g.arboreum_cottongen_reftransV1_0008455, g.arboreum_cottongen_reftransV1_0008455 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: K7LF38_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.971e-20 Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 3 Query: 63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSN-LPISIKYKKLGNEEAMIRQREHHRNDR 395 EIFRVKR S LK E+RN N + S +E QGLKRLKK+ E +SGQ P D SR++E + + A N+K + + +DR+ RSN +PISI+YKKLGNEE + Q +HH+ DR Sbjct: 717 EIFRVKRPSSLKAERRNMNDAVPSKHTEQQGLKRLKKILPEGKSGQ--PMDSSRSNESSYKYSHAVNHKGHADISSRDRFARSNGIPISIRYKKLGNEEISM-QGDHHQRDR 825
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0B2RWY9_GLYSO (Lysine-specific demethylase REF6 OS=Glycine soja GN=glysoja_014943 PE=4 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.235e-20 Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 3 Query: 63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSN-LPISIKYKKLGNEEAMIRQREHHRNDR 395 EIFRVKR S LK E+RN N + S +E QGLKRLKK+ E +SGQ P D SR++E + + A N+K + + +DR+ RSN +PISI+YKKLGNEE + Q +HH+ DR Sbjct: 751 EIFRVKRPSSLKAERRNMNDAVPSKHTEQQGLKRLKKILPEGKSGQ--PMDSSRSNESSYKYSHAVNHKGHADISSRDRFARSNGIPISIRYKKLGNEEISM-QGDHHQRDR 859
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: M5WEE7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001299mg PE=4 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 7.568e-20 Identity = 61/120 (50.83%), Postives = 74/120 (61.67%), Query Frame = 3 Query: 63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENT-LKDRYGR--------SNLPISIKYKKLGNEEAMIRQREHHRNDR 395 EIFRVKRRS LKV+KR+ N +S SE+QG KRLKKLQ E R G S+P E R S YK E+ ++ R+ R S +PISIK+KKL NEE++ RQREHHR DR Sbjct: 703 EIFRVKRRSSLKVDKRSVNDISSSKHSENQGFKRLKKLQAE-RCGPSVPQYSCSTGESTRFLT-TSTYKGVSESAPMEGRFSRGSTVVPRGSTVPISIKFKKLANEESVSRQREHHRKDR 820
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: W9R3C0_9ROSA (Lysine-specific demethylase REF6 OS=Morus notabilis GN=L484_017744 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.312e-18 Identity = 58/112 (51.79%), Postives = 70/112 (62.50%), Query Frame = 3 Query: 63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGR-SNLPISIKYKKLGNEEAMIRQREHHRNDR 395 EIFRVKRRS KV+KRN N S S+HQG KRLKK Q E R+G SDC R E N +N++ +PE L DR R S +PISIK+KKL ++ + RQRE R DR Sbjct: 1049 EIFRVKRRSTQKVDKRNTNDGKKSMHSDHQGFKRLKKFQPEGRTGGVTSSDCFRIVESNSKLT-TTNHR-APEIALADRSARGSTIPISIKFKKLTSDHDINRQREQPRKDR 1158
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0B2P6K4_GLYSO (Lysine-specific demethylase REF6 OS=Glycine soja GN=glysoja_024212 PE=4 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 6.039e-18 Identity = 56/112 (50.00%), Postives = 73/112 (65.18%), Query Frame = 3 Query: 63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSN-LPISIKYKKLGNEEAMIRQREHHRNDR 395 EIFRVKR S LK E+RN N M+S + QGLKRLKK+ E +SGQ P D SR++E + N+K E + +DR+ N +PISI+ KKLGNEE + QR+H+R DR Sbjct: 722 EIFRVKRPSSLKAERRNMNDAMSSKHTAQQGLKRLKKILPEGKSGQ--PMDFSRSNESSYKYGHPVNHKGHAEISSRDRFATGNGIPISIRCKKLGNEEISM-QRDHNRRDR 830 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008455 ID=g.arboreum_cottongen_reftransV1_0008455; Name=g.arboreum_cottongen_reftransV1_0008455; organism=Gossypium arboreum; type=contig; length=396bpback to top |