g.arboreum_cottongen_reftransV1_0005690, g.arboreum_cottongen_reftransV1_0005690 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: M5X185_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006065mg PE=4 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 8.611e-72 Identity = 105/123 (85.37%), Postives = 115/123 (93.50%), Query Frame = -3 Query: 3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371 MSI+CG PL+EC+YCLAC RWAW RCLHTAGHDS TWG+ATAEEFEPVPRLCRYILAVYED++R PLWEPPGGYGI PDWLIL+KTYEDT+GQAP YILYLDH+HADIVLA RGLNLA+ESDY Sbjct: 1 MSILCGCPLIECVYCLACTRWAWKRCLHTAGHDSETWGIATAEEFEPVPRLCRYILAVYEDDLRQPLWEPPGGYGIKPDWLILKKTYEDTQGQAPPYILYLDHDHADIVLAFRGLNLARESDY 123
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A072VPF3_MEDTR (Calmodulin-binding heat-shock protein OS=Medicago truncatula GN=MTR_1g100950 PE=4 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 9.759e-72 Identity = 104/123 (84.55%), Postives = 115/123 (93.50%), Query Frame = -3 Query: 3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371 MSIICGLPL+EC+YCLAC RWAW RCLHTAGHDS TWG A +EFEPVPRLCRYILAVYED++R+PLW PPGGYGINPDWL+LRKTY+DTRG+AP YILYLDH+HADIVLAIRGLNLA+ESDY Sbjct: 1 MSIICGLPLVECVYCLACVRWAWKRCLHTAGHDSETWGFAATQEFEPVPRLCRYILAVYEDDLRNPLWAPPGGYGINPDWLLLRKTYKDTRGRAPPYILYLDHDHADIVLAIRGLNLARESDY 123
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: W9RZB8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006509 PE=4 SV=1) HSP 1 Score: 234.187 bits (596), Expect = 1.104e-71 Identity = 106/123 (86.18%), Postives = 115/123 (93.50%), Query Frame = -3 Query: 3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371 MSI+CG PLLEC+YCLACARWAW RCLHTAGHDS TWGLATAEEFEPVPRLCRYILAVYED+IR PLWEPP GYGINPDWL+L+K+YE+T+GQAP YILYLDH+H DIVLA RGLNLAKESDY Sbjct: 1 MSILCGFPLLECVYCLACARWAWKRCLHTAGHDSDTWGLATAEEFEPVPRLCRYILAVYEDDIRQPLWEPPEGYGINPDWLVLKKSYENTQGQAPPYILYLDHDHMDIVLAFRGLNLAKESDY 123
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: K7LDR3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 2.953e-71 Identity = 104/123 (84.55%), Postives = 115/123 (93.50%), Query Frame = -3 Query: 3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371 MSI+CGLPL+EC+YCLACARWAW RCLHTAGHDS WG ATAEEFEP+PRLCRYILAVYED++RHPLW PPGGYGI+PD L+L+KTYEDTRG+AP Y+LYLDHEH DIVLAIRGLNLAKESDY Sbjct: 1 MSILCGLPLVECVYCLACARWAWKRCLHTAGHDSENWGFATAEEFEPIPRLCRYILAVYEDDLRHPLWAPPGGYGISPDLLLLKKTYEDTRGRAPPYVLYLDHEHEDIVLAIRGLNLAKESDY 123
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A072VQH8_MEDTR (Calmodulin-binding heat-shock protein OS=Medicago truncatula GN=MTR_1g100950 PE=4 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 3.238e-71 Identity = 104/123 (84.55%), Postives = 115/123 (93.50%), Query Frame = -3 Query: 3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371 MSIICGLPL+EC+YCLAC RWAW RCLHTAGHDS TWG A +EFEPVPRLCRYILAVYED++R+PLW PPGGYGINPDWL+LRKTY+DTRG+AP YILYLDH+HADIVLAIRGLNLA+ESDY Sbjct: 1 MSIICGLPLVECVYCLACVRWAWKRCLHTAGHDSETWGFAATQEFEPVPRLCRYILAVYEDDLRNPLWAPPGGYGINPDWLLLRKTYKDTRGRAPPYILYLDHDHADIVLAIRGLNLARESDY 123 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0005690 ID=g.arboreum_cottongen_reftransV1_0005690; Name=g.arboreum_cottongen_reftransV1_0005690; organism=Gossypium arboreum; type=contig; length=559bpback to top |