g.arboreum_cottongen_reftransV1_0008455, g.arboreum_cottongen_reftransV1_0008455 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: B9GZJ0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s09480g PE=4 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 2.248e-29 Identity = 70/113 (61.95%), Postives = 82/113 (72.57%), Query Frame = 3 Query: 63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNR-NTNRASNYKESPENTLKDRYGR-SNLPISIKYKKLGNEEAMIRQREHHRNDR 395 EIFRVKRRS LKVEKR N +S +SEHQGLKRLKKLQHE R GQ+ S+ R DE N +T+ S+YKE+PE KDR R S +P SIK+KKL ++E M RQREHHR DR Sbjct: 724 EIFRVKRRSSLKVEKRVVNDAASSKNSEHQGLKRLKKLQHEGRYGQTTSSEYCRADESNHGSTSSNSDYKEAPECASKDRVARGSTIPFSIKFKKLTSKEEMGRQREHHRLDR 836
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0D2R714_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G182600 PE=4 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 9.078e-29 Identity = 81/129 (62.79%), Postives = 96/129 (74.42%), Query Frame = 3 Query: 9 HEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395 HEPVSRS+VD DSD+SDSE+FRVKRRS KVEKR+GN +M+S S+HQGLKRLKK QHE + G+S+PS+ R DEP N + PEN +K R LPISIKYKK GNEEAM RQRE HR++R Sbjct: 663 HEPVSRSVVDRDSDNSDSEVFRVKRRS--KVEKRSGNDSMSSKKSDHQGLKRLKKHQHEGKCGKSLPSEGCRIDEPTHNID--------PENGMKGR-----LPISIKYKKSGNEEAMSRQREQHRDER 776
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0D2N083_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G182600 PE=4 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 9.189e-29 Identity = 81/129 (62.79%), Postives = 96/129 (74.42%), Query Frame = 3 Query: 9 HEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395 HEPVSRS+VD DSD+SDSE+FRVKRRS KVEKR+GN +M+S S+HQGLKRLKK QHE + G+S+PS+ R DEP N + PEN +K R LPISIKYKK GNEEAM RQRE HR++R Sbjct: 664 HEPVSRSVVDRDSDNSDSEVFRVKRRS--KVEKRSGNDSMSSKKSDHQGLKRLKKHQHEGKCGKSLPSEGCRIDEPTHNID--------PENGMKGR-----LPISIKYKKSGNEEAMSRQREQHRDER 777
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0D2S1X7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G182600 PE=4 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.002e-28 Identity = 81/129 (62.79%), Postives = 96/129 (74.42%), Query Frame = 3 Query: 9 HEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395 HEPVSRS+VD DSD+SDSE+FRVKRRS KVEKR+GN +M+S S+HQGLKRLKK QHE + G+S+PS+ R DEP N + PEN +K R LPISIKYKK GNEEAM RQRE HR++R Sbjct: 703 HEPVSRSVVDRDSDNSDSEVFRVKRRS--KVEKRSGNDSMSSKKSDHQGLKRLKKHQHEGKCGKSLPSEGCRIDEPTHNID--------PENGMKGR-----LPISIKYKKSGNEEAMSRQREQHRDER 816
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A0D2QZY0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G182600 PE=4 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.009e-28 Identity = 81/129 (62.79%), Postives = 96/129 (74.42%), Query Frame = 3 Query: 9 HEPVXXXXXXXXXXXXXXEIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395 HEPVSRS+VD DSD+SDSE+FRVKRRS KVEKR+GN +M+S S+HQGLKRLKK QHE + G+S+PS+ R DEP N + PEN +K R LPISIKYKK GNEEAM RQRE HR++R Sbjct: 702 HEPVSRSVVDRDSDNSDSEVFRVKRRS--KVEKRSGNDSMSSKKSDHQGLKRLKKHQHEGKCGKSLPSEGCRIDEPTHNID--------PENGMKGR-----LPISIKYKKSGNEEAMSRQREQHRDER 815
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: B9RZ08_RICCO (Transcription factor, putative OS=Ricinus communis GN=RCOM_1315610 PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 2.471e-27 Identity = 64/114 (56.14%), Postives = 80/114 (70.18%), Query Frame = 3 Query: 63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCS--RNDEPNRNTNRASNYKESPENTLKDRY-GRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395 EIFRVKRRS LKV+KR N ++S +SEHQGLKRLKKLQ E R GQ CS +DE RN S+++E+PE+ +DR+ G S +PISIK+KKL EEAM R R+H R D+ Sbjct: 630 EIFRVKRRSSLKVDKRTVNDNVSSKNSEHQGLKRLKKLQFEGRYGQISSECCSSQTDDETTRNLTSTSHFREAPESASRDRFAGASTIPISIKFKKLVKEEAMSRHRDHLRVDK 743
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A067K2E3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17120 PE=4 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 5.184e-26 Identity = 65/113 (57.52%), Postives = 79/113 (69.91%), Query Frame = 3 Query: 63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSR-NDEPNRNTNRASNYKESPENTLKDRYGR-SNLPISIKYKKLGNEEAMIRQREHHRNDR 395 EIFRVKRRS LKVEKR +S + E+QGLKRLKKLQ E R Q+M S+ S+ +DE N N + KE+PEN +DR+ R S +PISIK+KK N+EAM RQ EHHR DR Sbjct: 726 EIFRVKRRSSLKVEKRVVTDNGSSKNCEYQGLKRLKKLQFEGRIAQTMSSEYSQTDDESNHNYTPTVHCKETPENGSRDRFARGSGIPISIKFKKWVNDEAMSRQPEHHRVDR 838
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: F6HT55_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01960 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.456e-23 Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3 Query: 63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPN-RNTNRASNYKESPENTLKDRY-GRSNLPISIKYKKLGNEEAMIRQREHHRNDR 395 EIFRVKRRS +KVEKRN N + +HQGLKRLKKLQ + R GQ S+CS +E N ++ + + K S +N +DR+ + +PISIK+KK+ NEEAM RQREHHR DR Sbjct: 702 EIFRVKRRSSVKVEKRNANDASSVKHFDHQGLKRLKKLQPQGRCGQLTLSECSMTNEQNRSFSSSSHHSKRSTDNVPRDRFSAGTTMPISIKFKKMANEEAMSRQREHHRKDR 814
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: A0A067EHE6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042974mg PE=4 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.722e-23 Identity = 61/113 (53.98%), Postives = 77/113 (68.14%), Query Frame = 3 Query: 63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSN--LPISIKYKKLGNEEAMIRQREHHRNDR 395 EIFRVKRR KV+KR N +S +EHQGLKRLKKLQ E R GQ M ++ R DE N ++ SNYKE+ E KDR+ R +PISIK+KKL +EEA+ RQ+E+ R +R Sbjct: 674 EIFRVKRRP-SKVDKRCMNDVTSSTHTEHQGLKRLKKLQPEGRCGQLMLTEFRRTDESNHKSSHTSNYKETSERGSKDRFARVGGAVPISIKFKKLADEEAISRQQENCRKER 785
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Match: V4V2C1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000262mg PE=4 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.148e-22 Identity = 61/113 (53.98%), Postives = 76/113 (67.26%), Query Frame = 3 Query: 63 EIFRVKRRSFLKVEKRNGNHTMASNSSEHQGLKRLKKLQHEKRSGQSMPSDCSRNDEPNRNTNRASNYKESPENTLKDRYGRSN--LPISIKYKKLGNEEAMIRQREHHRNDR 395 EIFRVKRR KV+KR N +S +EHQGLKRLKKLQ E R GQ M ++ R DE N ++ SNYKE+ E KDR+ R +PISIK+KKL +EEA RQ+E+ R +R Sbjct: 701 EIFRVKRRP-SKVDKRCMNDVTSSTHTEHQGLKRLKKLQPEGRCGQLMLTEFRRTDESNHKSSHTSNYKETSERGSKDRFARVGGAVPISIKFKKLADEEANSRQQENCRKER 812 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0008455 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008455 ID=g.arboreum_cottongen_reftransV1_0008455; Name=g.arboreum_cottongen_reftransV1_0008455; organism=Gossypium arboreum; type=contig; length=396bpback to top |