g.arboreum_cottongen_reftransV1_0018937, g.arboreum_cottongen_reftransV1_0018937 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A0D2RTG8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G035300 PE=4 SV=1) HSP 1 Score: 415.231 bits (1066), Expect = 2.198e-137 Identity = 221/222 (99.55%), Postives = 221/222 (99.55%), Query Frame = -3 Query: 212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFL VLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE Sbjct: 433 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLAVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 654
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A0D2TIR1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G035300 PE=4 SV=1) HSP 1 Score: 415.231 bits (1066), Expect = 4.287e-137 Identity = 221/222 (99.55%), Postives = 221/222 (99.55%), Query Frame = -3 Query: 212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFL VLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE Sbjct: 463 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLAVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 684
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A0B0P6U7_GOSAR (DENN domain-containing 4C OS=Gossypium arboreum GN=F383_07759 PE=4 SV=1) HSP 1 Score: 415.616 bits (1067), Expect = 5.932e-136 Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = -3 Query: 212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE Sbjct: 572 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 793
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A0D2Q8G7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G035300 PE=4 SV=1) HSP 1 Score: 414.461 bits (1064), Expect = 8.153e-136 Identity = 221/222 (99.55%), Postives = 221/222 (99.55%), Query Frame = -3 Query: 212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFL VLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE Sbjct: 550 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLAVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 771
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A0D2TCW8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G035300 PE=4 SV=1) HSP 1 Score: 414.461 bits (1064), Expect = 1.286e-135 Identity = 221/222 (99.55%), Postives = 221/222 (99.55%), Query Frame = -3 Query: 212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFL VLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE Sbjct: 565 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLAVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 786
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A0D2UFP1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G035300 PE=4 SV=1) HSP 1 Score: 414.846 bits (1065), Expect = 1.561e-135 Identity = 221/222 (99.55%), Postives = 221/222 (99.55%), Query Frame = -3 Query: 212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFL VLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE Sbjct: 580 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLAVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 801
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A061GLL0_THECC (DENN domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_037549 PE=4 SV=1) HSP 1 Score: 405.601 bits (1041), Expect = 8.930e-132 Identity = 216/222 (97.30%), Postives = 218/222 (98.20%), Query Frame = -3 Query: 212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877 CGSLRLEHVLTIFA ALLEKQIVVVCSNLGILSA VLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIK STIPQLPQHRELFACLSPYHAKLVGESYLGRKRPV+ECTDVQIEAAKGFL VLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLF+VHTDLVLSFIQKE Sbjct: 601 CGSLRLEHVLTIFAGALLEKQIVVVCSNLGILSATVLSIVPLIRPYQWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKASTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVYECTDVQIEAAKGFLSVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFSVHTDLVLSFIQKE 822
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A059CLW7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_C008221 PE=4 SV=1) HSP 1 Score: 374.785 bits (961), Expect = 2.742e-122 Identity = 192/222 (86.49%), Postives = 215/222 (96.85%), Query Frame = -3 Query: 212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877 CGSLRLE+VLT+FA ALLEKQI+VVCSNLGILSA+VLS++PLIRPYQWQSLLMPVLP+DML+FLDAPVPY+VG+KNKTSEVQSK+ANVILVDANKNQ+K+ +IPQLP+H+ELF+ LSPYHAKLVGES+LGRKRP++ECTDVQIEAAKGFL VLRSYLDSLCSN+RSHTITNVQSN+DKVSLLLKESFIDSF RDRPFMKLFVDTQLF+VHTDLVLSF QKE Sbjct: 390 CGSLRLENVLTLFAGALLEKQILVVCSNLGILSALVLSVIPLIRPYQWQSLLMPVLPNDMLEFLDAPVPYVVGIKNKTSEVQSKIANVILVDANKNQVKSPSIPQLPRHKELFSSLSPYHAKLVGESFLGRKRPMYECTDVQIEAAKGFLAVLRSYLDSLCSNLRSHTITNVQSNDDKVSLLLKESFIDSFNYRDRPFMKLFVDTQLFSVHTDLVLSFFQKE 611
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A022QF14_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a001758mg PE=4 SV=1) HSP 1 Score: 375.17 bits (962), Expect = 1.281e-120 Identity = 192/222 (86.49%), Postives = 214/222 (96.40%), Query Frame = -3 Query: 212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877 CGSLRLEHVLT+FA ALLEKQI+VVCSNLGILSA+VLSI+PLIRPYQWQSLLMPVLP+DMLDFLDAPVPYIVGV+NKT++VQ+KL N ILVDAN+NQ+KT TIPQLPQH+EL++ LSPYHAKLVGESYLG+KRPV+ECTDVQ+EAAKGFL VLRSYLD+LCSN+RSHTITNVQSN+DKVSLLLKESFI+SFPSRDRPFMKLFVDTQLF+VHTD VLSF QKE Sbjct: 543 CGSLRLEHVLTLFAGALLEKQILVVCSNLGILSALVLSIIPLIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVRNKTTDVQAKLTNAILVDANRNQVKTPTIPQLPQHKELYSSLSPYHAKLVGESYLGKKRPVYECTDVQVEAAKGFLGVLRSYLDNLCSNLRSHTITNVQSNDDKVSLLLKESFIESFPSRDRPFMKLFVDTQLFSVHTDFVLSFFQKE 764
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: D7TCG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g01240 PE=4 SV=1) HSP 1 Score: 374.785 bits (961), Expect = 2.722e-120 Identity = 198/222 (89.19%), Postives = 211/222 (95.05%), Query Frame = -3 Query: 212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877 CGSLRLE+VLT+FA ALLEKQIV VCSNLGILSA VLSIVPLIRPYQWQS LMPVLP+DMLDFLDAPVPYIVGVKNKTSEVQSKL NVILVD KNQ+K+STIPQLP+H+ELF+ LSPYHAKLVGESYLGRKRPV+ECTDVQIEAAKGFL VLRSYLD+LCSN+RSHTITNVQSN+DKVSLLLKESFIDSFPSRDRPFMK FVDTQLF+VHTDLVLSF QKE Sbjct: 567 CGSLRLENVLTLFAGALLEKQIVFVCSNLGILSASVLSIVPLIRPYQWQSWLMPVLPNDMLDFLDAPVPYIVGVKNKTSEVQSKLTNVILVDVYKNQVKSSTIPQLPKHKELFSSLSPYHAKLVGESYLGRKRPVYECTDVQIEAAKGFLGVLRSYLDTLCSNLRSHTITNVQSNDDKVSLLLKESFIDSFPSRDRPFMKHFVDTQLFSVHTDLVLSFFQKE 788
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN4C_HUMAN (DENN domain-containing protein 4C OS=Homo sapiens GN=DENND4C PE=1 SV=2) HSP 1 Score: 57.3806 bits (137), Expect = 7.605e-8 Identity = 59/229 (25.76%), Postives = 105/229 (45.85%), Query Frame = -3 Query: 254 EHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQI------KTSTIPQLPQH---------RELFACLSPYHAKLVGESYLGRKRPVH-------ECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKV--SLLLKESFIDSFPSRDRPFMKLFV---DTQLF 859 E+ T+ LLE +I++ +L+ + ++V +I P+QWQ +P+ P + L AP+P+IVGV ++ ++ +V+ +D + N + K QLP+ ++L+ LS H K S + P+ + T +++E + FL + S L + +R IT SN SL ++ F+ SRDR + K + TQ+F Sbjct: 167 ENCATLLLFVLLESKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAAVLSAPLPFIVGVDSRYFDLHDPPQDVVCIDLDTNMLYVSDEKKNMNWKQLPKKPCKNLLSTLKKLYPQLSSVHQKTQEGSAIDMT-PIEADFSWQKKMTQLEMEIQEAFLRFMASILKGYRTYLR--PITEAPSNKATAADSLFDRQGFLK---SRDRAYAKFYTLLSKTQIF 389
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5B_DANRE (DENN domain-containing protein 5B OS=Danio rerio GN=dennd5b PE=2 SV=2) HSP 1 Score: 56.225 bits (134), Expect = 1.972e-7 Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = -3 Query: 527 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHRELFACLS 868 L +E+++ +F LLE QI++ + L + I L+ P+QWQ + +P+LP +L FLDAPVPY++G+++K +SKL AN+ VD + + I+ PQ P E LS Sbjct: 304 LGVENLVQLFTCVLLEMQILLYSQDYQRLMVVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHCIELPEDFPQFPNRSEFIQELS 423
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5B_HUMAN (DENN domain-containing protein 5B OS=Homo sapiens GN=DENND5B PE=1 SV=2) HSP 1 Score: 55.8398 bits (133), Expect = 2.394e-7 Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = -3 Query: 527 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHRELFACLS 868 L LE+++ +F LLE QI++ + L + I L+ P+QWQ + +P+LP +L FLDAPVPY++G+++K +SKL AN+ VD + + I+ PQ P + LS Sbjct: 278 LGLENLVQVFTCVLLEMQILLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELS 397
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5B_MOUSE (DENN domain-containing protein 5B OS=Mus musculus GN=Dennd5b PE=1 SV=2) HSP 1 Score: 55.4546 bits (132), Expect = 2.866e-7 Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = -3 Query: 527 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHRELFACLS 877 C L LE+++ +F LLE Q ++ + L + I L+ P+QWQ + +P+LP +L FLDAPVPY++G+++K +SKL AN+ VD + + I+ PQ P + LS Sbjct: 275 CELLGLENLVQVFTCVLLEMQTLLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELS 397
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: SCD1_ARATH (DENN domain and WD repeat-containing protein SCD1 OS=Arabidopsis thaliana GN=SCD1 PE=1 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 3.454e-7 Identity = 33/106 (31.13%), Postives = 67/106 (63.21%), Query Frame = -3 Query: 554 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTS-TIPQLPQ 868 L +++++ +F + L+E++I++ + +L+ + SI LI P++W + +P+L +D++DAP PY++G+ + + V++VD + NQI TS IPQ+P+ Sbjct: 214 LDVDNLIKLFTSVLVERRILIRSNKYSLLTLVSESICHLIYPFRWLQVYIPLLFFSGVDYIDAPTPYMMGLHSDVDTSNLAMDGVVVVDLDINQITTSEEIPQIPE 319
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5A_MOUSE (DENN domain-containing protein 5A OS=Mus musculus GN=Dennd5a PE=1 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 4.075e-7 Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = -3 Query: 542 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHREL 868 L +E+V +F ALLE QI++ + L + +I L+ P+QWQ + +P+LP +L FLDAPVPY++G+ + + +SKL AN+ VD + + I+ +PQ P E Sbjct: 293 LGVENVFQLFTCALLEFQILLYSQHYQRLMTVAETITALMFPFQWQHVYVPILPASLLHFLDAPVPYLMGLHSNGLDDRSKLELPQEANLCFVDVDNHFIELPEDLPQFPNKLEF 407
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5A_HUMAN (DENN domain-containing protein 5A OS=Homo sapiens GN=DENND5A PE=1 SV=2) HSP 1 Score: 54.6842 bits (130), Expect = 6.103e-7 Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = -3 Query: 542 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHREL 868 L +E+V +F ALLE QI++ + L + +I L+ P+QWQ + +P+LP +L FLDAPVPY++G+ + + +SKL AN+ VD + + I+ +PQ P E Sbjct: 293 LGVENVFQLFTCALLEFQILLYSQHYQRLMTVAETITALMFPFQWQHVYVPILPASLLHFLDAPVPYLMGLHSNGLDDRSKLELPQEANLCFVDIDNHFIELPEDLPQFPNKLEF 407 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 7
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0018937 ID=g.arboreum_cottongen_reftransV1_0018937; Name=g.arboreum_cottongen_reftransV1_0018937; organism=Gossypium arboreum; type=contig; length=879bpback to top |