g.arboreum_cottongen_reftransV1_0008455, g.arboreum_cottongen_reftransV1_0008455 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0B0NBF1_GOSAR (Lysine-specific demethylase REF6-like protein OS=Gossypium arboreum GN=F383_14553 PE=4 SV=1) HSP 1 Score: 236.884 bits (603), Expect = 2.458e-70 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 3 Query: 3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395 NGHEPVSRSIVDHDSDSSDSEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR Sbjct: 704 NGHEPVSRSIVDHDSDSSDSEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR 834
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0D2RPX0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G185200 PE=4 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 1.504e-68 Identity = 128/131 (97.71%), Postives = 130/131 (99.24%), Query Frame = 3 Query: 3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395 NGHEPVSRSIVDHDSDSSDSEIFRVKRRSFLKVEKR+GNHTMAS SSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRND+ Sbjct: 703 NGHEPVSRSIVDHDSDSSDSEIFRVKRRSFLKVEKRSGNHTMASKSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDK 833
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0D2QN03_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G185200 PE=4 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 1.513e-68 Identity = 128/131 (97.71%), Postives = 130/131 (99.24%), Query Frame = 3 Query: 3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395 NGHEPVSRSIVDHDSDSSDSEIFRVKRRSFLKVEKR+GNHTMAS SSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRND+ Sbjct: 704 NGHEPVSRSIVDHDSDSSDSEIFRVKRRSFLKVEKRSGNHTMASKSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDK 834
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A061G6M3_THECC (Jumonji domain protein isoform 3 OS=Theobroma cacao GN=TCM_016586 PE=4 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 4.529e-43 Identity = 94/132 (71.21%), Postives = 104/132 (78.79%), Query Frame = 3 Query: 3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSN-LPISIKYKKLGNEEAMIRQREHHRNDR 395 N HEP SRS VD DSD SDSEIFRVKRRSFLK+EKRN N TM+S + EHQGLKRLKKLQHE R GQS S+ R DEP+RN N S+ KE+PEN +K+R+GR LPISIKYKKLGNEE M RQREH R DR Sbjct: 425 NVHEPESRSTVDQDSDGSDSEIFRVKRRSFLKIEKRNANDTMSSKNCEHQGLKRLKKLQHEGRCGQSTSSEGCRTDEPSRNINSTSDCKEAPENAVKERFGRGGALPISIKYKKLGNEETMSRQREHQRYDR 556
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A061G5V2_THECC (Jumonji domain protein isoform 2 OS=Theobroma cacao GN=TCM_016586 PE=4 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.547e-42 Identity = 94/132 (71.21%), Postives = 104/132 (78.79%), Query Frame = 3 Query: 3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSN-LPISIKYKKLGNEEAMIRQREHHRNDR 395 N HEP SRS VD DSD SDSEIFRVKRRSFLK+EKRN N TM+S + EHQGLKRLKKLQHE R GQS S+ R DEP+RN N S+ KE+PEN +K+R+GR LPISIKYKKLGNEE M RQREH R DR Sbjct: 703 NVHEPESRSTVDQDSDGSDSEIFRVKRRSFLKIEKRNANDTMSSKNCEHQGLKRLKKLQHEGRCGQSTSSEGCRTDEPSRNINSTSDCKEAPENAVKERFGRGGALPISIKYKKLGNEETMSRQREHQRYDR 834
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A061GDV3_THECC (Jumonji domain protein isoform 1 OS=Theobroma cacao GN=TCM_016586 PE=4 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.554e-42 Identity = 94/132 (71.21%), Postives = 104/132 (78.79%), Query Frame = 3 Query: 3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSN-LPISIKYKKLGNEEAMIRQREHHRNDR 395 N HEP SRS VD DSD SDSEIFRVKRRSFLK+EKRN N TM+S + EHQGLKRLKKLQHE R GQS S+ R DEP+RN N S+ KE+PEN +K+R+GR LPISIKYKKLGNEE M RQREH R DR Sbjct: 704 NVHEPESRSTVDQDSDGSDSEIFRVKRRSFLKIEKRNANDTMSSKNCEHQGLKRLKKLQHEGRCGQSTSSEGCRTDEPSRNINSTSDCKEAPENAVKERFGRGGALPISIKYKKLGNEETMSRQREHQRYDR 835
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0B0PWN1_GOSAR (Lysine-specific demethylase REF6-like protein OS=Gossypium arboreum GN=F383_12117 PE=4 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 2.775e-34 Identity = 90/136 (66.18%), Postives = 105/136 (77.21%), Query Frame = 3 Query: 3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMP--SDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNL--PISIKYKKLGNEEAM-IRQREHHRNDR 395 N H+PVSRSIVD +SDSSDS IFRVKR F KVEKR GN T++S +SEHQ KRLKKLQHE R G+ + S+C RNDEPNRNTN +S+ KE+ EN +KDR GR L PISIKYKK+G+E M R+REHHRNDR Sbjct: 611 NVHDPVSRSIVDENSDSSDSPIFRVKR-PFSKVEKRFGNDTISSKNSEHQAFKRLKKLQHEGRCGRPVAYESECCRNDEPNRNTNCSSDSKEALENAVKDRLGRGTLPIPISIKYKKMGSEAGMSSRRREHHRNDR 745
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: U5GS16_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s02020g PE=4 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 8.589e-34 Identity = 72/112 (64.29%), Postives = 84/112 (75.00%), Query Frame = 3 Query: 63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGR-SNLPISIKYKKLGNEEAMIRQREHHRNDR 395 EIFRVKRRS LKVEKR N +S + EHQGLKRLKKLQ E R GQ+ S+C R DE NR++ S+YKE+PE+ KDR+ R S +PISIK+KKL NEEAM RQRE HR DR Sbjct: 699 EIFRVKRRSSLKVEKRVVNDASSSKNYEHQGLKRLKKLQPEGRYGQTTSSECCRTDESNRSSTSGSDYKEAPESASKDRFARGSIIPISIKFKKLINEEAMSRQREQHRRDR 810
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0D2RKA3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G224500 PE=4 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 2.920e-31 Identity = 88/134 (65.67%), Postives = 102/134 (76.12%), Query Frame = 3 Query: 3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMP--SDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNL--PISIKYKKLGNEEAMIR-QREHHRN 389 N H+PVSRSIVD +SDSSDS IFRVKR F KVEKR GN T++S +SEHQG KRLKKLQHE R G+ + S+C RNDEPNRNTN +S+ K + EN +KDR GR L PISIKYKK+G+E M QREHHRN Sbjct: 686 NVHDPVSRSIVDENSDSSDSAIFRVKR-PFSKVEKRFGNDTISSKNSEHQGFKRLKKLQHEGRCGRPVAYGSECCRNDEPNRNTNCSSDSK-ALENAVKDRLGRGTLPIPISIKYKKMGSEAGMSSGQREHHRN 817
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0D2PZS9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G224500 PE=4 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 2.942e-31 Identity = 88/134 (65.67%), Postives = 102/134 (76.12%), Query Frame = 3 Query: 3 NGHEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMP--SDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNL--PISIKYKKLGNEEAMIR-QREHHRN 389 N H+PVSRSIVD +SDSSDS IFRVKR F KVEKR GN T++S +SEHQG KRLKKLQHE R G+ + S+C RNDEPNRNTN +S+ K + EN +KDR GR L PISIKYKK+G+E M QREHHRN Sbjct: 685 NVHDPVSRSIVDENSDSSDSAIFRVKR-PFSKVEKRFGNDTISSKNSEHQGFKRLKKLQHEGRCGRPVAYGSECCRNDEPNRNTNCSSDSK-ALENAVKDRLGRGTLPIPISIKYKKMGSEAGMSSGQREHHRN 816 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008455 ID=g.arboreum_cottongen_reftransV1_0008455; Name=g.arboreum_cottongen_reftransV1_0008455; organism=Gossypium arboreum; type=contig; length=396bpback to top |