g.arboreum_cottongen_reftransV1_0001675, g.arboreum_cottongen_reftransV1_0001675 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001675 vs. ExPASy TrEMBL
Match: V7C3T5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G058100g PE=4 SV=1) HSP 1 Score: 332.798 bits (852), Expect = 2.944e-101 Identity = 263/627 (41.95%), Postives = 345/627 (55.02%), Query Frame = -3 Query: 200 MGDSTCLMQ-PFSYTAGLPNEAKEGNPIHGLGQSISFGRYMSESLAWEKWSTFSHNKYVEEAERYARPGSVAQKKAFFEAHYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPNPRMAETGSIYDCKE--NNSEFV-------KVQSSSVDEPQVLLENNMKNEAFEKNGVVVDKAEITDLEVKETTQVKNNCVKANQSRLLGDDKELELSEG-----TQMEKPLLKGGKTNEDEFEVTSKMKPSQSSSKVFANARTSKMPSSPAKFKAPL-------------RPNNG--------------------NNLTPMTKK------------------------------SAMDISERKRSTPKSSHKSINFTHAKEFSKFTSTIIRKIDGSRIDSN-SKASKECPTPLRTPNQVSISGKPKQSSATPWSENQSARTPVNSSASVSKTARGKWNFLPTDCSKILSACRNKSQSPGIFASFNLRTEERAARRKQRLEEKFNVIQEQKVQQQTTLKEKAGTE-FKKLRQSFCFKARPLPDFYKER-TPKDQIQKVPLTKPESPGIGRKSTPCKASIVESKSSVPPHRKSSIKNNCFMHVSEKKNRTSARSLAS-RIAMSAHENTSPNIQHA 1834 MGDSTCLMQ PF Y +G+ NEA E NPIH LGQSISFGR+MSESLAWEKWS+FSHN+YVEEAERY+RPGSVAQKKAFFEAHY+ LAA+KAAALLEQAN A NATE E + ++ + NSE V KV S + DE +++ EA V K E T+ E++E V N+ Q++L D + E +E T + PL+K ++++ K KP SS K+ TSK+ S+P K A + +P NG N TPM+ K + +++KRSTP+S +NFT +E ++ T++++RK + +R+ + SKASK+ TP+RTP S + K S TP +E + +TP++ S++ T KW+FL + N+ +SP I + F+LRTEERAARRK++LEEKFN + QKVQ T LKEK TE +KLRQSFCFKARPLPDFYKER T K + +K LT E+ GRKSTP A ESK+ PP+R +K + H+ K RT L S + HEN SPNIQH Sbjct: 1 MGDSTCLMQQPFCYASGISNEANENNPIHALGQSISFGRFMSESLAWEKWSSFSHNRYVEEAERYSRPGSVAQKKAFFEAHYRKLAAQKAAALLEQANNGAQNNATEREGEGVINNDNNNDTVTHNSQITRNSEVVVEVEQDAKVLSVTSDENNAMVQLTASVEASVTPESV--KVEGTEAEMEEVAVVGNSMEVELQNQLEDLDAQREQNEKLSVTVTPILTPLVKVSISDQEVLASVGKKKPPVSSLKLSKANGTSKLTSTPVKSTAAISFKKENIASPMSIKPANGTSKFNTTPAKPIAATSFRRDNIPTPMSNKPSKSTATPIKSTAAISFRRDNIVTPMNNMPVGLSTADKKRSTPRS----VNFTPIRELNRLTASVMRKFESTRVGAGPSKASKDNLTPIRTPTMASKEIQ-KHFSLTPLTEKKRNKTPLDLSSA--HTGGPKWSFL---------SGENRMKSPIISSPFSLRTEERAARRKKKLEEKFNANEAQKVQLHTKLKEKTETEIIRKLRQSFCFKARPLPDFYKERKTSKSETKKDLLTHSETSKDGRKSTPTMA---ESKTYFPPNR-PVLKTSGTKHLQGKSGRTLTHPLTSTSTTIPTHENASPNIQHG 605
BLAST of g.arboreum_cottongen_reftransV1_0001675 vs. ExPASy TrEMBL
Match: M1AYB6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012646 PE=4 SV=1) HSP 1 Score: 325.479 bits (833), Expect = 8.354e-100 Identity = 235/520 (45.19%), Postives = 305/520 (58.65%), Query Frame = -3 Query: 320 EGNPIHGLGQSISFGRYMSESLAWEKWSTFSHNKYVEEAERYARPGSVAQKKAFFEAHYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPNPRMAETGSIYDCKENNSEFVK---VQSSSVDEPQVLLENNMKNE---AFEKNGVVVDKAEITDLEVKE-------------TTQVKNNCVKANQSRLLGDDKELELSEGTQMEKPLLK----GGKTNEDEFEVTSKMKPSQSSSKVFANARTSKMPSSPAKFKAPLRPNNGNNLTPMTKKSAMDISERKRSTPKSSHKSINFTHAKEFSKF--TSTIIRKIDGSRIDSNSK-ASKECPTPLRTPNQVSISGKPKQSSATPWSENQSARTPVNSSASVSKTARGKWNFLPTDCSKILSACRNKSQSPGIFASFNLRTEERAARRKQRLEEKFNVIQEQKVQQQTTLKEKAGTEFKKLRQSFCFKARPLPDFYKE-RTPKDQIQKVPLTKPESPGIGRK----------STPCKASIVESKSSVPPHRKSS 1768 +GNP+H LG+SISFGR++SESL WEKWSTFSH +YVEEAERYA+PGSVAQKKAFFEAHYK +AA+KAAALLEQAN NP NSE K S+S+ +P+V +E A + +V D + D E E T + +N ++ +++ E +SE + EKPLLK K +D VTSK K + SS K ++ SK P SP++ L + NN TP+T S +D+ RSTPKS +K INFT AKE K ++K + SK ASK+C TPL+TP S +G + TP SE++ +TP++ SAS S+TA KWN L + SK +A RNK QSP + F+LRTEERA RRKQ+LEEKFN +E+KVQQQTTLKEKAGTE ++LRQSFCFKARPLPDFYKE T KD +K+P+T+ + P GR S P +S+ ++ S P +K+S Sbjct: 6 QGNPVHALGESISFGRFVSESLDWEKWSTFSHKRYVEEAERYAKPGSVAQKKAFFEAHYKKIAAQKAAALLEQANQE-------------NP--------------NSEITKNSAPDSTSLVKPRVEANQEEVHENPDAVTTDSMVKDSVSVADAEEIESESPVEGPGTPEATEKEPSNQIENGETQETVSGSE--ISETSHTEKPLLKIKSSSSKLEDDPASVTSKKKSAFSSFKSAVYSKKSKFPFSPSRHNILLDVDKENNFTPITTNSNLDLMNEVRSTPKSLNKLINFTPAKEAHKIPPPPPFLKKESSKVAPTTSKAASKQCATPLKTPMATS-NGASNRPMTTPSSESRRIKTPIHPSASGSRTAGPKWNIL-SSVSKSFTAYRNKLQSPTLSTPFSLRTEERATRRKQKLEEKFNANEEKKVQQQTTLKEKAGTELRRLRQSFCFKARPLPDFYKETETAKDHAKKIPVTQTQLPKRGRMPFPSSKQGLVSKPASSSLAKNDSCKNPRKKTS 494
BLAST of g.arboreum_cottongen_reftransV1_0001675 vs. ExPASy TrEMBL
Match: M1AYB4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012646 PE=4 SV=1) HSP 1 Score: 325.094 bits (832), Expect = 1.314e-99 Identity = 235/521 (45.11%), Postives = 305/521 (58.54%), Query Frame = -3 Query: 320 EGNPIHGLGQSISFGRYMSESLAWEKWSTFSHNKYVEEAERYARPGSVAQKKAFFEAHYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPNPRMAETGSIYDCKENNSEFVK---VQSSSVDEPQVLLENNMKNE---AFEKNGVVVDKAEITDLEVKE-------------TTQVKNNCVKANQSRLLGDDKELELSEGTQMEKPLLK-----GGKTNEDEFEVTSKMKPSQSSSKVFANARTSKMPSSPAKFKAPLRPNNGNNLTPMTKKSAMDISERKRSTPKSSHKSINFTHAKEFSKF--TSTIIRKIDGSRIDSNSK-ASKECPTPLRTPNQVSISGKPKQSSATPWSENQSARTPVNSSASVSKTARGKWNFLPTDCSKILSACRNKSQSPGIFASFNLRTEERAARRKQRLEEKFNVIQEQKVQQQTTLKEKAGTEFKKLRQSFCFKARPLPDFYKE-RTPKDQIQKVPLTKPESPGIGRK----------STPCKASIVESKSSVPPHRKSS 1768 +GNP+H LG+SISFGR++SESL WEKWSTFSH +YVEEAERYA+PGSVAQKKAFFEAHYK +AA+KAAALLEQAN NP NSE K S+S+ +P+V +E A + +V D + D E E T + +N ++ +++ E +SE + EKPLLK K +D VTSK K + SS K ++ SK P SP++ L + NN TP+T S +D+ RSTPKS +K INFT AKE K ++K + SK ASK+C TPL+TP S +G + TP SE++ +TP++ SAS S+TA KWN L + SK +A RNK QSP + F+LRTEERA RRKQ+LEEKFN +E+KVQQQTTLKEKAGTE ++LRQSFCFKARPLPDFYKE T KD +K+P+T+ + P GR S P +S+ ++ S P +K+S Sbjct: 6 QGNPVHALGESISFGRFVSESLDWEKWSTFSHKRYVEEAERYAKPGSVAQKKAFFEAHYKKIAAQKAAALLEQANQE-------------NP--------------NSEITKNSAPDSTSLVKPRVEANQEEVHENPDAVTTDSMVKDSVSVADAEEIESESPVEGPGTPEATEKEPSNQIENGETQETVSGSE--ISETSHTEKPLLKIKQSSSSKLEDDPASVTSKKKSAFSSFKSAVYSKKSKFPFSPSRHNILLDVDKENNFTPITTNSNLDLMNEVRSTPKSLNKLINFTPAKEAHKIPPPPPFLKKESSKVAPTTSKAASKQCATPLKTPMATS-NGASNRPMTTPSSESRRIKTPIHPSASGSRTAGPKWNIL-SSVSKSFTAYRNKLQSPTLSTPFSLRTEERATRRKQKLEEKFNANEEKKVQQQTTLKEKAGTELRRLRQSFCFKARPLPDFYKETETAKDHAKKIPVTQTQLPKRGRMPFPSSKQGLVSKPASSSLAKNDSCKNPRKKTS 495
BLAST of g.arboreum_cottongen_reftransV1_0001675 vs. ExPASy TrEMBL
Match: A0A072U7R9_MEDTR (TPX2 (Targeting protein for Xklp2) family protein, putative OS=Medicago truncatula GN=MTR_6g022230 PE=4 SV=1) HSP 1 Score: 323.168 bits (827), Expect = 4.413e-98 Identity = 252/588 (42.86%), Postives = 346/588 (58.84%), Query Frame = -3 Query: 203 MGDSTCLMQPFSYTAGLPNEAKEG-NPIHGLGQSISFGRYMSESLAWEKWSTFSHNKYVEEAERYARPGSVAQKKAFFEAHYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPNPRMAETGSIYD--CKENNSEFVKVQSSSVD---EPQVLLENNMKNEAFEK--NGVVVDKAEITDLE-------------------------VKETTQVKNNCVKANQSRLLGDDKELELSEGTQMEKPLLKGGKTNEDEFEVTSKMKPSQSSSKVF-ANARTSKM-PSSPAKFKAPLRPNNGNNLTPMT--KKSAMDISERKRSTPKSSHKSINFTHAKEFSKFTSTIIRKIDGSRID-SNSKASKECPTPLRTPNQVSISGKPKQSSATPWSENQSARTPVNSSASVSKTARGKWNFLPTDCSKILSACRNKSQSPGIFASFNLRTEERAARRKQRLEEKFNVIQEQKVQQ-QTTLKEKAGTEF-KKLRQSFCFKARPLPDFYKERTPKD-QIQKVPLTKPESPGIGRKSTPCKASIVESKSSVPPHRKSSIKNNCFMHVSEKKNRTSARSLASRIAM---SAHENTSPNIQH 1834 MGDS CLMQPF Y +G+ N++ + N H LGQS+SFGR+MSESLAWEKWS+FSHN+YVEEAERY++PGSVAQKKAFFEAHYK LAA+KAAALLEQ N AA+ N + N ++ S Y+ KE+ + KV S ++D E + E+N E + GVV+ + + +L+ + E T V N ++ L +D+ + + Q+ P+LK +++ TSK KP SS + +N TSK ++P K AP+ N TPM+ + SA+ ++ KR TP K +NFT +EF++ T++++R+ + +R+ S+SK SK+ TPL+TP S + K SS TP +E + +TP +SSAS + TA KW L + NK +SP I + F+LRTEERAARRK++LEEKFN +EQKVQQ T LKEK G+E +KLRQSFCF+ARPLPDFYKER + + +KV T ES GR S+ E K+S+P +R S+KNN + K A + +M +AHENTSPNIQH Sbjct: 1 MGDSACLMQPFCYASGISNDSNQNINTNHALGQSVSFGRFMSESLAWEKWSSFSHNRYVEEAERYSKPGSVAQKKAFFEAHYKKLAAQKAAALLEQQNNAASQNNVTEKEDNDENNDSQKDSKYEVVVKEDRDDG-KVLSHALDSNMEKCIASESNKLEECETQMEQGVVLRNSMMVELQKRLENADTFQEQSEKFCATPPIMTPILEKTVVLRNSLR---DELRKEDENV---DTLQIMTPILKVSSIDQEVLASTSKKKPPVSSFNLIKSNNGTSKFTTTTPVKSTAPISSKIDNFATPMSNNRPSALSNADIKRPTP----KKVNFTPIREFNRLTASVMRRFESTRVGASSSKVSKDSLTPLKTPTMASKEMQ-KHSSLTPLTEKKRNKTPTDSSASRNHTAGPKWRLL---------SGENKMRSPIISSPFSLRTEERAARRKKKLEEKFNANEEQKVQQLHTKLKEKTGSEIRRKLRQSFCFQARPLPDFYKERKASNIETRKVIQTHYESSNEGRHPI---LSMKECKTSLPLNR-PSLKNNGTKNFIAKNGPILAHHPLTSNSMKIITAHENTSPNIQH 563
BLAST of g.arboreum_cottongen_reftransV1_0001675 vs. ExPASy TrEMBL
Match: K7KNC7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 293.508 bits (750), Expect = 3.419e-86 Identity = 253/636 (39.78%), Postives = 331/636 (52.04%), Query Frame = -3 Query: 200 MGDSTCLMQ-PFSYTAGLPNEAKEGNPIHGLGQSISFGRYMSESLAWEKWSTFSHNKYVEEAERYARPGSVAQKKAFFEAHYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPNPRMAETGSIYDCKENNSEFVKVQSSSVDEPQVLLENNMKNEAF--EKNGVVVDKAEITDLEVK-ETTQVKNNCVKANQSRLLGDDKELELSE-----GTQMEK--------------PLLKGGKTNEDEFEVTSKMKPSQSSSKVFANARTSKMPSSPAKFKAPLRPNNGNNLTPMTKKSAMDISERKRSTPKSSHKSINFTH-----------AKEFSKFTSTIIRK---IDGSR------------IDSNSKASKECP-----TPLRTPNQVSIS------------GKPKQS---------------------SATPWSENQSARTPVN-SSASVSKTARGKWNFLPTDCSKILSACRNKSQSPGIFASFNLRTEERAARRKQRLEEKFNVIQEQKVQQQTTLKEKAGTE-FKKLRQSFCFKARPLPDFYKER-TPKDQIQKVPLTKPESPGIGRKSTPCKASIVESKSSVPPHRKSSIKNNCFMHVSEKKNRTSARSLAS-RIAMSAHENTSPNIQHA 1834 MGDSTCLMQ PF Y +G+ NEA E NPIH LGQSISFGR+MSESLAWEKWS+FSHN+YVEEAERY+RPGSVAQKKAFFEAHYK LAA+KAAALLEQAN A N E + D N+++ Q S E V E + K + E++ VV D+ V E+ +V+ + ++G ++EL QME+ P++K K+ ++ KP SS K+ TSK+ ++P K A + N TP++ K A S + + P S +I+F A SKFT+T ++ I R I S + + P TP+R N+++ S G K S S TP +E + +TP++ SSA + T KW L + N+ +SP I + F+LRTEERAARRK++LEEKFN + QKVQ T LKEK TE +KLRQSFCFKARPLPDFYKER T ++ +K PLT E+P GRKSTP A+ +SK+S PP+R +KN+ H K RT + L S + HENTSPNIQ+ Sbjct: 1 MGDSTCLMQQPFCYASGISNEANENNPIHALGQSISFGRFMSESLAWEKWSSFSHNRYVEEAERYSRPGSVAQKKAFFEAHYKKLAAQKAAALLEQANNEAQK----------NATGQEDEGVID---NDNDTHNSQISPNSEMVVKEEQDAKVLSVTSEQDAVVRLTVSEHDVSVTPESAKVEGAEAVMEKVAVVGSSMKVELQNQVEDVDAQMEESEKLSAIVTPPILTPIVKVSKSEQEVLASVGMKKPPVSSFKLSKFNGTSKLTTTPVKSTATISFKRDNIATPISNKPANGTS-KFTTAPIKSTAAISFKRDNIATPMSNKLANGTSKFTTTPVQSTAAISFERDNIVTPMRNKPAILSTADKKRSTPRSVNFTPIRELNRLTASVMRKFESTRAGAGSSKASKDSLTPLRTPTMASKEMQKQSSLTPLTEKKRNKTPLDLSSAPGNHTGGSKWRLL---------SGENRMRSPLISSPFSLRTEERAARRKKKLEEKFNANEAQKVQLHTKLKEKTETEIIRKLRQSFCFKARPLPDFYKERKTSTNETKKDPLTHFETPKDGRKSTPSMAA--DSKTSFPPNR-PVLKNSGTKHFQGKSGRTLSHPLTSTSTIIPTHENTSPNIQNG 610
BLAST of g.arboreum_cottongen_reftransV1_0001675 vs. ExPASy Swiss-Prot
Match: WVD2_ARATH (Protein WAVE-DAMPENED 2 OS=Arabidopsis thaliana GN=WVD2 PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 8.080e-11 Identity = 44/124 (35.48%), Postives = 72/124 (58.06%), Query Frame = -3 Query: 353 DCSKILSACRNKSQSPGIFASFNLRTEERAARRK---QRLEEKFNVIQEQKVQQQTTLKEKAGTEFKKLRQSFCFKARPLPDFYKERTP-KDQIQKVPLTKPESPGIG---RKSTPCKASIVES 703 DCS + S+ +N + R+ +RA +RK Q+LEEK ++ ++++ + KE+ K+LR++ FKA P+PDFY +R P K +++K PLT+P+SP + RKS C +I S Sbjct: 67 DCS-VASSMKNAKSKVTHGTAPRFRSAQRAEKRKEYYQKLEEKHQALEAERIELEQRQKEEQEAAIKQLRKNLKFKANPVPDFYYQRPPVKPELKKFPLTRPKSPKLNLSRRKS--CSDAITSS 187
BLAST of g.arboreum_cottongen_reftransV1_0001675 vs. ExPASy Swiss-Prot
Match: WDL1_ARATH (Protein WVD2-like 1 OS=Arabidopsis thaliana GN=WDL1 PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 6.700e-8 Identity = 31/84 (36.90%), Postives = 56/84 (66.67%), Query Frame = -3 Query: 395 LRTEERAARRK---QRLEEKFNVIQEQKVQQQTTLKEKAGTEFKKLRQSFCFKARPLPDFYKERTP-KDQIQKVPLTKPESPGI 634 R+ +RA +RK Q+LEEK ++ ++ + + K++ K+LR++ FKA+P+P+FY E P K +++K+PLT+P+SP + Sbjct: 128 FRSAQRAEKRKEYYQKLEEKNQALEAERNELEQRQKDEQEAALKQLRKNLKFKAKPVPNFYYEAPPAKPELKKLPLTRPKSPKL 211 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001675 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0001675 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001675 ID=g.arboreum_cottongen_reftransV1_0001675; Name=g.arboreum_cottongen_reftransV1_0001675; organism=Gossypium arboreum; type=contig; length=1896bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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