g.arboreum_cottongen_reftransV1_0018937, g.arboreum_cottongen_reftransV1_0018937 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0018937
Unique Name	g.arboreum_cottongen_reftransV1_0018937
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	879

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr8	chromosome	g.arboreum_cottongen_reftransV1_0018937:1..879 . Chr8:59023235..59027262 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: B4FJ03_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 3.128e-120
Identity = 179/222 (80.63%), Postives = 205/222 (92.34%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CG LRLEHV+T+FAAALLEKQIV+VCSNLG+LSA VLSI+PLIRPYQWQSLLM VLP+DM+DFLDAPVPYIVGV+NKTS+V ++L N +++DAN+NQIK+S++PQLPQHREL + L PYH+ LVGESYL RKRPV+ECTD Q+E AKGFL VLR YLD+LCSN+RSHTITNVQSNNDKVSLLLKESFI SFPSRDRPFMKLFVDTQLF+VHTDLVLSF QK+
Sbjct:   23 CGCLRLEHVMTLFAAALLEKQIVIVCSNLGMLSASVLSILPLIRPYQWQSLLMTVLPNDMMDFLDAPVPYIVGVQNKTSDVLNRLTNAVVIDANRNQIKSSSVPQLPQHRELLSALRPYHSILVGESYLERKRPVYECTDAQVEGAKGFLAVLRDYLDTLCSNLRSHTITNVQSNNDKVSLLLKESFIGSFPSRDRPFMKLFVDTQLFSVHTDLVLSFYQKD 244

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: V4WE49_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007498mg PE=4 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 3.734e-120
Identity = 198/222 (89.19%), Postives = 214/222 (96.40%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLE+VLT+FAAALLEKQIVVVCSNLGILSA VLSI+PLIRPY+WQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQ+KL NVILVDANKNQ+K  +IPQLPQH++LF+ LSPYHAKLVGESYLG+KRPV+ECTDVQIEAAKGFL VLRSYLDSLCSN+RSHTITNVQSNNDKVSLLLKESFIDSFPSR RPFM+LFVDTQLF+VHTDLVLSF QK+
Sbjct:  578 CGSLRLENVLTMFAAALLEKQIVVVCSNLGILSASVLSIIPLIRPYRWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQNKLTNVILVDANKNQVKAPSIPQLPQHKQLFSSLSPYHAKLVGESYLGKKRPVYECTDVQIEAAKGFLSVLRSYLDSLCSNLRSHTITNVQSNNDKVSLLLKESFIDSFPSRHRPFMRLFVDTQLFSVHTDLVLSFFQKQ 799

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A067EHX9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003143mg PE=4 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 3.774e-120
Identity = 198/222 (89.19%), Postives = 214/222 (96.40%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLE+VLT+FAAALLEKQIVVVCSNLGILSA VLSI+PLIRPY+WQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQ+KL NVILVDANKNQ+K  +IPQLPQH++LF+ LSPYHAKLVGESYLG+KRPV+ECTDVQIEAAKGFL VLRSYLDSLCSN+RSHTITNVQSNNDKVSLLLKESFIDSFPSR RPFM+LFVDTQLF+VHTDLVLSF QK+
Sbjct:  578 CGSLRLENVLTMFAAALLEKQIVVVCSNLGILSASVLSIIPLIRPYRWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQNKLTNVILVDANKNQVKAPSIPQLPQHKQLFSSLSPYHAKLVGESYLGKKRPVYECTDVQIEAAKGFLSVLRSYLDSLCSNLRSHTITNVQSNNDKVSLLLKESFIDSFPSRHRPFMRLFVDTQLFSVHTDLVLSFFQKQ 799

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: B9MSY2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s14550g PE=4 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 5.016e-120
Identity = 197/222 (88.74%), Postives = 212/222 (95.50%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLEH+LT+FA ALLEKQIVVVCSNLGILSA VLSIVPLIRPY+WQSLLMP+LPDDML+FLDAPVPYIVGVKNKTSEVQSKL+NVILVDANKNQ+K+  IPQLP+HREL + LSPYH+KLVGESYL RKRPV+ECTDVQ+EAAKGFL VLRSYLDSLCSN+RSHTITNVQSNNDKVSLLLKESFIDSF SRDRPFMKLFVDTQLF+VHTDLVLSF QKE
Sbjct:  581 CGSLRLEHILTMFAGALLEKQIVVVCSNLGILSASVLSIVPLIRPYRWQSLLMPILPDDMLEFLDAPVPYIVGVKNKTSEVQSKLSNVILVDANKNQVKSPAIPQLPKHRELLSSLSPYHSKLVGESYLARKRPVYECTDVQVEAAKGFLGVLRSYLDSLCSNLRSHTITNVQSNNDKVSLLLKESFIDSFLSRDRPFMKLFVDTQLFSVHTDLVLSFFQKE 802

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A067EEI9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003143mg PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 1.556e-119
Identity = 198/222 (89.19%), Postives = 214/222 (96.40%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLE+VLT+FAAALLEKQIVVVCSNLGILSA VLSI+PLIRPY+WQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQ+KL NVILVDANKNQ+K  +IPQLPQH++LF+ LSPYHAKLVGESYLG+KRPV+ECTDVQIEAAKGFL VLRSYLDSLCSN+RSHTITNVQSNNDKVSLLLKESFIDSFPSR RPFM+LFVDTQLF+VHTDLVLSF QK+
Sbjct:  623 CGSLRLENVLTMFAAALLEKQIVVVCSNLGILSASVLSIIPLIRPYRWQSLLMPVLPDDMLDFLDAPVPYIVGVKNKTSEVQNKLTNVILVDANKNQVKAPSIPQLPQHKQLFSSLSPYHAKLVGESYLGKKRPVYECTDVQIEAAKGFLSVLRSYLDSLCSNLRSHTITNVQSNNDKVSLLLKESFIDSFPSRHRPFMRLFVDTQLFSVHTDLVLSFFQKQ 844

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: K4CE34_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc07g041660.2 PE=4 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 8.417e-119
Identity = 191/222 (86.04%), Postives = 210/222 (94.59%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLEHVLT+FA ALLEKQIVVVCSNLGILSA +LSI+PLIRPYQWQSLLMP+LP+DMLDFLDAPVPYIVGVKNKTSEVQSKL N ILVDANKNQ+K+ T+PQLPQ +EL++CLSPYHAKLVGESYL RKRPV+ECT +Q+EAAK FL VLRSYLDSLCSN+RSHTITNVQSN+DKVSLLLKESFI+SFPSRDRPFMKLF+DTQLF+VHTD VLSF QKE
Sbjct:  512 CGSLRLEHVLTLFAGALLEKQIVVVCSNLGILSACILSIIPLIRPYQWQSLLMPLLPNDMLDFLDAPVPYIVGVKNKTSEVQSKLTNAILVDANKNQVKSPTLPQLPQQKELYSCLSPYHAKLVGESYLARKRPVYECTVIQVEAAKSFLGVLRSYLDSLCSNLRSHTITNVQSNDDKVSLLLKESFIESFPSRDRPFMKLFLDTQLFSVHTDFVLSFFQKE 733

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: M5W9B8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001531mg PE=4 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 5.466e-118
Identity = 193/222 (86.94%), Postives = 212/222 (95.50%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLE+VLT+FA ALLEKQIV++ SNLGILSA VLSI+PLIRPYQWQSLLMPVLP+DMLDFLDAPVPYIVGVKNKT+EVQSKLANVILVDANKNQ+K+ T+PQLPQH+ELF+ LSPYHAKLVGES+L RKRPV+ECT  Q+EAAKGFL VLR+YLDSLCSN+RSHTITNVQSN+DKVSLLLKESFIDSFPSRDRPFMKLFVDTQLF+VHTDLVLSF QKE
Sbjct:  586 CGSLRLENVLTLFAGALLEKQIVIISSNLGILSASVLSIIPLIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVKNKTNEVQSKLANVILVDANKNQVKSPTLPQLPQHKELFSSLSPYHAKLVGESFLARKRPVYECTAEQVEAAKGFLSVLRTYLDSLCSNLRSHTITNVQSNDDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFSVHTDLVLSFFQKE 807

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A0A0LIL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000160 PE=4 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 7.627e-117
Identity = 190/222 (85.59%), Postives = 208/222 (93.69%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLEH+L+I A ALLEKQIVVVCSNLGILSA VLSI+P+IRPYQWQSLLMPVLP+DMLDFLDAPVPYIVGVKNKTSEVQSKL N +LVD NKNQ+K  TIPQLP+ +ELF+ L PYHA+LVGES+LGRKRPVHECTDVQ+EAAKGFL VLR YLDSLCSN+RSHTITNVQSN+DKVSLLLKESFI+SFPSRDRPF+KLFVDTQLF+VHTDLVLSF QKE
Sbjct:  577 CGSLRLEHILSILAGALLEKQIVVVCSNLGILSASVLSIIPMIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVKNKTSEVQSKLTNAVLVDVNKNQVKAPTIPQLPKQKELFSSLRPYHAELVGESFLGRKRPVHECTDVQVEAAKGFLKVLRLYLDSLCSNLRSHTITNVQSNDDKVSLLLKESFIESFPSRDRPFLKLFVDTQLFSVHTDLVLSFFQKE 798

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: A0A068U660_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_9 OS=Coffea canephora GN=GSCOC_T00041581001 PE=4 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 8.698e-116
Identity = 188/222 (84.68%), Postives = 208/222 (93.69%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CGSLRLEHVLT+FA ALLEKQ+ VVCSNLG+LSA VLSI+PLIRPYQWQSLLMPVLP+DMLDFLDAPVPYIVGVKNKT+EVQSKL NVILVD NKNQ+K+ T+P LPQ+REL++ LSPYHAKLVGESYLGRKRP+HECTD Q++AAK FL VLR+YLDSLCSN+RSHTITNVQSN+DKVSLLLKESFI+SFPSRDR FMKLFVDTQLF+VHTD VLSF QKE
Sbjct:  586 CGSLRLEHVLTLFAGALLEKQVAVVCSNLGVLSASVLSIIPLIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVKNKTTEVQSKLTNVILVDMNKNQVKSPTMPTLPQYRELYSSLSPYHAKLVGESYLGRKRPIHECTDAQVDAAKSFLSVLRAYLDSLCSNLRSHTITNVQSNDDKVSLLLKESFIESFPSRDRSFMKLFVDTQLFSVHTDFVLSFFQKE 807

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Match: C4JAH4_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 1.969e-115
Identity = 179/222 (80.63%), Postives = 205/222 (92.34%), Query Frame = -3

Query:  212 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTSTIPQLPQHRELFACLSPYHAKLVGESYLGRKRPVHECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKVSLLLKESFIDSFPSRDRPFMKLFVDTQLFTVHTDLVLSFIQKE 877
            CG LRLEHV+T+FAAALLEKQIV+VCSNLG+LSA VLSI+PLIRPYQWQSLLM VLP+DM+DFLDAPVPYIVGV+NKTS+V ++L N +++DAN+NQIK+S++PQLPQHREL + L PYH+ LVGESYL RKRPV+ECTD Q+E AKGFL VLR YLD+LCSN+RSHTITNVQSNNDKVSLLLKESFI SFPSRDRPFMKLFVDTQLF+VHTDLVLSF QK+
Sbjct:  355 CGCLRLEHVMTLFAAALLEKQIVIVCSNLGMLSASVLSILPLIRPYQWQSLLMTVLPNDMMDFLDAPVPYIVGVQNKTSDVLNRLTNAVVIDANRNQIKSSSVPQLPQHRELLSALRPYHSILVGESYLARKRPVYECTDAQVEGAKGFLAVLRDYLDTLCSNLRSHTITNVQSNNDKVSLLLKESFIGSFPSRDRPFMKLFVDTQLFSVHTDLVLSFYQKD 576

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN4C_HUMAN (DENN domain-containing protein 4C OS=Homo sapiens GN=DENND4C PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 7.605e-8
Identity = 59/229 (25.76%), Postives = 105/229 (45.85%), Query Frame = -3

Query:  254 EHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQI------KTSTIPQLPQH---------RELFACLSPYHAKLVGESYLGRKRPVH-------ECTDVQIEAAKGFLVVLRSYLDSLCSNMRSHTITNVQSNNDKV--SLLLKESFIDSFPSRDRPFMKLFV---DTQLF 859
            E+  T+    LLE +I++      +L+ +  ++V +I P+QWQ   +P+ P  +   L AP+P+IVGV ++  ++     +V+ +D + N +      K     QLP+          ++L+  LS  H K    S +    P+        + T +++E  + FL  + S L    + +R   IT   SN      SL  ++ F+    SRDR + K +     TQ+F
Sbjct:  167 ENCATLLLFVLLESKILLHSLRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAAVLSAPLPFIVGVDSRYFDLHDPPQDVVCIDLDTNMLYVSDEKKNMNWKQLPKKPCKNLLSTLKKLYPQLSSVHQKTQEGSAIDMT-PIEADFSWQKKMTQLEMEIQEAFLRFMASILKGYRTYLR--PITEAPSNKATAADSLFDRQGFLK---SRDRAYAKFYTLLSKTQIF 389

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5B_DANRE (DENN domain-containing protein 5B OS=Danio rerio GN=dennd5b PE=2 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 1.972e-7
Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = -3

Query:  527 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHRELFACLS 868
            L +E+++ +F   LLE QI++   +   L  +   I  L+ P+QWQ + +P+LP  +L FLDAPVPY++G+++K    +SKL     AN+  VD + + I+     PQ P   E    LS
Sbjct:  304 LGVENLVQLFTCVLLEMQILLYSQDYQRLMVVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHCIELPEDFPQFPNRSEFIQELS 423

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5B_HUMAN (DENN domain-containing protein 5B OS=Homo sapiens GN=DENND5B PE=1 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 2.394e-7
Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = -3

Query:  527 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHRELFACLS 868
            L LE+++ +F   LLE QI++   +   L  +   I  L+ P+QWQ + +P+LP  +L FLDAPVPY++G+++K    +SKL     AN+  VD + + I+     PQ P   +    LS
Sbjct:  278 LGLENLVQVFTCVLLEMQILLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELS 397

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5B_MOUSE (DENN domain-containing protein 5B OS=Mus musculus GN=Dennd5b PE=1 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 2.866e-7
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = -3

Query:  527 CGSLRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHRELFACLS 877
            C  L LE+++ +F   LLE Q ++   +   L  +   I  L+ P+QWQ + +P+LP  +L FLDAPVPY++G+++K    +SKL     AN+  VD + + I+     PQ P   +    LS
Sbjct:  275 CELLGLENLVQVFTCVLLEMQTLLYSQDYQRLMTVAEGITTLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLQSKEGTDRSKLELPQEANLCFVDIDNHFIELPEEFPQFPNKVDFIQELS 397

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: SCD1_ARATH (DENN domain and WD repeat-containing protein SCD1 OS=Arabidopsis thaliana GN=SCD1 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 3.454e-7
Identity = 33/106 (31.13%), Postives = 67/106 (63.21%), Query Frame = -3

Query:  554 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKLANVILVDANKNQIKTS-TIPQLPQ 868
            L +++++ +F + L+E++I++  +   +L+ +  SI  LI P++W  + +P+L    +D++DAP PY++G+ +        +  V++VD + NQI TS  IPQ+P+
Sbjct:  214 LDVDNLIKLFTSVLVERRILIRSNKYSLLTLVSESICHLIYPFRWLQVYIPLLFFSGVDYIDAPTPYMMGLHSDVDTSNLAMDGVVVVDLDINQITTSEEIPQIPE 319

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5A_MOUSE (DENN domain-containing protein 5A OS=Mus musculus GN=Dennd5a PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 4.075e-7
Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = -3

Query:  542 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHREL 868
            L +E+V  +F  ALLE QI++   +   L  +  +I  L+ P+QWQ + +P+LP  +L FLDAPVPY++G+ +   + +SKL     AN+  VD + + I+    +PQ P   E 
Sbjct:  293 LGVENVFQLFTCALLEFQILLYSQHYQRLMTVAETITALMFPFQWQHVYVPILPASLLHFLDAPVPYLMGLHSNGLDDRSKLELPQEANLCFVDVDNHFIELPEDLPQFPNKLEF 407

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Match: DEN5A_HUMAN (DENN domain-containing protein 5A OS=Homo sapiens GN=DENND5A PE=1 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 6.103e-7
Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = -3

Query:  542 LRLEHVLTIFAAALLEKQIVVVCSNLGILSAIVLSIVPLIRPYQWQSXXXXXXXXXXXXXXDAPVPYIVGVKNKTSEVQSKL-----ANVILVDANKNQIK-TSTIPQLPQHREL 868
            L +E+V  +F  ALLE QI++   +   L  +  +I  L+ P+QWQ + +P+LP  +L FLDAPVPY++G+ +   + +SKL     AN+  VD + + I+    +PQ P   E 
Sbjct:  293 LGVENVFQLFTCALLEFQILLYSQHYQRLMTVAETITALMFPFQWQHVYVPILPASLLHFLDAPVPYLMGLHSNGLDDRSKLELPQEANLCFVDIDNHFIELPEDLPQFPNKLEF 407

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
B4FJ03_MAIZE	3.128e-120	80.63	Uncharacterized protein OS=Zea mays PE=2 SV=1	[more]
V4WE49_9ROSI	3.734e-120	89.19	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067EHX9_CITSI	3.774e-120	89.19	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
B9MSY2_POPTR	5.016e-120	88.74	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
A0A067EEI9_CITSI	1.556e-119	89.19	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
K4CE34_SOLLC	8.417e-119	86.04	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
M5W9B8_PRUPE	5.466e-118	86.94	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
A0A0A0LIL0_CUCSA	7.627e-117	85.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
A0A068U660_COFCA	8.698e-116	84.68	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
C4JAH4_MAIZE	1.969e-115	80.63	Uncharacterized protein OS=Zea mays PE=2 SV=1	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0018937 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 7


Match Name	E-value	Identity	Description
DEN4C_HUMAN	7.605e-8	25.76	DENN domain-containing protein 4C OS=Homo sapiens ...	[more]
DEN5B_DANRE	1.972e-7	35.83	DENN domain-containing protein 5B OS=Danio rerio G...	[more]
DEN5B_HUMAN	2.394e-7	35.83	DENN domain-containing protein 5B OS=Homo sapiens ...	[more]
DEN5B_MOUSE	2.866e-7	34.96	DENN domain-containing protein 5B OS=Mus musculus ...	[more]
SCD1_ARATH	3.454e-7	31.13	DENN domain and WD repeat-containing protein SCD1 ...	[more]
DEN5A_MOUSE	4.075e-7	36.52	DENN domain-containing protein 5A OS=Mus musculus ...	[more]
DEN5A_HUMAN	6.103e-7	36.52	DENN domain-containing protein 5A OS=Homo sapiens ...	[more]

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001194	DENN domain	SMART	SM00799	DENN_cls	coord: 1..93 e-value: 1.8E-4 score: 3.9
IPR001194	DENN domain	PFAM	PF02141	DENN	coord: 2..92 e-value: 1.4E-24 score: 86.9
IPR001194	DENN domain	PROSITE	PS50211	DENN	coord: 1..93 score: 23.283
None	No IPR available	PANTHER	PTHR15288	SUPPRESSION OF TUMORIGENICITY 5 ST5	coord: 1..219
None	No IPR available	PANTHER	PTHR15288:SF4	DENN (AEX-3) DOMAIN-CONTAINING PROTEIN	coord: 1..219
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 41..219
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 19..40
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..18
None	No IPR available	TMHMM	TMhelix		coord: 21..40
IPR005112	dDENN domain	PROSITE	PS50947	DDENN	coord: 138..219 score: 10.701

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0018937 ID=g.arboreum_cottongen_reftransV1_0018937; Name=g.arboreum_cottongen_reftransV1_0018937; organism=Gossypium arboreum; type=contig; length=879bp
GCAATTTTCAGGTTGCCAAATGGCACGGGGAGAATTGGGTTGAAGGAAAA
ATAAATATATAAATACACTTTTACAAACCCTATAAAATCCTTTTTCTTTT
TCCTTTTTTTCTGCTGATTTTGATAAAATAATTTGACATTATATATTGCT
TAACTTATGTTCAAGTTACAACACTACAATAGCACACCATCTTTGGATGA
TTGTTGTCCTATTCCTTCTGGATAAATGAGAGAACAAGATCTGTATGTAC
AGTAAAGAGTTGTGTGTCCACAAACAGCTTCATAAATGGTCGATCACGAC
TAGGGAATGAATCAATGAAACTCTCTTTTAAAAGCAACGATACCTTATCA
TTATTGGACTGTACATTTGTAATTGTGTGTGACCGCATGTTAGAGCAAAG
AGAATCCAAGTATGATCTTAACACCACTAAAAAACCTTTGGCAGCTTCAA
TCTGCACATCTGTGCACTCATGTACTGGTCTTTTCCTCCCCAAATAACTT
TCACCGACAAGCTTTGCATGATAAGGACTCAAGCATGCAAAGAGCTCCCT
ATGTTGTGGCAGCTGTGGTATTGTGGACGTCTTTATCTGGTTCTTATTAG
CATCGACCAGAATTACATTGGCTAACTTTGACTGCACTTCACTCGTTTTG
TTCTTTACACCAACTATGTAAGGAACAGGCGCATCTAAGAAGTCTAGCAT
ATCATCTGGCAAAACCGGCATCAAGAGGCTTTGCCATTGGTATGGCCGGA
TCAGAGGGACAATTGACAAAACTATAGCAGATAAAATTCCCAAATTTGAA
CAAACAACCACAATCTGTTTCTCCAGCAATGCTGCTGCAAAGATTGTTAG
AACATGTTCAAGCCGCAGAGATCCACACA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001194	cDENN_dom
IPR005112	dDENN_dom

Search form

g.arboreum_cottongen_reftransV1_0018937, g.arboreum_cottongen_reftransV1_0018937 (contig) Gossypium arboreum

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