g.arboreum_cottongen_reftransV1_0005690, g.arboreum_cottongen_reftransV1_0005690 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0005690
Unique Nameg.arboreum_cottongen_reftransV1_0005690
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length559
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0005690:1..559 .
Chr6:121161236..121162680 -
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: B9I480_POPTR (Lipase class 3 family protein OS=Populus trichocarpa GN=POPTR_0012s13050g PE=4 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.909e-73
Identity = 107/123 (86.99%), Postives = 118/123 (95.93%), Query Frame = -3 
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSI+CG+PLLEC+YCLACARWAW RCLHTAGHDS TWGLATAEEFEP+PRLCRYILAVYED++RHPLWEPPGGYGI PDWLILR+TYEDT G+AP YILYLDH+HADIVLA+RGLNLA+ESDY
Sbjct:    1 MSILCGVPLLECVYCLACARWAWKRCLHTAGHDSETWGLATAEEFEPIPRLCRYILAVYEDDLRHPLWEPPGGYGIKPDWLILRRTYEDTHGRAPPYILYLDHDHADIVLAVRGLNLARESDY 123
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A067JEM5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26093 PE=4 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 2.264e-73
Identity = 109/123 (88.62%), Postives = 118/123 (95.93%), Query Frame = -3 
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSIICGLPLLEC+YCLACARWAW RCLH+AGHDS TWGLATAEEFEPVPRLCRYILAVYED++R+P WEPPGGYGINPDW+ILRKTYEDT G+AP YILYLDH+H+DIVLAIRGLNLAKESDY
Sbjct:    1 MSIICGLPLLECVYCLACARWAWKRCLHSAGHDSETWGLATAEEFEPVPRLCRYILAVYEDDLRNPQWEPPGGYGINPDWVILRKTYEDTHGRAPPYILYLDHDHSDIVLAIRGLNLAKESDY 123
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A0B0MXL6_GOSAR (Sn1-specific diacylglycerol lipase alpha OS=Gossypium arboreum GN=F383_31641 PE=4 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 3.089e-73
Identity = 109/123 (88.62%), Postives = 119/123 (96.75%), Query Frame = -3 
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSIICG+PLLEC+YCLACARWAW RCLHTAGHDS TWGLATAEEFEPVPRLCRYILAVYE+++RHPL+EPPGGYGINPDWLILRKTYE+T+G AP YIL+LDH+HADIVLAIRGLNLAKESDY
Sbjct:    1 MSIICGVPLLECVYCLACARWAWKRCLHTAGHDSETWGLATAEEFEPVPRLCRYILAVYEEDLRHPLFEPPGGYGINPDWLILRKTYENTQGHAPPYILFLDHDHADIVLAIRGLNLAKESDY 123
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: G7IAL4_MEDTR (Calmodulin-binding heat-shock protein OS=Medicago truncatula GN=MTR_1g100950 PE=4 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 3.784e-73
Identity = 110/140 (78.57%), Postives = 124/140 (88.57%), Query Frame = -3 
Query:    3 CKFVLY--IVDLRE*ASMSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 416
            C FV+   +VD R   +MSIICGLPL+EC+YCLAC RWAW RCLHTAGHDS TWG A  +EFEPVPRLCRYILAVYED++R+PLW PPGGYGINPDWL+LRKTY+DTRG+AP YILYLDH+HADIVLAIRGLNLA+ESDY
Sbjct:   25 CFFVVSASVVDGRS-VTMSIICGLPLVECVYCLACVRWAWKRCLHTAGHDSETWGFAATQEFEPVPRLCRYILAVYEDDLRNPLWAPPGGYGINPDWLLLRKTYKDTRGRAPPYILYLDHDHADIVLAIRGLNLARESDY 163
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A067ELB3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013118mg PE=4 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 5.203e-73
Identity = 108/123 (87.80%), Postives = 118/123 (95.93%), Query Frame = -3 
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSI+CG+PLLEC+YCLACARWAW RCLHTAGHDS TWGLATAEEFEPVPR+CRYILAVYED++R+PLW PPGGYGINPDWL+LRKTYEDT G+AP YILYLDH+HADIVLAIRGLNLAKESDY
Sbjct:    1 MSILCGIPLLECVYCLACARWAWKRCLHTAGHDSETWGLATAEEFEPVPRMCRYILAVYEDDLRNPLWAPPGGYGINPDWLLLRKTYEDTGGRAPPYILYLDHDHADIVLAIRGLNLAKESDY 123
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: V4RLW6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004957mg PE=4 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 5.203e-73
Identity = 108/123 (87.80%), Postives = 118/123 (95.93%), Query Frame = -3 
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSI+CG+PLLEC+YCLACARWAW RCLHTAGHDS TWGLATAEEFEPVPR+CRYILAVYED++R+PLW PPGGYGINPDWL+LRKTYEDT G+AP YILYLDH+HADIVLAIRGLNLAKESDY
Sbjct:    1 MSILCGIPLLECVYCLACARWAWKRCLHTAGHDSETWGLATAEEFEPVPRMCRYILAVYEDDLRNPLWAPPGGYGINPDWLLLRKTYEDTGGRAPPYILYLDHDHADIVLAIRGLNLAKESDY 123
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A072VNU5_MEDTR (Calmodulin-binding heat-shock protein OS=Medicago truncatula GN=MTR_1g100950 PE=4 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 8.674e-73
Identity = 104/123 (84.55%), Postives = 115/123 (93.50%), Query Frame = -3 
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSIICGLPL+EC+YCLAC RWAW RCLHTAGHDS TWG A  +EFEPVPRLCRYILAVYED++R+PLW PPGGYGINPDWL+LRKTY+DTRG+AP YILYLDH+HADIVLAIRGLNLA+ESDY
Sbjct:    1 MSIICGLPLVECVYCLACVRWAWKRCLHTAGHDSETWGFAATQEFEPVPRLCRYILAVYEDDLRNPLWAPPGGYGINPDWLLLRKTYKDTRGRAPPYILYLDHDHADIVLAIRGLNLARESDY 123
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: I1LDP8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 6.188e-72
Identity = 106/123 (86.18%), Postives = 117/123 (95.12%), Query Frame = -3 
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSI+CG+PLLEC+YCLACARWAW RC++TAGHDS TWGLAT EEFEPVPRLCRYILAVYED+IRHPLWEPPGGYGI PDWLIL+K YEDT+G+AP Y+LYLDH+HADIVLAIRGLNLAKESDY
Sbjct:    1 MSILCGVPLLECVYCLACARWAWKRCIYTAGHDSETWGLATVEEFEPVPRLCRYILAVYEDDIRHPLWEPPGGYGIIPDWLILKKAYEDTQGRAPPYMLYLDHDHADIVLAIRGLNLAKESDY 123
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: B9RIW9_RICCO (Calmodulin-binding heat-shock protein, putative OS=Ricinus communis GN=RCOM_1583280 PE=4 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 6.236e-72
Identity = 106/123 (86.18%), Postives = 117/123 (95.12%), Query Frame = -3 
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSI+CGLPL+EC+YCLACARWAW RCLH+AGHDS TWGLATAEEFEPVPRLCRYILAVYED++R PLWEPPGGYGI+PDW+IL+K YEDT G+AP YILYLDH+HADIVLAIRGLNLAKESDY
Sbjct:    1 MSILCGLPLVECVYCLACARWAWKRCLHSAGHDSETWGLATAEEFEPVPRLCRYILAVYEDDLRQPLWEPPGGYGIHPDWVILKKNYEDTLGRAPPYILYLDHDHADIVLAIRGLNLAKESDY 123
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A0B2QK34_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_027645 PE=4 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 7.065e-72
Identity = 106/123 (86.18%), Postives = 117/123 (95.12%), Query Frame = -3 
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSI+CG+PLLEC+YCLACARWAW RC++TAGHDS TWGLAT EEFEPVPRLCRYILAVYED+IRHPLWEPPGGYGI PDWLIL+K YEDT+G+AP Y+LYLDH+HADIVLAIRGLNLAKESDY
Sbjct:    1 MSILCGVPLLECVYCLACARWAWKRCIYTAGHDSETWGLATVEEFEPVPRLCRYILAVYEDDIRHPLWEPPGGYGIIPDWLILKKAYEDTQGRAPPYMLYLDHDHADIVLAIRGLNLAKESDY 123
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
B9I480_POPTR1.909e-7386.99Lipase class 3 family protein OS=Populus trichocar... [more]
A0A067JEM5_JATCU2.264e-7388.62Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A0B0MXL6_GOSAR3.089e-7388.62Sn1-specific diacylglycerol lipase alpha OS=Gossyp... [more]
G7IAL4_MEDTR3.784e-7378.57Calmodulin-binding heat-shock protein OS=Medicago ... [more]
A0A067ELB3_CITSI5.203e-7387.80Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4RLW6_9ROSI5.203e-7387.80Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A072VNU5_MEDTR8.674e-7384.55Calmodulin-binding heat-shock protein OS=Medicago ... [more]
I1LDP8_SOYBN6.188e-7286.18Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
B9RIW9_RICCO6.236e-7286.18Calmodulin-binding heat-shock protein, putative OS... [more]
A0A0B2QK34_GLYSO7.065e-7286.18Uncharacterized protein OS=Glycine soja GN=glysoja... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0005690 ID=g.arboreum_cottongen_reftransV1_0005690; Name=g.arboreum_cottongen_reftransV1_0005690; organism=Gossypium arboreum; type=contig; length=559bp
TGGTAATCACTTTCTTTTGCCAAATTAAGACCTCTAATGGCAAGAACTAT
ATCGGCATGCTCGTGATCGAGGTATAGTATGTAAGAAGGAGCCTGTCCTC
GAGTGTCTTCGTAAGTTTTTCTGAGAATTAACCAATCAGGGTTGATCCCA
TATCCTCCAGGGGGTTCCCAAAGGGGATGCCGAATATTGTCCTCATAAAC
AGCTAGAATGTAGCGGCAAAGTCGAGGAACAGGCTCGAATTCTTCTGCGG
TTGCAAGACCCCATGTTACACTATCGTGGCCGGCGGTATGCAGGCATCGA
TTCCATGCCCATCGAGCACAAGCTAGGCAGTAAATACATTCTAGGAGTGG
GAGGCCACATATGATCGACATCGATGCCTACTCTCGGAGATCGACAATGT
AGAGCACGAATTTGCATGTAAATGGCCTGGAAAACAAGGGAAAGTATTCC
ACAGATAGAGTAAATGATGACTATAGAAAGAACTGCAACTCGAGGTGGCT
CATAAATTGATAGCTGTACAAAGAAACCGATCTGGGTCTCTCTAGCATTA
GGGTTTTCA
back to top