g.arboreum_cottongen_reftransV1_0018937, g.arboreum_cottongen_reftransV1_0018937 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: K7UKS0_MAIZE (Uncharacterized protein OS=Zea mays GN=si707014d12 PE=4 SV=1) HSP 1 Score: 339.732 bits (870), Expect = 5.114e-114 Identity = 171/213 (80.28%), Postives = 197/213 (92.49%), Query Frame = -3 Query: 212 LTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 850 +T+FAAALLEKQIV+VCSNLG+LSA VLSI+PLIRPYQWQSLLM VLP+DM+DFLDAPVPYIVGV+NKTS+V ++L N +++DAN+NQIK+S++PQLPQHREL + L PYH+ LVGESYL RKRPV+ECTD Q+E AKGFL VLR YLD+LCSN+RSHTITNVQSNNDKVSLLLKESFI SFPSRDRPFMKLFVDTQLF+VHTDLVLSF QK+ Sbjct: 1 MTLFAAALLEKQIVIVCSNLGMLSASVLSILPLIRPYQWQSLLMTVLPNDMMDFLDAPVPYIVGVQNKTSDVLNRLTNAVVIDANRNQIKSSSVPQLPQHRELLSALRPYHSILVGESYLARKRPVYECTDAQVEGAKGFLAVLRDYLDTLCSNLRSHTITNVQSNNDKVSLLLKESFIGSFPSRDRPFMKLFVDTQLFSVHTDLVLSFYQKD 213
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: W1PVD0_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00024p00229020 PE=4 SV=1) HSP 1 Score: 358.607 bits (919), Expect = 6.573e-114 Identity = 189/222 (85.14%), Postives = 208/222 (93.69%), Query Frame = -3 Query: 212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877 CGSLRLE++L +FA ALLEKQIVVVCSNLGILSA+VLSIVPLIRPYQWQSLLMPVLP+DMLDFLDAPVPYIVGVKNKT+EVQSKLANVILVD NKNQ+K+ +IPQLPQH+EL + L P+HAKLVGESYL +KR VHECTD Q EAAK FL VLR+YLDSLCSN+R+HTITNVQSNNDKVSLLLKESFI+SFP+RDRPFMKLFVDTQLF+VHTDLVLSF QKE Sbjct: 582 CGSLRLENILAMFAGALLEKQIVVVCSNLGILSAVVLSIVPLIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVKNKTAEVQSKLANVILVDVNKNQVKSPSIPQLPQHKELLSSLRPHHAKLVGESYLAKKRLVHECTDAQAEAAKCFLEVLRNYLDSLCSNLRAHTITNVQSNNDKVSLLLKESFIESFPARDRPFMKLFVDTQLFSVHTDLVLSFYQKE 803
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: K3YPX1_SETIT (Uncharacterized protein OS=Setaria italica GN=Si016294m.g PE=4 SV=1) HSP 1 Score: 355.91 bits (912), Expect = 1.215e-112 Identity = 180/222 (81.08%), Postives = 206/222 (92.79%), Query Frame = -3 Query: 212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877 CG LRLEHV+T+FAAALLEKQIV+VCSNLG+LSA VLSI+PLIRPYQWQSLL+PVLP DM+DFLDAPVPYIVGV+NK S+V ++LAN +++DAN+NQIK+S++PQLPQHREL A L PYH+ LVGESYL RKRPV+ECTD Q+EAAKGFL VLR YLD+LCSN+RSHTITNVQSNNDKVSLLL+ESFI SFPSRDRPFMKLFVDTQLF+VHTDLVLSF QK+ Sbjct: 606 CGCLRLEHVMTLFAAALLEKQIVIVCSNLGMLSASVLSIIPLIRPYQWQSLLIPVLPIDMMDFLDAPVPYIVGVQNKASDVLNRLANAVVIDANRNQIKSSSVPQLPQHRELLASLRPYHSILVGESYLARKRPVYECTDSQVEAAKGFLAVLRDYLDTLCSNLRSHTITNVQSNNDKVSLLLRESFIGSFPSRDRPFMKLFVDTQLFSVHTDLVLSFYQKD 827
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: K7U5I6_MAIZE (Uncharacterized protein OS=Zea mays GN=si707014d12 PE=4 SV=1) HSP 1 Score: 355.91 bits (912), Expect = 1.639e-112 Identity = 179/222 (80.63%), Postives = 205/222 (92.34%), Query Frame = -3 Query: 212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877 CG LRLEHV+T+FAAALLEKQIV+VCSNLG+LSA VLSI+PLIRPYQWQSLLM VLP+DM+DFLDAPVPYIVGV+NKTS+V ++L N +++DAN+NQIK+S++PQLPQHREL + L PYH+ LVGESYL RKRPV+ECTD Q+E AKGFL VLR YLD+LCSN+RSHTITNVQSNNDKVSLLLKESFI SFPSRDRPFMKLFVDTQLF+VHTDLVLSF QK+ Sbjct: 609 CGCLRLEHVMTLFAAALLEKQIVIVCSNLGMLSASVLSILPLIRPYQWQSLLMTVLPNDMMDFLDAPVPYIVGVQNKTSDVLNRLTNAVVIDANRNQIKSSSVPQLPQHRELLSALRPYHSILVGESYLARKRPVYECTDAQVEGAKGFLAVLRDYLDTLCSNLRSHTITNVQSNNDKVSLLLKESFIGSFPSRDRPFMKLFVDTQLFSVHTDLVLSFYQKD 830
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: J3LHM1_ORYBR (Uncharacterized protein OS=Oryza brachyantha GN=OB02G41380 PE=4 SV=1) HSP 1 Score: 355.525 bits (911), Expect = 2.255e-112 Identity = 178/222 (80.18%), Postives = 209/222 (94.14%), Query Frame = -3 Query: 212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877 CG LRLEHV+T+FAAALLEKQIV+VCSNLG+LSA VLSI+PLIRPYQWQSLL+PVLP+DM+DFLDAPVPYIVGV+NKTS+V S+LAN +++DANKNQIK++++PQLPQ +EL + L PYH++LVGES+L RKRPV+ECTD Q+EAAKGFL VLRSYLDSLCSN+RSHTITNVQSNNDKVSLLL+ESFI SFP+R+RPFMKLFVDTQLF+VHTDLVLSF QK+ Sbjct: 611 CGCLRLEHVMTLFAAALLEKQIVIVCSNLGMLSASVLSIIPLIRPYQWQSLLIPVLPNDMMDFLDAPVPYIVGVQNKTSDVHSRLANAVVIDANKNQIKSTSVPQLPQQKELLSALRPYHSRLVGESFLARKRPVYECTDAQVEAAKGFLAVLRSYLDSLCSNLRSHTITNVQSNNDKVSLLLRESFIGSFPTRERPFMKLFVDTQLFSVHTDLVLSFYQKD 832
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN4C_HUMAN (DENN domain-containing protein 4C OS=Homo sapiens GN=DENND4C PE=1 SV=2) HSP 1 Score: 57.3806 bits (137), Expect = 7.605e-8 Identity = 59/229 (25.76%), Postives = 105/229 (45.85%), Query Frame = -3 Query: 254 EHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQI------KTSTIPQLPQH---------RELFACLSPYHAKLVGESYLGRKRPVH-------ECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKV--SLLLKESFIDSFPSRDRPFMKLFV---DTQLF 859 E+ T+ LLE +I++ +L+ + ++V +I P+QWQ +P+ P + L AP+P+IVGV ++ ++ +V+ +D + N + K QLP+ ++L+ LS H K S + P+ + T +++E + FL + S L + +R IT SN SL ++ F+ SRDR + K + TQ+F Sbjct: 167 ENCATLLLFVLLESKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAAVLSAPLPFIVGVDSRYFDLHDPPQDVVCIDLDTNMLYVSDEKKNMNWKQLPKKPCKNLLSTLKKLYPQLSSVHQKTQEGSAIDMT-PIEADFSWQKKMTQLEMEIQEAFLRFMASILKGYRTYLR--PITEAPSNKATAADSLFDRQGFLK---SRDRAYAKFYTLLSKTQIF 389
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5B_DANRE (DENN domain-containing protein 5B OS=Danio rerio GN=dennd5b PE=2 SV=2) HSP 1 Score: 56.225 bits (134), Expect = 1.972e-7 Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = -3 Query: 527 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHRELFACLS 868 L +E+++ +F LLE QI++ + L + I L+ P+QWQ + +P+LP +L FLDAPVPY++G+++K +SKL AN+ VD + + I+ PQ P E LS Sbjct: 304 LGVENLVQLFTCVLLEMQILLYSQDYQRLMVVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHCIELPEDFPQFPNRSEFIQELS 423
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5B_HUMAN (DENN domain-containing protein 5B OS=Homo sapiens GN=DENND5B PE=1 SV=2) HSP 1 Score: 55.8398 bits (133), Expect = 2.394e-7 Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = -3 Query: 527 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHRELFACLS 868 L LE+++ +F LLE QI++ + L + I L+ P+QWQ + +P+LP +L FLDAPVPY++G+++K +SKL AN+ VD + + I+ PQ P + LS Sbjct: 278 LGLENLVQVFTCVLLEMQILLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELS 397
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5B_MOUSE (DENN domain-containing protein 5B OS=Mus musculus GN=Dennd5b PE=1 SV=2) HSP 1 Score: 55.4546 bits (132), Expect = 2.866e-7 Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = -3 Query: 527 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHRELFACLS 877 C L LE+++ +F LLE Q ++ + L + I L+ P+QWQ + +P+LP +L FLDAPVPY++G+++K +SKL AN+ VD + + I+ PQ P + LS Sbjct: 275 CELLGLENLVQVFTCVLLEMQTLLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELS 397
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: SCD1_ARATH (DENN domain and WD repeat-containing protein SCD1 OS=Arabidopsis thaliana GN=SCD1 PE=1 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 3.454e-7 Identity = 33/106 (31.13%), Postives = 67/106 (63.21%), Query Frame = -3 Query: 554 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTS-TIPQLPQ 868 L +++++ +F + L+E++I++ + +L+ + SI LI P++W + +P+L +D++DAP PY++G+ + + V++VD + NQI TS IPQ+P+ Sbjct: 214 LDVDNLIKLFTSVLVERRILIRSNKYSLLTLVSESICHLIYPFRWLQVYIPLLFFSGVDYIDAPTPYMMGLHSDVDTSNLAMDGVVVVDLDINQITTSEEIPQIPE 319
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5A_MOUSE (DENN domain-containing protein 5A OS=Mus musculus GN=Dennd5a PE=1 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 4.075e-7 Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = -3 Query: 542 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHREL 868 L +E+V +F ALLE QI++ + L + +I L+ P+QWQ + +P+LP +L FLDAPVPY++G+ + + +SKL AN+ VD + + I+ +PQ P E Sbjct: 293 LGVENVFQLFTCALLEFQILLYSQHYQRLMTVAETITALMFPFQWQHVYVPILPASLLHFLDAPVPYLMGLHSNGLDDRSKLELPQEANLCFVDVDNHFIELPEDLPQFPNKLEF 407
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5A_HUMAN (DENN domain-containing protein 5A OS=Homo sapiens GN=DENND5A PE=1 SV=2) HSP 1 Score: 54.6842 bits (130), Expect = 6.103e-7 Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = -3 Query: 542 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHREL 868 L +E+V +F ALLE QI++ + L + +I L+ P+QWQ + +P+LP +L FLDAPVPY++G+ + + +SKL AN+ VD + + I+ +PQ P E Sbjct: 293 LGVENVFQLFTCALLEFQILLYSQHYQRLMTVAETITALMFPFQWQHVYVPILPASLLHFLDAPVPYLMGLHSNGLDDRSKLELPQEANLCFVDIDNHFIELPEDLPQFPNKLEF 407 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 7
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0018937 ID=g.arboreum_cottongen_reftransV1_0018937; Name=g.arboreum_cottongen_reftransV1_0018937; organism=Gossypium arboreum; type=contig; length=879bpback to top |