g.arboreum_cottongen_reftransV1_0002348, g.arboreum_cottongen_reftransV1_0002348 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: A0A087HRG8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G294300 PE=4 SV=1) HSP 1 Score: 273.092 bits (697), Expect = 4.341e-82 Identity = 152/276 (55.07%), Postives = 196/276 (71.01%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSR----SPSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPI 818 EGWR+S+ ++W+VLLTHSQMVGLA+ LDMY+ED+Y+LP+KQL NY L KR SFLK++S IASGILL+ + + + F FP + KY GK + S S+++ QS D+ +L++FC LV+ K+KDA+ W GEI E +IG WIGE+P LK +A S + TS + +EK++ D K+S QDIA YQVVLS+EGKI+GFQPTSRVGVN WA NPL KELYG +KLSPGLIEP L+ P +VVLELLMSVN + FAL RP+ Sbjct: 337 EGWRKSSENKWEVLLTHSQMVGLAEALDMYFEDIYSLPRKQLPCNYSGNYADLPNEKRGLSFLKLLSVTIASGILLLAVGAAAQFCFPQQSQR-KYPGKHQDVLWSESALLSH---QSSDSSELDSFCGLVVNKLKDAYCWEGEITLERSIGTWIGEVPEYLKETSRAKSGKDHIDTSSSLLEKLNEDAKASAQDIATYQVVLSSEGKIIGFQPTSRVGVNHWAANPLAKELYGRRKLSPGLIEPGLKSHPPTKVVVLELLMSVNSNRPFALVRPL 608
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: R0GP76_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10011901mg PE=4 SV=1) HSP 1 Score: 269.626 bits (688), Expect = 7.812e-81 Identity = 152/273 (55.68%), Postives = 197/273 (72.16%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPS-SIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPI 818 EGWR+S+ ++W+VLLTHSQMVGLA+ LD+Y+ED+Y+LPKKQL + NY +L KR S LK+IS +ASGILL+ +S+ + F FP KY G+S+ S E + QS D+ KL++FC L++ K+KDA+ W GEI E++IGAWIGE+P LK +A S + +S + +EK++ D K+S QDIA YQVVLS EGKI+GFQPTSRV VN WA NPL +ELY GKKLSPGLIEP L+ + P +VVLELLMSVN D FAL RP+ Sbjct: 335 EGWRKSSENKWEVLLTHSQMVGLAEALDIYFEDIYSLPKKQLPCDVSGNYANLPNEKRGLSLLKIISVTMASGILLLAVSAAAQFCFPQKSER-KYPGRSQDILWSENELLSHQSSDSSKLDSFCGLLVNKLKDAYCWVGEITLESSIGAWIGEVPDYLKETSRAKSVDDPIVSSSSLLEKLNEDAKASAQDIATYQVVLSPEGKIIGFQPTSRVAVNHWAANPLARELYEGKKLSPGLIEPGLKSRPPTKVVVLELLMSVNSDRPFALVRPL 606
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: D7KCX8_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_473074 PE=4 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 5.768e-80 Identity = 151/274 (55.11%), Postives = 194/274 (70.80%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPSSIIESTTI--QSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPI 818 EGWR+S+ ++W+VLLTHSQMVGLA+ LD+Y+ED+Y+LP+KQL + NY +L KR S LK IS +ASGILL+ +S+ + F P+ KY GK R +ES + QS D +L++FC L++ K+KDA+ W GEI E++IGAWIGE+P LK +A S + TS + +EK++ D K++ QDIA YQVVLS EGKI+GFQPTSRV VN WA NPL KELYGGKKL PGLIEP L+ P +VVLELLMSVN D FAL RP+ Sbjct: 342 EGWRKSSENKWEVLLTHSQMVGLAEALDIYFEDIYSLPRKQLPCDVPGNYANLPSEKRGLSLLKFISVTMASGILLLAVSAAAQFCLPHKSER-KYPGK-RQDILWLESELLSHQSSDFSELDSFCGLLVNKLKDAYSWVGEITLESSIGAWIGEVPDYLKETSRAKSVEDHIVTSSSLLEKLNEDAKAAAQDIATYQVVLSAEGKIIGFQPTSRVAVNHWAANPLAKELYGGKKLKPGLIEPGLKSHPPKKVVVLELLMSVNSDRPFALVRPL 613
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: W9S784_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015035 PE=4 SV=1) HSP 1 Score: 268.085 bits (684), Expect = 2.882e-79 Identity = 153/295 (51.86%), Postives = 195/295 (66.10%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQM-----------------------VGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPN-GIVVLELLMSVNPDSCFALARP 815 EGWR+S+ + W+VL THSQM VGLAD++DMYYED+YTLP K+L G V N+ +L KRNS LK++S +ASGI +I IS++ P+L G SS +ES QS+D +LE FC+ V+++IKDA GWPG+I E ++G W G +P L+ Q +S+SE ST+ E +DA+IK+S QDIA YQVVLS +GK+VGFQPTSRV VNQWA NPL KELYGG+ LSPGLIEP L + P+ GIVV+ELLMS PD+CFALARP Sbjct: 355 EGWRKSSDNMWEVLFTHSQMECSIGSLELSLILKLNGNVYDGEVGLADVIDMYYEDLYTLPNKELSCGFVRNFTNLPNKKRNSVLLKMLSITVASGIFIIAISALGQLCLPHLKVGNYIRESQSLSSSEVESLLHQSLDDAELEAFCISVVKRIKDALGWPGDITGERSVGVWTGILPEYLRLVVQNDSDSEGISTT-TPAESIDAEIKTSAQDIANYQVVLSLDGKLVGFQPTSRVAVNQWAGNPLAKELYGGRNLSPGLIEPGLNVHRPDGGIVVIELLMSTKPDACFALARP 648 HSP 2 Score: 110.153 bits (274), Expect = 4.946e-23 Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 3 Query: 612 KIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPN-GIVVLELLMSVNPDSCFALARP 815 K+VGFQPTSRV VNQWA NPL KELYGG+ LSPGLIEP L + P+ GIVV+ELLMS PD+CFALARP Sbjct: 649 KLVGFQPTSRVAVNQWAGNPLAKELYGGRNLSPGLIEPGLNVHRPDGGIVVIELLMSTKPDACFALARP 717
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: Q9SHP4_ARATH (F1K23.23 OS=Arabidopsis thaliana GN=At1g28530 PE=4 SV=2) HSP 1 Score: 261.536 bits (667), Expect = 9.853e-78 Identity = 147/273 (53.85%), Postives = 191/273 (69.96%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPS-SIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPI 818 EGWR+S+ ++W+VLLTHSQMVGLA+ LD+Y+ED Y+LP+KQL + NY +L K+ S LK IS +ASGI L+ +S+ + F P KY GK + S E + QS D+ +L++FC L++ K+KDA+ W GEI E++IGAWIGE+P LK +A S + TS + +E ++ D K+S QDIA YQVVLS+EGKI+GFQPTSRV VN WA NPL +ELYGGKKL PGLIEP L+ P +VVLELLMSVN D FAL RP+ Sbjct: 339 EGWRKSSENKWEVLLTHSQMVGLAEALDIYFEDTYSLPRKQLPCDVPGNYANLPNEKKGLSLLKFISVTMASGIFLLAVSAAAQFCLPQKSER-KYPGKRQEILWSESELLSHQSSDSSELDSFCGLLVNKLKDAYSWVGEITLESSIGAWIGEVPDYLKETSRAKSVEDHIVTSSSLLEILNEDAKASAQDIATYQVVLSSEGKIIGFQPTSRVAVNHWAANPLARELYGGKKLKPGLIEPGLKSHPPKKVVVLELLMSVNSDRPFALVRPL 610
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: Q84TH8_ARATH (Putative uncharacterized protein At1g28530 OS=Arabidopsis thaliana GN=At1g28530 PE=2 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 1.095e-77 Identity = 147/273 (53.85%), Postives = 191/273 (69.96%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPS-SIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPI 818 EGWR+S+ ++W+VLLTHSQMVGLA+ LD+Y+ED Y+LP+KQL + NY +L K+ S LK IS +ASGI L+ +S+ + F P KY GK + S E + QS D+ +L++FC L++ K+KDA+ W GEI E++IGAWIGE+P LK +A S + TS + +E ++ D K+S QDIA YQVVLS+EGKI+GFQPTSRV VN WA NPL +ELYGGKKL PGLIEP L+ P +VVLELLMSVN D FAL RP+ Sbjct: 340 EGWRKSSENKWEVLLTHSQMVGLAEALDIYFEDTYSLPRKQLPCDVPGNYANLPNEKKGLSLLKFISVTMASGIFLLAVSAAAQFCLPQKSER-KYPGKRQEILWSESELLSHQSSDSSELDSFCGLLVNKLKDAYSWVGEITLESSIGAWIGEVPDYLKETSRAKSVEDHIVTSSSLLEILNEDAKASAQDIATYQVVLSSEGKIIGFQPTSRVAVNHWAANPLARELYGGKKLKPGLIEPGLKSHPPKKVVVLELLMSVNSDRPFALVRPL 611
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: A0A0D3BIQ1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 260.381 bits (664), Expect = 3.069e-77 Identity = 149/274 (54.38%), Postives = 195/274 (71.17%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPS-SIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEI-QLPNGIVVLELLMSVNPDSCFALARPI 818 EGWR+S+ ++W+VLLTHSQMVGLA+ LD+Y+ED+Y+LP+KQL NY +L KR S LK+IS +ASGILL+ +S+ + FS P KY GK + S S E + QS D +LE+FC LV+ K+KDA+ W GEI E++IGAWIGE+P LK +A + ++ T + +EK++ D K+S Q+IA YQVVLS+EGKI+GFQPTSRV VN W+ NPL KELY G+KLSPGLIE L+ + P +VVLELLMSVN D FAL RP+ Sbjct: 344 EGWRKSSENKWEVLLTHSQMVGLAEALDIYFEDIYSLPRKQLPCDAFGNYANLPSEKRGLSLLKMISVTVASGILLLAVSAAAQFSIPQKSER-KYPGKRQDISWSESELLSHQSSDTSELESFCGLVVNKLKDAYSWVGEITVESSIGAWIGEVPDYLKETSRAKATEDNVGTGSSLLEKLNEDAKASAQEIATYQVVLSSEGKIIGFQPTSRVAVNHWSANPLAKELYRGRKLSPGLIERGLKSGRPPTKVVVLELLMSVNSDRPFALVRPL 616
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: A0A078DSJ3_BRANA (BnaA08g18260D protein OS=Brassica napus GN=BnaA08g18260D PE=4 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 1.851e-76 Identity = 150/275 (54.55%), Postives = 196/275 (71.27%), Query Frame = 3 Query: 3 EGWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRSPS-SIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGY-QVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEI-QLPNGIVVLELLMSVNPDSCFALARPI 818 EGWR+S+ ++W+VLLTHSQMVGLA+ LD+Y+ED+Y+LP+KQL NY +L KR S LK+IS +ASGILL+ +S+ + FS P KY GKS+ S S E + QS D +LE+FC LV+ K+KDA+ W GEI E++IGAWIGE+P LK +A + ++ T + +EK++ D K+S Q+IA Y QVVLS+EGKI+GFQPTSRV VN W+ NPL KELY G+KLSPGLIE L+ + P +VVLELLMSVN D FAL RP+ Sbjct: 346 EGWRKSSENKWEVLLTHSQMVGLAEALDIYFEDIYSLPRKQLPCDAFGNYGNLPNEKRGLSLLKMISVTVASGILLLAVSAAAQFSIPQKSER-KYPGKSQDISWSESELLSHQSSDTSELESFCGLVVNKLKDAYSWVGEITVESSIGAWIGEVPDYLKETSRAKATEDNVGTGSSLLEKLNEDAKASAQEIATYQQVVLSSEGKIIGFQPTSRVAVNHWSANPLAKELYSGRKLSPGLIERGLKSGRPPTKVVVLELLMSVNSDRPFALVRPL 619
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: A0A0B2RG65_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_042662 PE=4 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 1.781e-75 Identity = 140/273 (51.28%), Postives = 186/273 (68.13%), Query Frame = 3 Query: 6 GWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRS-PSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821 GW++S +RW+VLLTHSQMV LA+ LD+YY D Y+LP KQL G+ A + +++ K NS F K +S +ASGI L+ IS++ F P+L + K+ + RS PSS ++ D +KLE +CVL I K K FGW GEI E IG WIGE+P+ L+ + + + E +DAD K S+QDIA YQVV S+EGKIVGFQP SRV VN W++NPL +ELYGGKKLSP +IEP L++ LP ++V+ELLMS+NPD+ FALARP + Sbjct: 339 GWKKSAENRWEVLLTHSQMVQLAETLDIYYVDPYSLPNKQLSCGVAAKFANVSNKKGNS-FPKFLSLALASGIFLVAISALGQFCLPWLCKERKHSVEHRSLPSSEVDVAINDFFDTQKLEEYCVLAIAKAKGTFGWSGEIKVEDGIGVWIGELPAYLRG---------EGVDTLSTSENIDADAKVSIQDIASYQVVFSSEGKIVGFQPLSRVAVNHWSVNPLARELYGGKKLSPSIIEPGLKVSLPEKVIVVELLMSINPDAYFALARPFR 601
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Match: I1L9A2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 1.857e-75 Identity = 140/273 (51.28%), Postives = 186/273 (68.13%), Query Frame = 3 Query: 6 GWRESNGSRWQVLLTHSQMVGLADILDMYYEDVYTLPKKQLHSGMVANYNSLTKAKRNSSFLKVXXXXXXXXXXXXXXXXXXXXXFPYLGRGGKYLGKSRS-PSSIIESTTIQSVDAEKLETFCVLVIQKIKDAFGWPGEIATETNIGAWIGEIPSCLKAPHQANSNSEDNSTSFADVEKMDADIKSSVQDIAGYQVVLSTEGKIVGFQPTSRVGVNQWALNPLTKELYGGKKLSPGLIEPRLEIQLPNGIVVLELLMSVNPDSCFALARPIQ 821 GW++S +RW+VLLTHSQMV LA+ LD+YY D Y+LP KQL G+ A + +++ K NS F K +S +ASGI L+ IS++ F P+L + K+ + RS PSS ++ D +KLE +CVL I K K FGW GEI E IG WIGE+P+ L+ + + + E +DAD K S+QDIA YQVV S+EGKIVGFQP SRV VN W++NPL +ELYGGKKLSP +IEP L++ LP ++V+ELLMS+NPD+ FALARP + Sbjct: 345 GWKKSAENRWEVLLTHSQMVQLAETLDIYYVDPYSLPNKQLSCGVAAKFANVSNKKGNS-FPKFLSLALASGIFLVAISALGQFCLPWLCKERKHSVEHRSLPSSEVDVAINDFFDTQKLEEYCVLAIAKAKGTFGWSGEIKVEDGIGVWIGELPAYLRG---------EGVDTLSTSENIDADAKVSIQDIASYQVVFSSEGKIVGFQPLSRVAVNHWSVNPLARELYGGKKLSPSIIEPGLKVSLPEKVIVVELLMSINPDAYFALARPFR 607 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0002348 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0002348 ID=g.arboreum_cottongen_reftransV1_0002348; Name=g.arboreum_cottongen_reftransV1_0002348; organism=Gossypium arboreum; type=contig; length=1055bpback to top |