g.arboreum_cottongen_reftransV1_0008455, g.arboreum_cottongen_reftransV1_0008455 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008455
Unique Nameg.arboreum_cottongen_reftransV1_0008455
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length396
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeg.arboreum_cottongen_reftransV1_0008455:1..396 .
Chr10:112476502..112477509 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: K7LF38_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.971e-20
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 3
Query:   63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSN-LPISIKYKKLGNEEAMIRQREHHRNDR 395
            EIFRVKR S LK E+RN N  + S  +E QGLKRLKK+  E +SGQ  P D SR++E +   + A N+K   + + +DR+ RSN +PISI+YKKLGNEE  + Q +HH+ DR
Sbjct:  717 EIFRVKRPSSLKAERRNMNDAVPSKHTEQQGLKRLKKILPEGKSGQ--PMDSSRSNESSYKYSHAVNHKGHADISSRDRFARSNGIPISIRYKKLGNEEISM-QGDHHQRDR 825          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0B2RWY9_GLYSO (Lysine-specific demethylase REF6 OS=Glycine soja GN=glysoja_014943 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.235e-20
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 3
Query:   63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSN-LPISIKYKKLGNEEAMIRQREHHRNDR 395
            EIFRVKR S LK E+RN N  + S  +E QGLKRLKK+  E +SGQ  P D SR++E +   + A N+K   + + +DR+ RSN +PISI+YKKLGNEE  + Q +HH+ DR
Sbjct:  751 EIFRVKRPSSLKAERRNMNDAVPSKHTEQQGLKRLKKILPEGKSGQ--PMDSSRSNESSYKYSHAVNHKGHADISSRDRFARSNGIPISIRYKKLGNEEISM-QGDHHQRDR 859          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: M5WEE7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001299mg PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 7.568e-20
Identity = 61/120 (50.83%), Postives = 74/120 (61.67%), Query Frame = 3
Query:   63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENT-LKDRYGR--------SNLPISIKYKKLGNEEAMIRQREHHRNDR 395
            EIFRVKRRS LKV+KR+ N   +S  SE+QG KRLKKLQ E R G S+P       E  R     S YK   E+  ++ R+ R        S +PISIK+KKL NEE++ RQREHHR DR
Sbjct:  703 EIFRVKRRSSLKVDKRSVNDISSSKHSENQGFKRLKKLQAE-RCGPSVPQYSCSTGESTRFLT-TSTYKGVSESAPMEGRFSRGSTVVPRGSTVPISIKFKKLANEESVSRQREHHRKDR 820          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: W9R3C0_9ROSA (Lysine-specific demethylase REF6 OS=Morus notabilis GN=L484_017744 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.312e-18
Identity = 58/112 (51.79%), Postives = 70/112 (62.50%), Query Frame = 3
Query:   63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGR-SNLPISIKYKKLGNEEAMIRQREHHRNDR 395
            EIFRVKRRS  KV+KRN N    S  S+HQG KRLKK Q E R+G    SDC R  E N      +N++ +PE  L DR  R S +PISIK+KKL ++  + RQRE  R DR
Sbjct: 1049 EIFRVKRRSTQKVDKRNTNDGKKSMHSDHQGFKRLKKFQPEGRTGGVTSSDCFRIVESNSKLT-TTNHR-APEIALADRSARGSTIPISIKFKKLTSDHDINRQREQPRKDR 1158          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0B2P6K4_GLYSO (Lysine-specific demethylase REF6 OS=Glycine soja GN=glysoja_024212 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.039e-18
Identity = 56/112 (50.00%), Postives = 73/112 (65.18%), Query Frame = 3
Query:   63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSN-LPISIKYKKLGNEEAMIRQREHHRNDR 395
            EIFRVKR S LK E+RN N  M+S  +  QGLKRLKK+  E +SGQ  P D SR++E +       N+K   E + +DR+   N +PISI+ KKLGNEE  + QR+H+R DR
Sbjct:  722 EIFRVKRPSSLKAERRNMNDAMSSKHTAQQGLKRLKKILPEGKSGQ--PMDFSRSNESSYKYGHPVNHKGHAEISSRDRFATGNGIPISIRCKKLGNEEISM-QRDHNRRDR 830          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
K7LF38_SOYBN2.971e-2051.79Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2RWY9_GLYSO3.235e-2051.79Lysine-specific demethylase REF6 OS=Glycine soja G... [more]
M5WEE7_PRUPE7.568e-2050.83Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
W9R3C0_9ROSA1.312e-1851.79Lysine-specific demethylase REF6 OS=Morus notabili... [more]
A0A0B2P6K4_GLYSO6.039e-1850.00Lysine-specific demethylase REF6 OS=Glycine soja G... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008455 ID=g.arboreum_cottongen_reftransV1_0008455; Name=g.arboreum_cottongen_reftransV1_0008455; organism=Gossypium arboreum; type=contig; length=396bp
ATAATGGTCATGAACCAGTGAGTAGGTCTATAGTCGACCATGACAGTGAT
AGTTCTGATTCAGAGATATTTAGGGTTAAACGGCGTTCTTTTTTGAAGGT
TGAGAAAAGAAATGGCAACCACACCATGGCATCAAATAGCTCTGAACACC
AGGGGCTCAAGCGATTAAAGAAACTCCAACATGAAAAAAGAAGTGGGCAA
TCAATGCCATCTGATTGCTCTAGAAACGATGAACCAAATCGTAACACCAA
TCGTGCTTCTAATTACAAAGAATCCCCAGAGAACACTTTGAAGGACAGAT
ATGGAAGAAGCAACCTTCCCATCTCCATAAAGTACAAGAAATTGGGAAAT
GAGGAAGCAATGATTAGGCAACGAGAGCACCATAGAAACGACAGGT
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