g.arboreum_cottongen_reftransV1_0002348, g.arboreum_cottongen_reftransV1_0002348 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: A0A0B0NN27_GOSAR (Deneddylase ORF24 OS=Gossypium arboreum GN=F383_19254 PE=4 SV=1) HSP 1 Score: 518.079 bits (1333), Expect = 4.335e-177 Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVISSIIASGILLITISSISLFSFPYLGRGGKYLGKSRSPSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ Sbjct: 349 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVISSIIASGILLITISSISLFSFPYLGRGGKYLGKSRSPSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 621
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: A0A0D2R8J0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G157000 PE=4 SV=1) HSP 1 Score: 502.286 bits (1292), Expect = 6.846e-171 Identity = 264/273 (96.70%), Postives = 269/273 (98.53%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821 EGWRESN SRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVISSIIASGILLITIS+ISLFSFPYLGRGGKYLGKSRSPSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADV+K+DADIKSSVQDIA YQVVLSTEGKIVGFQPTSRVGVN WA+NPLTKELYGGKKLSPGLIEPRL+IQLPN IVVLELLMSVNPDSCFALARPIQ Sbjct: 348 EGWRESNESRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVISSIIASGILLITISTISLFSFPYLGRGGKYLGKSRSPSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVKKIDADIKSSVQDIASYQVVLSTEGKIVGFQPTSRVGVNHWAVNPLTKELYGGKKLSPGLIEPRLKIQLPNEIVVLELLMSVNPDSCFALARPIQ 620
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: A0A061GM10_THECC (F1K23.23, putative isoform 1 OS=Theobroma cacao GN=TCM_029783 PE=4 SV=1) HSP 1 Score: 406.757 bits (1044), Expect = 1.370e-133 Identity = 212/274 (77.37%), Postives = 247/274 (90.15%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSP-SSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821 EGW +S+ +RW+VLLTHSQMVGLADILD+YYEDVY+LP KQL G+VANYNSL+KAKR+SSF +++S+ +ASGILLITIS++S FSFP+L +GGKY G SRSP SSIIESTTIQSV AEKLE FC+LVIQKIKDAFGWPG+IATET++ AWIGE+P+ LK PHQANS++ED+S S ADV K+D DIKSSVQD+A YQV+LSTEGKIVGFQPTSRVGVN WA+NPL KELYGG+KLSPGLIE L+I+LPN IVV+ELLMSVNPDSCFALARPIQ Sbjct: 351 EGWIKSDENRWEVLLTHSQMVGLADILDLYYEDVYSLPNKQLRCGVVANYNSLSKAKRSSSFSRMVSATVASGILLITISTLSQFSFPHLHKGGKYPGGSRSPPSSIIESTTIQSVHAEKLEAFCILVIQKIKDAFGWPGDIATETDLSAWIGEMPNYLKVPHQANSSNEDDSASSADVGKIDDDIKSSVQDVASYQVILSTEGKIVGFQPTSRVGVNHWAVNPLAKELYGGRKLSPGLIERGLKIRLPNEIVVIELLMSVNPDSCFALARPIQ 624
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: V4U9P2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014636mg PE=4 SV=1) HSP 1 Score: 339.732 bits (870), Expect = 9.994e-108 Identity = 177/274 (64.60%), Postives = 218/274 (79.56%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRS-PSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821 EGWR+S +RW++LLTHSQMVGLADILDMYYED+++LP KQL G+V NY +L KR+SSFLK++S +ASGI L+ IS++ S P+L +G K+ G+ RS SS I + Q VDA KLE CV ++++IKD F WPG+I TE +IGAWIG+IP+ LK H+ +S SE N T A +EK+D DIKSS+QDIA YQVVLSTEGKIVGFQPTSRVGVN WA +PL KE+YGG+KLSPGLIEP L+I LPN +V++ELLMSVNPDSCFALARPIQ Sbjct: 340 EGWRKSAENRWEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCGVVTNYTNLPSKKRDSSFLKILSVTLASGIFLVAISALGQRSSPHLHKGEKFSGELRSLASSEIWNALRQPVDAVKLEEMCVSIVKRIKDTFDWPGDIMTEMSIGAWIGKIPNYLKLSHEDDSTSEGNLT--AALEKIDPDIKSSMQDIASYQVVLSTEGKIVGFQPTSRVGVNHWAASPLAKEMYGGRKLSPGLIEPSLKIHLPNEVVLIELLMSVNPDSCFALARPIQ 611
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: A0A067GR11_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007246mg PE=4 SV=1) HSP 1 Score: 339.732 bits (870), Expect = 1.010e-107 Identity = 178/274 (64.96%), Postives = 217/274 (79.20%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRS-PSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821 EGWR+S +RW++LLTHSQMVGLADILDMYYED+++LP KQL +V NY +L KR+SSFLK++S +ASGI L+ IS++ S P+L +G K+ G+ RS SS I + Q VDA KLE CV +I++IKD F WPG+I TE +IGAWIGEIP+ LK H+ +S SE N T A +EK+D DIKSS+QDIA YQVVLSTEGKIVGFQPTSRVGVN WA +PL KE+YGG+KLSPGLIEP L+I LPN +V++ELLMSVNPDSCFALARPIQ Sbjct: 340 EGWRKSAENRWEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCSVVTNYTNLPSKKRDSSFLKILSVTLASGIFLVAISALGQRSSPHLHKGEKFSGELRSLASSEIWNALRQPVDAVKLEEMCVSIIKRIKDTFDWPGDIMTEMSIGAWIGEIPNYLKLSHEDDSTSEGNLT--AALEKIDPDIKSSMQDIASYQVVLSTEGKIVGFQPTSRVGVNHWAASPLAKEMYGGRKLSPGLIEPSLKIHLPNEVVLIELLMSVNPDSCFALARPIQ 611
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: B9H2N7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s05040g PE=4 SV=2) HSP 1 Score: 326.635 bits (836), Expect = 2.281e-102 Identity = 162/274 (59.12%), Postives = 219/274 (79.93%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRS-PSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821 EGWRES+G+RW+VLLTHSQMVGLA+I DMYYED+YT+PK++L G+V+N+ +LT+ KR+SS + V+S + SGI L++IS++S F P+L +G Y ++ S PSS I+ +S+DA KL+ FC+L+ +K+KD+FGWPG+I T+ IGAWIGEIP+ K+ +A++ SE+NST ++K+DAD+KSS QDIA YQVVLST+GKIVGFQPTS VGVN WA NPL KELYGG+ LSPG IEP L+I PN ++++ELL+SVN D+ FALARP++ Sbjct: 358 EGWRESSGNRWEVLLTHSQMVGLAEIFDMYYEDIYTMPKEELSCGVVSNFTNLTRKKRSSSLMNVLSVTLVSGIFLVSISALSQFCLPHLRKGRMYAQENSSLPSSEIQFAVNESLDAAKLQEFCILICKKMKDSFGWPGDIVTDKKIGAWIGEIPAYFKSMDEADAASEENSTDSTPIQKIDADLKSSAQDIASYQVVLSTDGKIVGFQPTSGVGVNHWAANPLAKELYGGRNLSPGFIEPGLKIHFPNEVILIELLVSVNSDANFALARPVR 631
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: M5WTF7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003266mg PE=4 SV=1) HSP 1 Score: 311.997 bits (798), Expect = 3.420e-97 Identity = 163/274 (59.49%), Postives = 206/274 (75.18%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRS-PSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821 EGWR+S + +V LTHSQMVGLADI+DMYYED+YT+P KQL G+VAN +L+ K S L+++S +ASGI LITIS++ FPY +G KYL + RS PSS ++ QSVDA KLE FCV +++KIKDA GWPGEI ET++GAW G++P+ L+ + +SN ED ST + EK+D D+K+S QDIA YQVVLST+GKIVGFQP S V VN WA NPL KELY G+KLSPGL EP L++Q PN + V+ELLMSV PD+CFALARP++ Sbjct: 315 EGWRKSAENWCEVFLTHSQMVGLADIIDMYYEDLYTMPDKQLSCGVVANSTNLSNKKMGSFLLRMLSVTLASGIFLITISALGQLGFPYPHKGAKYLREDRSFPSSEVDGALYQSVDAVKLEAFCVSLVKKIKDALGWPGEIKMETDVGAWTGKVPNYLRMVVEDSSNREDMSTFSSSSEKIDEDLKASAQDIASYQVVLSTDGKIVGFQPLSSVAVNHWAANPLAKELYRGRKLSPGLTEPGLKVQRPNEVAVIELLMSVKPDACFALARPVR 588
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: A0A067JE38_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21499 PE=4 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 1.469e-91 Identity = 159/272 (58.46%), Postives = 200/272 (73.53%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSP-SSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARP 815 EGWR S +RW+VLLTHSQM GLA+ LDMYYED+Y+LP K+L + + + K SS LK++S +A+GI L+ IS++ FP L +G Y + SP SS IE +S+D EKL+ FCVLV++KIKD GWPG++ TE N GAWIGE+P LK +++SN E+NSTS A EK+D DIKS+ QDIA YQVVLST+GKI+GFQPTSR+GVN WA NPL KELYGG+KLSPG+ EP +I+LP IVV+ELLMS N D+CF LARP Sbjct: 556 EGWRRSADNRWEVLLTHSQMAGLAETLDMYYEDIYSLPDKELSCHSTTKFTNFSSKKVRSSLLKILSVGLATGIFLVAISALGHIFFPLLRKGEIYTQQLGSPPSSEIEYAINESLDNEKLQEFCVLVVKKIKDGCGWPGDVITEENNGAWIGEVPKYLKMMDKSDSNIEENSTS-ASSEKIDEDIKSAAQDIASYQVVLSTDGKIIGFQPTSRIGVNHWASNPLAKELYGGRKLSPGIFEPGHKIRLPKEIVVIELLMSANFDACFVLARP 826 HSP 2 Score: 78.5666 bits (192), Expect = 1.110e-12 Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFL 191 EGWR S +RW+VLLTHSQM GLA+ LDMYYED+Y+LP K+L + + + K +SF Sbjct: 355 EGWRRSADNRWEVLLTHSQMAGLAETLDMYYEDIYSLPDKELSCHSTTKFTNFSSKKVPASFF 417
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: B9S938_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1012200 PE=4 SV=1) HSP 1 Score: 297.745 bits (761), Expect = 2.462e-91 Identity = 159/264 (60.23%), Postives = 204/264 (77.27%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSP-SSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPD 791 EGWR +RW+VLLTHSQM GLA+ILDMY+EDVY+LP K+L AN+ +L K++SS+LK +S + SGI LI IS+ S F FP+L + Y + RSP SS IE + +S+ AEKL+ FC+L+++KIKDAFGWPG+I TET+ GAWIGEIP+ LKA + +S+ ED+STS +EK+D D+KSS QDIA YQVVLST+GKIVGFQPTSR+GVN WA NPL +ELY G+KLSPGL+EP L+I+ P+ IVV+ELLMS+ D Sbjct: 340 EGWRRFGDNRWEVLLTHSQMAGLAEILDMYFEDVYSLPHKELSCRATANFTNLANTKKSSSWLKFLSVSLISGIFLIAISAFSRFYFPHLHKQQTYNQEHRSPPSSEIEHSVNESLHAEKLQEFCILIVKKIKDAFGWPGDIITETSNGAWIGEIPNYLKAMGEYDSSKEDSSTS-DPIEKLDEDMKSSAQDIASYQVVLSTDGKIVGFQPTSRIGVNHWAANPLARELYAGRKLSPGLVEPGLKIRPPSEIVVIELLMSLWAD 602
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: F6HM53_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g00520 PE=4 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 1.632e-85 Identity = 153/277 (55.23%), Postives = 196/277 (70.76%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGM-VANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPS---SIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821 EGW+ S +RW+VLLTHSQMV LA+ILDMYYED+YTLP KQL G AN+ +L+K KR SS LK+++ IASGI L+ I+ + FP + GK G PS S I S++ K+E FC+ +++KIKDAFGW GEI E+++GAW G++P L+ +AN + ED S A +++ D + K+S QDIA YQVVLS +G IVGFQPTSRV VN WA+NPL KELY GKKLSPGL E L+I PN +V++ELLMSVN D+CFALARP+Q Sbjct: 351 EGWKRSAENRWEVLLTHSQMVALANILDMYYEDLYTLPDKQLLCGAGFANFTNLSKNKRISSLLKILTISIASGIFLVAINVLGRLYFPRVNEVGK--GPGNQPSLLPSEINCVQHNSLETTKMEAFCISIVKKIKDAFGWSGEIMAESSVGAWTGDLPIYLRV-DKANHSGEDISNGTALLQRSDEEKKTSTQDIASYQVVLSVDGDIVGFQPTSRVAVNNWAVNPLAKELYKGKKLSPGLFETGLKIPRPNEVVIIELLMSVNSDACFALARPVQ 624 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to top
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0002348 ID=g.arboreum_cottongen_reftransV1_0002348; Name=g.arboreum_cottongen_reftransV1_0002348; organism=Gossypium arboreum; type=contig; length=1055bpback to top |