g.arboreum_cottongen_reftransV1_0005690, g.arboreum_cottongen_reftransV1_0005690 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A0B0PZG2_GOSAR (Sn1-specific diacylglycerol lipase alpha OS=Gossypium arboreum GN=F383_03154 PE=4 SV=1) HSP 1 Score: 262.692 bits (670), Expect = 3.080e-82 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = -3 Query: 3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY Sbjct: 1 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 123
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: Q1RN86_GOSHI (Calmodulin-binding heat shock protein OS=Gossypium hirsutum PE=4 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 3.777e-82 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = -3 Query: 3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY Sbjct: 1 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 123
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: Q1RN82_GOSHI (Calmodulin binding heat shock protein OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 254.988 bits (650), Expect = 2.479e-79 Identity = 119/123 (96.75%), Postives = 122/123 (99.19%), Query Frame = -3 Query: 3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371 MSIICGLPLL CIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTY+DTRG+APSYILYLDHEH+DIVLAIRGLNLAKESDY Sbjct: 1 MSIICGLPLLGCIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYKDTRGRAPSYILYLDHEHSDIVLAIRGLNLAKESDY 123
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A0D2UAV2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G276100 PE=4 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 2.991e-79 Identity = 119/123 (96.75%), Postives = 122/123 (99.19%), Query Frame = -3 Query: 3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVT GLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTY+DTRG+APSYILYLDHEH+DIVLAIRGLNLAKESDY Sbjct: 1 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTCGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYKDTRGRAPSYILYLDHEHSDIVLAIRGLNLAKESDY 123
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A0D2RNK3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G276100 PE=4 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 5.198e-79 Identity = 119/123 (96.75%), Postives = 122/123 (99.19%), Query Frame = -3 Query: 3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVT GLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTY+DTRG+APSYILYLDHEH+DIVLAIRGLNLAKESDY Sbjct: 1 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTCGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYKDTRGRAPSYILYLDHEHSDIVLAIRGLNLAKESDY 123
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A061G228_THECC (Alpha/beta-Hydrolases superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_015194 PE=4 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 9.467e-75 Identity = 112/123 (91.06%), Postives = 119/123 (96.75%), Query Frame = -3 Query: 3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371 MSIICGLPLLEC+YCLACARWAW RCLHTAGHDS TWGLATAEEFEPVPRLCRYILAVYE+++ HPLWEPPGGYGINPDWLI RKTYEDT+G+APSYILYLDH+HADIVLAIRGLNLAKESDY Sbjct: 1 MSIICGLPLLECVYCLACARWAWKRCLHTAGHDSETWGLATAEEFEPVPRLCRYILAVYEEDLWHPLWEPPGGYGINPDWLIRRKTYEDTQGRAPSYILYLDHDHADIVLAIRGLNLAKESDY 123
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A061G0Z1_THECC (Alpha/beta-Hydrolases superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_015194 PE=4 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 1.772e-74 Identity = 112/123 (91.06%), Postives = 119/123 (96.75%), Query Frame = -3 Query: 3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371 MSIICGLPLLEC+YCLACARWAW RCLHTAGHDS TWGLATAEEFEPVPRLCRYILAVYE+++ HPLWEPPGGYGINPDWLI RKTYEDT+G+APSYILYLDH+HADIVLAIRGLNLAKESDY Sbjct: 1 MSIICGLPLLECVYCLACARWAWKRCLHTAGHDSETWGLATAEEFEPVPRLCRYILAVYEEDLWHPLWEPPGGYGINPDWLIRRKTYEDTQGRAPSYILYLDHDHADIVLAIRGLNLAKESDY 123
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A0D2RQH0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G048400 PE=4 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 6.663e-74 Identity = 110/123 (89.43%), Postives = 120/123 (97.56%), Query Frame = -3 Query: 3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371 MSIICG+PLLEC+YCLACARWAW RCLHTAGHDS TWGLATAEEFEPVPRLCRYILAVYE+++RHPL+EPPGGYGINPDWLILRKTYE+T+G+AP YILYLDH+HADIVLAIRGLNLAKESDY Sbjct: 1 MSIICGVPLLECVYCLACARWAWKRCLHTAGHDSETWGLATAEEFEPVPRLCRYILAVYEEDLRHPLFEPPGGYGINPDWLILRKTYENTQGRAPPYILYLDHDHADIVLAIRGLNLAKESDY 123
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A0D2RX92_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G048400 PE=4 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 1.048e-73 Identity = 110/123 (89.43%), Postives = 120/123 (97.56%), Query Frame = -3 Query: 3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371 MSIICG+PLLEC+YCLACARWAW RCLHTAGHDS TWGLATAEEFEPVPRLCRYILAVYE+++RHPL+EPPGGYGINPDWLILRKTYE+T+G+AP YILYLDH+HADIVLAIRGLNLAKESDY Sbjct: 1 MSIICGVPLLECVYCLACARWAWKRCLHTAGHDSETWGLATAEEFEPVPRLCRYILAVYEEDLRHPLFEPPGGYGINPDWLILRKTYENTQGRAPPYILYLDHDHADIVLAIRGLNLAKESDY 123
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A0D2SS69_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G048400 PE=4 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 1.283e-73 Identity = 110/123 (89.43%), Postives = 120/123 (97.56%), Query Frame = -3 Query: 3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371 MSIICG+PLLEC+YCLACARWAW RCLHTAGHDS TWGLATAEEFEPVPRLCRYILAVYE+++RHPL+EPPGGYGINPDWLILRKTYE+T+G+AP YILYLDH+HADIVLAIRGLNLAKESDY Sbjct: 1 MSIICGVPLLECVYCLACARWAWKRCLHTAGHDSETWGLATAEEFEPVPRLCRYILAVYEEDLRHPLFEPPGGYGINPDWLILRKTYENTQGRAPPYILYLDHDHADIVLAIRGLNLAKESDY 123 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0005690 ID=g.arboreum_cottongen_reftransV1_0005690; Name=g.arboreum_cottongen_reftransV1_0005690; organism=Gossypium arboreum; type=contig; length=559bpback to top |