRFLQSCAKDFPYIAMDRSGSHVAETALKSLSLHLQDKESYTLVEETLATICKVIVVNPVDVMCNCYGSHV 203          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: W9R1Z5_9ROSA (Pumilio-23-like protein OS=Morus notabilis GN=L484_017989 PE=4 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.745e-72
Identity = 115/178 (64.61%), Postives = 141/178 (79.21%), Query Frame = -1
Query:    3 FDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 536
            FDD   KK V+ +  DG+ K +   KH  N      V+RKQV+PET KYFSEIANLFES GVD+EER+VICGNALEE RG EF+LATDYIIS+TLQ LL+GC++D+LC FLR CA  FP IA D+SGSHVAETA +SLA H+QD++ Y+++EDTL MICKV+V N +D++CNCYGSHV
Sbjct:   18 FDDTS-KKKVSGKAADGSFKTENFAKHRMNYAPHQSVVRKQVDPETTKYFSEIANLFESNGVDLEERAVICGNALEETRGNEFQLATDYIISHTLQMLLEGCDIDHLCDFLRSCAKDFPFIATDQSGSHVAETAIRSLAMHLQDSDVYSVVEDTLTMICKVVVENSVDVMCNCYGSHV 194          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A5C2P5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027501 PE=4 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 3.529e-72
Identity = 117/182 (64.29%), Postives = 145/182 (79.67%), Query Frame = -1
Query:    3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548
            G+  F+ +  +K ++    DGT K +K FKH   S+ +   +RKQV+PE AKYFSEIAN+ E   VD+EERSVICGNALEEARGKE ELATDYIIS+TLQ LL+GC++D+LC FL+ CA  FP IAMDRSGSHVAETA KSL+ H+QD E+YT++E+TL  ICKVIVVNP+D++CNCYGSHV
Sbjct:   22 GHREFEGDHRQKGLSGWGPDGTVKPEKPFKHKNTSEPKTYRLRKQVDPEMAKYFSEIANVIEGNEVDLEERSVICGNALEEARGKELELATDYIISHTLQALLEGCDVDHLCRFLQSCAKDFPYIAMDRSGSHVAETALKSLSLHLQDKESYTLVEETLATICKVIVVNPVDVMCNCYGSHV 203          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: V4KA41_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018182mg PE=4 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 6.885e-72
Identity = 113/182 (62.09%), Postives = 142/182 (78.02%), Query Frame = -1
Query:    3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548
            G+ GFD +  K+N +S    G    K + K     + Q   +RK+++PET+KYFSEIANLF+S  VD+EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSFLR  A +FPAIAMDRSGSHVAE+A KSLA H+++ +AY++IE+ L  ICKVIV NPLD++CNCYGSHV
Sbjct:   47 GSRGFDGDSNKRNQSS----GAANVKAAPKKQSEFEHQNQFVRKEIDPETSKYFSEIANLFDSNEVDIEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCQLDQLCSFLRNSATVFPAIAMDRSGSHVAESALKSLASHLENPDAYSVIEEALTSICKVIVDNPLDMMCNCYGSHV 224          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: M5X3T3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001862mg PE=4 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 7.663e-72
Identity = 111/153 (72.55%), Postives = 134/153 (87.58%), Query Frame = -1
Query:    3 HQNSDS--QAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 455
            H+ SDS  Q  V+RKQV+PET KYFSEIANL ES GVD+EERSV+CGNALEEARGKEFELATDY +S+T+QTLL+GC++++LCSFLR CA  FP+IAMDRSGSHVAETA KSL++H+QD + Y+++EDTL  ICKVIV NP DL+C+CYGSHV
Sbjct:   59 HRQSDSETQRSVVRKQVDPETTKYFSEIANLIESNGVDMEERSVVCGNALEEARGKEFELATDYYLSHTMQTLLEGCDVNSLCSFLRSCAKDFPSIAMDRSGSHVAETAIKSLSQHLQDNDVYSVVEDTLNAICKVIVKNPGDLMCDCYGSHV 211          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: B9T6F0_RICCO (Protein C14orf21, putative OS=Ricinus communis GN=RCOM_0333710 PE=4 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 4.961e-70
Identity = 108/140 (77.14%), Postives = 126/140 (90.00%), Query Frame = -1
Query:    3 RKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 422
            RKQV+PET +YFSEIANLFES G+D+EER+VICGNALEEARGKE+ELATDYIIS+TLQ LL+GC++D+LCSFLR CA  FP IAMDRSGSHVAETA KSLA H+QD EAY+IIE+TL +I KVIV NP+D++CN YGSHV
Sbjct:    6 RKQVDPETKQYFSEIANLFESSGIDLEERAVICGNALEEARGKEYELATDYIISHTLQNLLEGCDVDHLCSFLRSCAEFFPLIAMDRSGSHVAETALKSLATHLQDNEAYSIIEETLTVISKVIVANPVDMMCNRYGSHV 145          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: D7KZC3_ARALL (APUM23 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_476360 PE=4 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 3.158e-69
Identity = 110/182 (60.44%), Postives = 140/182 (76.92%), Query Frame = -1
Query:    3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548
            G  GFD +  K+N +     G    K + K     + Q   +RK+++PET+KYFSEIANLF+S  V++EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSF+R  A +FPAIAMDRSGSHVAE+A KSLA H+++ +AY++IE+ L  ICKVIV NPLD++CNCYGSHV
Sbjct:   47 GGRGFDGDSNKRNQSG----GAPNVKPASKKQSEFEHQNQFVRKEIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFIRNSATVFPAIAMDRSGSHVAESALKSLATHLENPDAYSVIEEALNSICKVIVDNPLDMMCNCYGSHV 224          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: R0I6I9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10019867mg PE=4 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 6.320e-69
Identity = 109/182 (59.89%), Postives = 140/182 (76.92%), Query Frame = -1
Query:    3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548
            G+ GFD +  K+N +     G    K   K     + Q   +RK+++PET+KYFSEIANLF+S  V++EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSF+R  A +FPAIAMDRSGSHVAE+A K+LA H+++ +AY++IE+ L  ICKVIV NPLD++CNCYGSHV
Sbjct:   25 GSRGFDGDSNKRNQSG----GAPSVKPVSKKQSEFEHQNQFVRKEIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFIRNSATVFPAIAMDRSGSHVAESALKALATHLENPDAYSVIEEALNSICKVIVDNPLDMLCNCYGSHV 202          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A0A0KCB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447980 PE=4 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 8.867e-69
Identity = 114/183 (62.30%), Postives = 141/183 (77.05%), Query Frame = -1
Query:    3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDS-QAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548
            G  GFD+N   +N +   TD   +  K F   +++ + Q+  IRKQV+PET KYF EI+NLF S  VD EERSVICGNALEEA GKEFELATDYIIS+T+Q+LL+GCN+++LC+FL  CAN FP IAMDRSGSHVAETA KSLA H+QD + Y+++EDTL  ICK IV N LD++CNC+GSHV
Sbjct:   48 GGHGFDENKTHRNASG--TDSGMRSNKKFTDSKSTSAPQSSFIRKQVDPETTKYFMEISNLFGSDNVDFEERSVICGNALEEAVGKEFELATDYIISHTMQSLLEGCNVEDLCNFLHSCANQFPFIAMDRSGSHVAETAIKSLAMHLQDEDVYSLVEDTLTAICKEIVANSLDVMCNCHGSHV 228          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A0D3D035_BRAOL (Uncharacterized protein (Fragment) OS=Brassica oleracea var. oleracea GN=APUM23 PE=4 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 7.130e-68
Identity = 108/182 (59.34%), Postives = 142/182 (78.02%), Query Frame = -1
Query:    3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548
            G  GFD +  K+N +    + +   K + K     + Q   +RK+++PET+KYFSEIANLF+S GVD+EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSFLR  A++FPAIAMD+SGSHVAE+A KSLA H+++ +AY++IE+ L  ICKVIV  PL++ICNC+GS+V
Sbjct:   98 GGRGFDRDSNKRNQS----NDSANVKAASKKQSEFEHQNQFVRKEIDPETSKYFSEIANLFDSNGVDLEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFLRNSASVFPAIAMDKSGSHVAESALKSLATHLENPDAYSVIEEALLSICKVIVEKPLEMICNCHGSYV 275          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy Swiss-Prot
Match: PUM23_ARATH (Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.966e-73
Identity = 113/182 (62.09%), Postives = 143/182 (78.57%), Query Frame = -1
Query:    3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548
            GN GFD +  KKN +     G    K + K H   + Q   +RK+++PET+KYFSEIANLF+S  V++EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSF+R  A++FPAIAMDRSGSHVAE+A KSLA H+++ +AY++IE+ L  ICKVIV NPLD++CNCYGSHV
Sbjct:   47 GNRGFDVDSSKKNQSG----GAPNVKPASKKHSEFEHQNQFVRKEIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFIRNSASVFPAIAMDRSGSHVAESALKSLATHLENPDAYSVIEEALHSICKVIVDNPLDMMCNCYGSHV 224          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7TZJ6_VITVI6.386e-7464.29Putative uncharacterized protein OS=Vitis vinifera... [more]
W9R1Z5_9ROSA2.745e-7264.61Pumilio-23-like protein OS=Morus notabilis GN=L484... [more]
A5C2P5_VITVI3.529e-7264.29Putative uncharacterized protein OS=Vitis vinifera... [more]
V4KA41_EUTSA6.885e-7262.09Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
M5X3T3_PRUPE7.663e-7272.55Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
B9T6F0_RICCO4.961e-7077.14Protein C14orf21, putative OS=Ricinus communis GN=... [more]
D7KZC3_ARALL3.158e-6960.44APUM23 OS=Arabidopsis lyrata subsp. lyrata GN=ARAL... [more]
R0I6I9_9BRAS6.320e-6959.89Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
A0A0A0KCB6_CUCSA8.867e-6962.30Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
A0A0D3D035_BRAOL7.130e-6859.34Uncharacterized protein (Fragment) OS=Brassica ole... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PUM23_ARATH1.966e-7362.09Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 50..191
e-value: 3.6E-27
score: 94.6
NoneNo IPR availablePANTHERPTHR13102:SF0NUCLEOLAR PROTEIN 9coord: 15..191
NoneNo IPR availablePANTHERPTHR13102PROTEIN C14ORF21coord: 15..191
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 75..191

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0016674 ID=g.arboreum_cottongen_reftransV1_0016674; Name=g.arboreum_cottongen_reftransV1_0016674; organism=Gossypium arboreum; type=contig; length=617bp
AGAACGTGAGATCCATAGCAATTGCATATTAAATCAAGGGGATTGACAAC
AATAACCTTGCATATCATTTTCAGAGTATCTTCAATAATGGTGTAGGCTT
CTGTGTCCTGAACATGCCTGGCTAATGACTTAAAAGCTGTCTCAGCTACA
TGAGAACCAGACCTGTCCATTGCAATAGCAGGAAAGATATTTGCACAGCC
TCGAAGGAAACTGCATAGATTGTCCAAATTACAGCCGTCGAGTAGAGTCT
GAAGAGTATTGCTTATGATATAATCTGTTGCTAATTCAAATTCCTTCCCC
CTAGCTTCTTCAAGAGCATTACCACATATAACTGATCGCTCCTCCACATC
CACTCCTTGGCTTTCAAAAAGGTTTGCAATCTCCGAAAAGTACTTTGCTG
TTTCAGGCTCAACCTGTTTCCTGATAACCGGTGCTTGTGAGTCCGAATTC
TGGTGATGCTTGAAAGATTTCTTAAATTTCCCAGTCCCATCAGTCACCTG
GCTCGTTACATTCTTTTTATAACCATTATCATCAAAACCACTATTTCCTT
TCTTTGCTTTTTTCCCCATTTTCATTTGCTTCCAAAGCTTCGACTTACAG
TGAGAGGCTAATTTTCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding