g.arboreum_cottongen_reftransV1_0008455, g.arboreum_cottongen_reftransV1_0008455 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008455
Unique Nameg.arboreum_cottongen_reftransV1_0008455
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length396
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeg.arboreum_cottongen_reftransV1_0008455:1..396 .
Chr10:112476502..112477509 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: B9GZJ0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s09480g PE=4 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.248e-29
Identity = 70/113 (61.95%), Postives = 82/113 (72.57%), Query Frame = 3
Query:   63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNR-NTNRASNYKESPENTLKDRYGR-SNLPISIKYKKLGNEEAMIRQREHHRNDR 395
            EIFRVKRRS LKVEKR  N   +S +SEHQGLKRLKKLQHE R GQ+  S+  R DE N  +T+  S+YKE+PE   KDR  R S +P SIK+KKL ++E M RQREHHR DR
Sbjct:  724 EIFRVKRRSSLKVEKRVVNDAASSKNSEHQGLKRLKKLQHEGRYGQTTSSEYCRADESNHGSTSSNSDYKEAPECASKDRVARGSTIPFSIKFKKLTSKEEMGRQREHHRLDR 836          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0D2R714_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G182600 PE=4 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.078e-29
Identity = 81/129 (62.79%), Postives = 96/129 (74.42%), Query Frame = 3
Query:    9 HEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395
            HEPVSRS+VD DSD+SDSE+FRVKRRS  KVEKR+GN +M+S  S+HQGLKRLKK QHE + G+S+PS+  R DEP  N +        PEN +K R     LPISIKYKK GNEEAM RQRE HR++R
Sbjct:  663 HEPVSRSVVDRDSDNSDSEVFRVKRRS--KVEKRSGNDSMSSKKSDHQGLKRLKKHQHEGKCGKSLPSEGCRIDEPTHNID--------PENGMKGR-----LPISIKYKKSGNEEAMSRQREQHRDER 776          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0D2N083_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G182600 PE=4 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.189e-29
Identity = 81/129 (62.79%), Postives = 96/129 (74.42%), Query Frame = 3
Query:    9 HEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395
            HEPVSRS+VD DSD+SDSE+FRVKRRS  KVEKR+GN +M+S  S+HQGLKRLKK QHE + G+S+PS+  R DEP  N +        PEN +K R     LPISIKYKK GNEEAM RQRE HR++R
Sbjct:  664 HEPVSRSVVDRDSDNSDSEVFRVKRRS--KVEKRSGNDSMSSKKSDHQGLKRLKKHQHEGKCGKSLPSEGCRIDEPTHNID--------PENGMKGR-----LPISIKYKKSGNEEAMSRQREQHRDER 777          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0D2S1X7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G182600 PE=4 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.002e-28
Identity = 81/129 (62.79%), Postives = 96/129 (74.42%), Query Frame = 3
Query:    9 HEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395
            HEPVSRS+VD DSD+SDSE+FRVKRRS  KVEKR+GN +M+S  S+HQGLKRLKK QHE + G+S+PS+  R DEP  N +        PEN +K R     LPISIKYKK GNEEAM RQRE HR++R
Sbjct:  703 HEPVSRSVVDRDSDNSDSEVFRVKRRS--KVEKRSGNDSMSSKKSDHQGLKRLKKHQHEGKCGKSLPSEGCRIDEPTHNID--------PENGMKGR-----LPISIKYKKSGNEEAMSRQREQHRDER 816          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0D2QZY0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G182600 PE=4 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.009e-28
Identity = 81/129 (62.79%), Postives = 96/129 (74.42%), Query Frame = 3
Query:    9 HEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395
            HEPVSRS+VD DSD+SDSE+FRVKRRS  KVEKR+GN +M+S  S+HQGLKRLKK QHE + G+S+PS+  R DEP  N +        PEN +K R     LPISIKYKK GNEEAM RQRE HR++R
Sbjct:  702 HEPVSRSVVDRDSDNSDSEVFRVKRRS--KVEKRSGNDSMSSKKSDHQGLKRLKKHQHEGKCGKSLPSEGCRIDEPTHNID--------PENGMKGR-----LPISIKYKKSGNEEAMSRQREQHRDER 815          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: B9RZ08_RICCO (Transcription factor, putative OS=Ricinus communis GN=RCOM_1315610 PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.471e-27
Identity = 64/114 (56.14%), Postives = 80/114 (70.18%), Query Frame = 3
Query:   63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCS--RNDEPNRNTNRASNYKESPENTLKDRY-GRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395
            EIFRVKRRS LKV+KR  N  ++S +SEHQGLKRLKKLQ E R GQ     CS   +DE  RN    S+++E+PE+  +DR+ G S +PISIK+KKL  EEAM R R+H R D+
Sbjct:  630 EIFRVKRRSSLKVDKRTVNDNVSSKNSEHQGLKRLKKLQFEGRYGQISSECCSSQTDDETTRNLTSTSHFREAPESASRDRFAGASTIPISIKFKKLVKEEAMSRHRDHLRVDK 743          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A067K2E3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17120 PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.184e-26
Identity = 65/113 (57.52%), Postives = 79/113 (69.91%), Query Frame = 3
Query:   63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSR-NDEPNRNTNRASNYKESPENTLKDRYGR-SNLPISIKYKKLGNEEAMIRQREHHRNDR 395
            EIFRVKRRS LKVEKR      +S + E+QGLKRLKKLQ E R  Q+M S+ S+ +DE N N     + KE+PEN  +DR+ R S +PISIK+KK  N+EAM RQ EHHR DR
Sbjct:  726 EIFRVKRRSSLKVEKRVVTDNGSSKNCEYQGLKRLKKLQFEGRIAQTMSSEYSQTDDESNHNYTPTVHCKETPENGSRDRFARGSGIPISIKFKKWVNDEAMSRQPEHHRVDR 838          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: F6HT55_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01960 PE=4 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.456e-23
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:   63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPN-RNTNRASNYKESPENTLKDRY-GRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395
            EIFRVKRRS +KVEKRN N   +    +HQGLKRLKKLQ + R GQ   S+CS  +E N   ++ + + K S +N  +DR+   + +PISIK+KK+ NEEAM RQREHHR DR
Sbjct:  702 EIFRVKRRSSVKVEKRNANDASSVKHFDHQGLKRLKKLQPQGRCGQLTLSECSMTNEQNRSFSSSSHHSKRSTDNVPRDRFSAGTTMPISIKFKKMANEEAMSRQREHHRKDR 814          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A067EHE6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042974mg PE=4 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.722e-23
Identity = 61/113 (53.98%), Postives = 77/113 (68.14%), Query Frame = 3
Query:   63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSN--LPISIKYKKLGNEEAMIRQREHHRNDR 395
            EIFRVKRR   KV+KR  N   +S  +EHQGLKRLKKLQ E R GQ M ++  R DE N  ++  SNYKE+ E   KDR+ R    +PISIK+KKL +EEA+ RQ+E+ R +R
Sbjct:  674 EIFRVKRRP-SKVDKRCMNDVTSSTHTEHQGLKRLKKLQPEGRCGQLMLTEFRRTDESNHKSSHTSNYKETSERGSKDRFARVGGAVPISIKFKKLADEEAISRQQENCRKER 785          
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: V4V2C1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000262mg PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.148e-22
Identity = 61/113 (53.98%), Postives = 76/113 (67.26%), Query Frame = 3
Query:   63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSN--LPISIKYKKLGNEEAMIRQREHHRNDR 395
            EIFRVKRR   KV+KR  N   +S  +EHQGLKRLKKLQ E R GQ M ++  R DE N  ++  SNYKE+ E   KDR+ R    +PISIK+KKL +EEA  RQ+E+ R +R
Sbjct:  701 EIFRVKRRP-SKVDKRCMNDVTSSTHTEHQGLKRLKKLQPEGRCGQLMLTEFRRTDESNHKSSHTSNYKETSERGSKDRFARVGGAVPISIKFKKLADEEANSRQQENCRKER 812          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
B9GZJ0_POPTR2.248e-2961.95Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A0D2R714_GOSRA9.078e-2962.79Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2N083_GOSRA9.189e-2962.79Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2S1X7_GOSRA1.002e-2862.79Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QZY0_GOSRA1.009e-2862.79Uncharacterized protein OS=Gossypium raimondii GN=... [more]
B9RZ08_RICCO2.471e-2756.14Transcription factor, putative OS=Ricinus communis... [more]
A0A067K2E3_JATCU5.184e-2657.52Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
F6HT55_VITVI1.456e-2353.98Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A067EHE6_CITSI1.722e-2353.98Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4V2C1_9ROSI1.148e-2253.98Uncharacterized protein OS=Citrus clementina GN=CI... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008455 ID=g.arboreum_cottongen_reftransV1_0008455; Name=g.arboreum_cottongen_reftransV1_0008455; organism=Gossypium arboreum; type=contig; length=396bp
ATAATGGTCATGAACCAGTGAGTAGGTCTATAGTCGACCATGACAGTGAT
AGTTCTGATTCAGAGATATTTAGGGTTAAACGGCGTTCTTTTTTGAAGGT
TGAGAAAAGAAATGGCAACCACACCATGGCATCAAATAGCTCTGAACACC
AGGGGCTCAAGCGATTAAAGAAACTCCAACATGAAAAAAGAAGTGGGCAA
TCAATGCCATCTGATTGCTCTAGAAACGATGAACCAAATCGTAACACCAA
TCGTGCTTCTAATTACAAAGAATCCCCAGAGAACACTTTGAAGGACAGAT
ATGGAAGAAGCAACCTTCCCATCTCCATAAAGTACAAGAAATTGGGAAAT
GAGGAAGCAATGATTAGGCAACGAGAGCACCATAGAAACGACAGGT
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