g.arboreum_cottongen_reftransV1_0005690, g.arboreum_cottongen_reftransV1_0005690 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0005690
Unique Nameg.arboreum_cottongen_reftransV1_0005690
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length559
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0005690:1..559 .
Chr6:121161236..121162680 -
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: M5X185_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006065mg PE=4 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 8.611e-72
Identity = 105/123 (85.37%), Postives = 115/123 (93.50%), Query Frame = -3 
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSI+CG PL+EC+YCLAC RWAW RCLHTAGHDS TWG+ATAEEFEPVPRLCRYILAVYED++R PLWEPPGGYGI PDWLIL+KTYEDT+GQAP YILYLDH+HADIVLA RGLNLA+ESDY
Sbjct:    1 MSILCGCPLIECVYCLACTRWAWKRCLHTAGHDSETWGIATAEEFEPVPRLCRYILAVYEDDLRQPLWEPPGGYGIKPDWLILKKTYEDTQGQAPPYILYLDHDHADIVLAFRGLNLARESDY 123
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A072VPF3_MEDTR (Calmodulin-binding heat-shock protein OS=Medicago truncatula GN=MTR_1g100950 PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 9.759e-72
Identity = 104/123 (84.55%), Postives = 115/123 (93.50%), Query Frame = -3 
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSIICGLPL+EC+YCLAC RWAW RCLHTAGHDS TWG A  +EFEPVPRLCRYILAVYED++R+PLW PPGGYGINPDWL+LRKTY+DTRG+AP YILYLDH+HADIVLAIRGLNLA+ESDY
Sbjct:    1 MSIICGLPLVECVYCLACVRWAWKRCLHTAGHDSETWGFAATQEFEPVPRLCRYILAVYEDDLRNPLWAPPGGYGINPDWLLLRKTYKDTRGRAPPYILYLDHDHADIVLAIRGLNLARESDY 123
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: W9RZB8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006509 PE=4 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 1.104e-71
Identity = 106/123 (86.18%), Postives = 115/123 (93.50%), Query Frame = -3 
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSI+CG PLLEC+YCLACARWAW RCLHTAGHDS TWGLATAEEFEPVPRLCRYILAVYED+IR PLWEPP GYGINPDWL+L+K+YE+T+GQAP YILYLDH+H DIVLA RGLNLAKESDY
Sbjct:    1 MSILCGFPLLECVYCLACARWAWKRCLHTAGHDSDTWGLATAEEFEPVPRLCRYILAVYEDDIRQPLWEPPEGYGINPDWLVLKKSYENTQGQAPPYILYLDHDHMDIVLAFRGLNLAKESDY 123
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: K7LDR3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 2.953e-71
Identity = 104/123 (84.55%), Postives = 115/123 (93.50%), Query Frame = -3 
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSI+CGLPL+EC+YCLACARWAW RCLHTAGHDS  WG ATAEEFEP+PRLCRYILAVYED++RHPLW PPGGYGI+PD L+L+KTYEDTRG+AP Y+LYLDHEH DIVLAIRGLNLAKESDY
Sbjct:    1 MSILCGLPLVECVYCLACARWAWKRCLHTAGHDSENWGFATAEEFEPIPRLCRYILAVYEDDLRHPLWAPPGGYGISPDLLLLKKTYEDTRGRAPPYVLYLDHEHEDIVLAIRGLNLAKESDY 123
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A072VQH8_MEDTR (Calmodulin-binding heat-shock protein OS=Medicago truncatula GN=MTR_1g100950 PE=4 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 3.238e-71
Identity = 104/123 (84.55%), Postives = 115/123 (93.50%), Query Frame = -3 
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSIICGLPL+EC+YCLAC RWAW RCLHTAGHDS TWG A  +EFEPVPRLCRYILAVYED++R+PLW PPGGYGINPDWL+LRKTY+DTRG+AP YILYLDH+HADIVLAIRGLNLA+ESDY
Sbjct:    1 MSIICGLPLVECVYCLACVRWAWKRCLHTAGHDSETWGFAATQEFEPVPRLCRYILAVYEDDLRNPLWAPPGGYGINPDWLLLRKTYKDTRGRAPPYILYLDHDHADIVLAIRGLNLARESDY 123
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M5X185_PRUPE8.611e-7285.37Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A072VPF3_MEDTR9.759e-7284.55Calmodulin-binding heat-shock protein OS=Medicago ... [more]
W9RZB8_9ROSA1.104e-7186.18Uncharacterized protein OS=Morus notabilis GN=L484... [more]
K7LDR3_SOYBN2.953e-7184.55Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A072VQH8_MEDTR3.238e-7184.55Calmodulin-binding heat-shock protein OS=Medicago ... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0005690 ID=g.arboreum_cottongen_reftransV1_0005690; Name=g.arboreum_cottongen_reftransV1_0005690; organism=Gossypium arboreum; type=contig; length=559bp
TGGTAATCACTTTCTTTTGCCAAATTAAGACCTCTAATGGCAAGAACTAT
ATCGGCATGCTCGTGATCGAGGTATAGTATGTAAGAAGGAGCCTGTCCTC
GAGTGTCTTCGTAAGTTTTTCTGAGAATTAACCAATCAGGGTTGATCCCA
TATCCTCCAGGGGGTTCCCAAAGGGGATGCCGAATATTGTCCTCATAAAC
AGCTAGAATGTAGCGGCAAAGTCGAGGAACAGGCTCGAATTCTTCTGCGG
TTGCAAGACCCCATGTTACACTATCGTGGCCGGCGGTATGCAGGCATCGA
TTCCATGCCCATCGAGCACAAGCTAGGCAGTAAATACATTCTAGGAGTGG
GAGGCCACATATGATCGACATCGATGCCTACTCTCGGAGATCGACAATGT
AGAGCACGAATTTGCATGTAAATGGCCTGGAAAACAAGGGAAAGTATTCC
ACAGATAGAGTAAATGATGACTATAGAAAGAACTGCAACTCGAGGTGGCT
CATAAATTGATAGCTGTACAAAGAAACCGATCTGGGTCTCTCTAGCATTA
GGGTTTTCA
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