g.arboreum_cottongen_reftransV1_0002348, g.arboreum_cottongen_reftransV1_0002348 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0002348
Unique Nameg.arboreum_cottongen_reftransV1_0002348
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1055
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0002348:1..1054 .
Chr11:26940035..26943174 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: M4D310_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra010863 PE=4 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 5.514e-75
Identity = 150/274 (54.74%), Postives = 191/274 (69.71%), Query Frame = 3
Query:    3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPS-SIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEI-QLPNGIVVLELLMSVNPDSCFALARPI 818
            EGWR+S+ ++W+VLLTHSQMVGLA+ LD+Y+ED+Y+LP+KQL      NY +L   KR  S LK+IS  +ASGILL+ +S+ + FS P      KY GK +  S S  E  + QS D  +LE+FC L++ K+KDA+ W GEI  E  IGAWIGE+P  LK   +A    E   TS + +EK++ D K+S Q IA YQVVLS+EGKI+GFQPTSRV VN W+ NPL KELY G+KLSPGLIE  L+  + P  +VVLELLMSVN D  FAL RP+
Sbjct:  345 EGWRKSSENKWEVLLTHSQMVGLAEALDVYFEDIYSLPRKQLPCDAFGNYGNLPSEKRGLSLLKMISVTVASGILLLAVSAAAQFSIPQKSER-KYPGKRQDVSWSESELLSHQSSDTSELESFCGLLVNKLKDAYSWVGEITVENRIGAWIGEVPDYLKETSRAK---EHIGTSSSLLEKLNEDAKASAQAIATYQVVLSSEGKIIGFQPTSRVAVNHWSANPLAKELYSGRKLSPGLIERGLKSGRPPTKVVVLELLMSVNSDRPFALDRPL 614          
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: V4KRU8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10007091mg PE=4 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.731e-74
Identity = 145/273 (53.11%), Postives = 192/273 (70.33%), Query Frame = 3
Query:    3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPS-SIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPI 818
            EGWR+S+ ++W+VLLTHSQMVGLA+ LD+Y+ED Y+LP+KQL      +Y +L   KR  S LK+IS  +ASGILL+ +S+ + F  P       Y GK +    S  E  + QS D+ +L++FC L++ K+KDA+ W GEI+ E++IGAWIGE+P  LK   +A S  +    S + ++K++ D K+S QDIA YQVVLS+EGKI+GFQPTSRV VN WA NPL KELY G+KLSPGLIEP L+   P  +VVLELLMSVN +  FAL RP+
Sbjct:  343 EGWRKSSENKWEVLLTHSQMVGLAEALDIYFEDTYSLPRKQLPCDGFGDYANLPSQKRGLSMLKMISVTMASGILLLAVSAAAQFCIPP-KTVRNYPGKRQDTLWSESELLSHQSSDSSELDSFCGLLVNKLKDAYCWVGEISLESSIGAWIGEVPDYLKEISRAKSVEDHIVRSSSLLDKLNEDAKASAQDIATYQVVLSSEGKIIGFQPTSRVAVNHWAANPLAKELYSGRKLSPGLIEPGLKSSPPTRVVVLELLMSVNSEHPFALVRPL 614          
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: G7IFH4_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g014890 PE=4 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 3.972e-74
Identity = 140/273 (51.28%), Postives = 184/273 (67.40%), Query Frame = 3
Query:    3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821
            +GW++S+ +RW+VLLTHSQMVGLA+ LDMYY D Y+LP K+L  G+ A Y +++  ++ SS  K++S  +ASG+ L+ IS++  F  P L +  K+  + RS  +   +     +D  K+E FCV  + K+K+A+GW  EI  E  IGAWIGE+P  L+         E   T     E +DAD K S+QDIA YQVV S+EGKIVGFQP SRV VNQWA NPL KELYGGKKLSPG++EP L I LP  + V+ELL+SV PD+ FALARP Q
Sbjct:  351 QGWKKSSENRWEVLLTHSQMVGLAETLDMYYVDPYSLPDKELSYGVAAKYANVSN-RKGSSLSKILSVSLASGMFLVAISALGQFCLPRLSKERKHTVEHRSLLTSEVNVMHDFLDTTKVEEFCVSAVAKLKNAYGWSDEIKVEDGIGAWIGELPVYLRG--------EGVDTLSTSSEDIDADAKVSMQDIASYQVVFSSEGKIVGFQPLSRVAVNQWADNPLAKELYGGKKLSPGIVEPGLRIHLPKEVTVVELLVSVKPDAYFALARPYQ 614          
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: A0A078HE89_BRANA (BnaC03g58750D protein OS=Brassica napus GN=BnaC03g58750D PE=4 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 8.408e-74
Identity = 147/275 (53.45%), Postives = 194/275 (70.55%), Query Frame = 3
Query:    3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPS-SIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGY-QVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEI-QLPNGIVVLELLMSVNPDSCFALARPI 818
            EGWR+S+ ++W+VLLTHSQMVGLA+ LD+Y+ED+Y+LP+KQL      NY +L   KR  S LK+IS  +ASGILL+ +S+ + FS P      KY GK +  S S  E  + QS D  +LE+FC LV+ K+KDA+ W GEI  E++IGAWIGE+P  LK   +  +  ++  T  + +EK++ D K+S Q+IA Y QVVLS+EG+I+GFQPTSRV VN W+ NPL KELY G+KLSPGLIE  L+  + P  +VVLELLMSVN D  FAL RP+
Sbjct:  344 EGWRKSSENKWEVLLTHSQMVGLAEALDIYFEDIYSLPRKQLPCDAFGNYANLPSEKRGLSLLKMISVTVASGILLLAVSAAAQFSTPQKSER-KYPGKRQDISWSESELLSHQSSDTSELESFCGLVVNKLKDAYSWVGEITEESSIGAWIGEVPDYLKETSRGKATEDNVGTGSSLLEKLNEDAKASAQEIATYQQVVLSSEGEIIGFQPTSRVAVNHWSANPLAKELYRGRKLSPGLIERGLKSGRPPTKVVVLELLMSVNSDRPFALVRPL 617          
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: V7BSS2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G180500g PE=4 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 1.450e-73
Identity = 142/275 (51.64%), Postives = 184/275 (66.91%), Query Frame = 3
Query:    3 EGWRESNGS-RWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRS-PSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821
            EGW++S G+ RW+VLLTHSQMV LA+ LD+YY D Y+LP KQL  G  A +  +   KR +SF K++S  +ASGI L+ IS++  F  P+L +  K   + RS PSS ++ +    +DA KL  +CVL I K+K+ FGW  EI  E + G WIGE+P+ L+         ED  T     E ++AD K  +QDIA YQVV S+EGKIVGFQP SRV VN WA NPL KELY GKKLSPG+IEP L++  P  ++V+ELLMS NPD+ FALARP +
Sbjct:  342 EGWKKSAGNNRWEVLLTHSQMVQLAETLDIYYVDPYSLPDKQLSCGEAAKFAHVPN-KRGNSFPKLLSVTLASGIFLVAISALGQFCLPWLCKERKQSVEHRSLPSSHVKVSMHDFLDATKLGEYCVLAITKVKNTFGWSDEIKVEDDFGVWIGELPAYLRV--------EDADTLSTSSENINADAKVPIQDIASYQVVFSSEGKIVGFQPLSRVAVNHWAANPLAKELYRGKKLSPGIIEPGLKVSFPEKVIVVELLMSTNPDAYFALARPFR 607          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M4D310_BRARP5.514e-7554.74Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
V4KRU8_EUTSA1.731e-7453.11Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
G7IFH4_MEDTR3.972e-7451.28Uncharacterized protein OS=Medicago truncatula GN=... [more]
A0A078HE89_BRANA8.408e-7453.45BnaC03g58750D protein OS=Brassica napus GN=BnaC03g... [more]
V7BSS2_PHAVU1.450e-7351.64Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35694:SF1SUBFAMILY NOT NAMEDcoord: 1..259
NoneNo IPR availablePANTHERPTHR35694FAMILY NOT NAMEDcoord: 1..259
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 78..259
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..77
NoneNo IPR availableTMHMMTMhelixcoord: 51..73

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0002348 ID=g.arboreum_cottongen_reftransV1_0002348; Name=g.arboreum_cottongen_reftransV1_0002348; organism=Gossypium arboreum; type=contig; length=1055bp
TTGAAGGATGGAGAGAATCTAACGGGAGTAGGTGGCAAGTTCTTTTGACA
CACTCCCAAATGGTTGGATTGGCTGATATATTAGATATGTACTATGAAGA
TGTTTACACACTGCCCAAGAAACAACTACACAGTGGCATGGTTGCCAATT
ACAACAGCTTGACCAAAGCAAAGAGGAACTCTTCTTTCTTGAAAGTAATA
TCTTCCATCATTGCAAGTGGAATTCTTCTCATTACCATCAGTAGTATCAG
TCTATTTAGTTTTCCTTATCTAGGCAGAGGAGGGAAGTACCTTGGAAAAT
CTCGGTCTCCATCATCAATTATTGAGTCTACAACAATTCAATCTGTAGAT
GCTGAAAAGTTGGAGACATTTTGTGTACTGGTAATCCAAAAGATTAAGGA
TGCTTTTGGCTGGCCTGGTGAAATAGCAACAGAAACCAATATTGGTGCCT
GGATTGGTGAAATACCAAGCTGTCTAAAAGCACCTCATCAAGCTAATTCT
AATAGTGAGGACAATTCAACTAGTTTTGCTGATGTGGAGAAAATGGATGC
TGATATAAAATCATCTGTCCAGGATATTGCTGGTTATCAGGTGGTTTTAT
CAACTGAAGGAAAAATAGTTGGGTTCCAACCTACAAGTCGGGTGGGTGTC
AATCAGTGGGCTTTGAATCCCTTAACAAAAGAGCTATATGGTGGGAAAAA
ACTTTCCCCTGGTTTAATTGAACCTCGTCTCGAAATCCAACTTCCTAATG
GGATTGTTGTACTTGAGCTGTTGATGTCAGTTAACCCAGATTCCTGCTTT
GCATTGGCTAGGCCAATCCAATGATCATTGCTTGGTTTGATTTTAAAGAG
TTAATTGTAATAAAGTCAATGGCATCAATAATCCAGGTCCTTTTCTTTTC
CTTTCATTTTTTTTATTAGCTATTTTGGTTGAAGTTGGAAAACGTGTAAA
GGTACATCTCCAATGAGATTTCATTGGGTGCAGTCTCATTCATATACGTT
TATAATATGTAGAATGTTCTAGCCTTTAGCCATGTTTACAAATGTATGAG
AATGA
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