g.arboreum_cottongen_reftransV1_0002348, g.arboreum_cottongen_reftransV1_0002348 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: M4D310_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra010863 PE=4 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 5.514e-75 Identity = 150/274 (54.74%), Postives = 191/274 (69.71%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPS-SIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEI-QLPNGIVVLELLMSVNPDSCFALARPI 818 EGWR+S+ ++W+VLLTHSQMVGLA+ LD+Y+ED+Y+LP+KQL NY +L KR S LK+IS +ASGILL+ +S+ + FS P KY GK + S S E + QS D +LE+FC L++ K+KDA+ W GEI E IGAWIGE+P LK +A E TS + +EK++ D K+S Q IA YQVVLS+EGKI+GFQPTSRV VN W+ NPL KELY G+KLSPGLIE L+ + P +VVLELLMSVN D FAL RP+ Sbjct: 345 EGWRKSSENKWEVLLTHSQMVGLAEALDVYFEDIYSLPRKQLPCDAFGNYGNLPSEKRGLSLLKMISVTVASGILLLAVSAAAQFSIPQKSER-KYPGKRQDVSWSESELLSHQSSDTSELESFCGLLVNKLKDAYSWVGEITVENRIGAWIGEVPDYLKETSRAK---EHIGTSSSLLEKLNEDAKASAQAIATYQVVLSSEGKIIGFQPTSRVAVNHWSANPLAKELYSGRKLSPGLIERGLKSGRPPTKVVVLELLMSVNSDRPFALDRPL 614
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: V4KRU8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10007091mg PE=4 SV=1) HSP 1 Score: 253.062 bits (645), Expect = 1.731e-74 Identity = 145/273 (53.11%), Postives = 192/273 (70.33%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPS-SIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPI 818 EGWR+S+ ++W+VLLTHSQMVGLA+ LD+Y+ED Y+LP+KQL +Y +L KR S LK+IS +ASGILL+ +S+ + F P Y GK + S E + QS D+ +L++FC L++ K+KDA+ W GEI+ E++IGAWIGE+P LK +A S + S + ++K++ D K+S QDIA YQVVLS+EGKI+GFQPTSRV VN WA NPL KELY G+KLSPGLIEP L+ P +VVLELLMSVN + FAL RP+ Sbjct: 343 EGWRKSSENKWEVLLTHSQMVGLAEALDIYFEDTYSLPRKQLPCDGFGDYANLPSQKRGLSMLKMISVTMASGILLLAVSAAAQFCIPP-KTVRNYPGKRQDTLWSESELLSHQSSDSSELDSFCGLLVNKLKDAYCWVGEISLESSIGAWIGEVPDYLKEISRAKSVEDHIVRSSSLLDKLNEDAKASAQDIATYQVVLSSEGKIIGFQPTSRVAVNHWAANPLAKELYSGRKLSPGLIEPGLKSSPPTRVVVLELLMSVNSEHPFALVRPL 614
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: G7IFH4_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g014890 PE=4 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 3.972e-74 Identity = 140/273 (51.28%), Postives = 184/273 (67.40%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821 +GW++S+ +RW+VLLTHSQMVGLA+ LDMYY D Y+LP K+L G+ A Y +++ ++ SS K++S +ASG+ L+ IS++ F P L + K+ + RS + + +D K+E FCV + K+K+A+GW EI E IGAWIGE+P L+ E T E +DAD K S+QDIA YQVV S+EGKIVGFQP SRV VNQWA NPL KELYGGKKLSPG++EP L I LP + V+ELL+SV PD+ FALARP Q Sbjct: 351 QGWKKSSENRWEVLLTHSQMVGLAETLDMYYVDPYSLPDKELSYGVAAKYANVSN-RKGSSLSKILSVSLASGMFLVAISALGQFCLPRLSKERKHTVEHRSLLTSEVNVMHDFLDTTKVEEFCVSAVAKLKNAYGWSDEIKVEDGIGAWIGELPVYLRG--------EGVDTLSTSSEDIDADAKVSMQDIASYQVVFSSEGKIVGFQPLSRVAVNQWADNPLAKELYGGKKLSPGIVEPGLRIHLPKEVTVVELLVSVKPDAYFALARPYQ 614
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: A0A078HE89_BRANA (BnaC03g58750D protein OS=Brassica napus GN=BnaC03g58750D PE=4 SV=1) HSP 1 Score: 251.521 bits (641), Expect = 8.408e-74 Identity = 147/275 (53.45%), Postives = 194/275 (70.55%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPS-SIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGY-QVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEI-QLPNGIVVLELLMSVNPDSCFALARPI 818 EGWR+S+ ++W+VLLTHSQMVGLA+ LD+Y+ED+Y+LP+KQL NY +L KR S LK+IS +ASGILL+ +S+ + FS P KY GK + S S E + QS D +LE+FC LV+ K+KDA+ W GEI E++IGAWIGE+P LK + + ++ T + +EK++ D K+S Q+IA Y QVVLS+EG+I+GFQPTSRV VN W+ NPL KELY G+KLSPGLIE L+ + P +VVLELLMSVN D FAL RP+ Sbjct: 344 EGWRKSSENKWEVLLTHSQMVGLAEALDIYFEDIYSLPRKQLPCDAFGNYANLPSEKRGLSLLKMISVTVASGILLLAVSAAAQFSTPQKSER-KYPGKRQDISWSESELLSHQSSDTSELESFCGLVVNKLKDAYSWVGEITEESSIGAWIGEVPDYLKETSRGKATEDNVGTGSSLLEKLNEDAKASAQEIATYQQVVLSSEGEIIGFQPTSRVAVNHWSANPLAKELYRGRKLSPGLIERGLKSGRPPTKVVVLELLMSVNSDRPFALVRPL 617
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: V7BSS2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G180500g PE=4 SV=1) HSP 1 Score: 250.366 bits (638), Expect = 1.450e-73 Identity = 142/275 (51.64%), Postives = 184/275 (66.91%), Query Frame = 3 Query: 3 EGWRESNGS-RWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRS-PSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821 EGW++S G+ RW+VLLTHSQMV LA+ LD+YY D Y+LP KQL G A + + KR +SF K++S +ASGI L+ IS++ F P+L + K + RS PSS ++ + +DA KL +CVL I K+K+ FGW EI E + G WIGE+P+ L+ ED T E ++AD K +QDIA YQVV S+EGKIVGFQP SRV VN WA NPL KELY GKKLSPG+IEP L++ P ++V+ELLMS NPD+ FALARP + Sbjct: 342 EGWKKSAGNNRWEVLLTHSQMVQLAETLDIYYVDPYSLPDKQLSCGEAAKFAHVPN-KRGNSFPKLLSVTLASGIFLVAISALGQFCLPWLCKERKQSVEHRSLPSSHVKVSMHDFLDATKLGEYCVLAITKVKNTFGWSDEIKVEDDFGVWIGELPAYLRV--------EDADTLSTSSENINADAKVPIQDIASYQVVFSSEGKIVGFQPLSRVAVNHWAANPLAKELYRGKKLSPGIIEPGLKVSFPEKVIVVELLMSTNPDAYFALARPFR 607 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0002348 ID=g.arboreum_cottongen_reftransV1_0002348; Name=g.arboreum_cottongen_reftransV1_0002348; organism=Gossypium arboreum; type=contig; length=1055bpback to top |