g.raimondii_cottongen_reftransV1_0001178, g.raimondii_cottongen_reftransV1_0001178 (contig) Gossypium raimondii
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: A0A0D2PED7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G244700 PE=4 SV=1) HSP 1 Score: 531.561 bits (1368), Expect = 7.486e-180 Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 3 Query: 906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYFS 1778 SWRALRIQKVENESKVSSSAATLDKAPSASSPVSVSKTNWWENLSDEDNEDLDLEDLSKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYFS Sbjct: 94 SWRALRIQKVENESKVSSSAATLDKAPSASSPVSVSKTNWWENLSDEDNEDLDLEDLSKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYFS 384 HSP 2 Score: 199.904 bits (507), Expect = 2.022e-53 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 2 Query: 80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL Sbjct: 1 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 93
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: A0A0B0MYF6_GOSAR (Programmed cell death protein 2-like protein OS=Gossypium arboreum GN=F383_26463 PE=4 SV=1) HSP 1 Score: 509.22 bits (1310), Expect = 3.725e-171 Identity = 278/291 (95.53%), Postives = 281/291 (96.56%), Query Frame = 3 Query: 906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYFS 1778 SWRALRIQKVENESK SSSAATLDKAPSASS VSV KTNWWENLSDEDNEDLDLEDLS+AFSEV SLSSEPKK SS RNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNH SLSVKEKEGD+DDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLAT EVDNAG CGLCGASRHFELQLMPPLIYFLQ EVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETV+VQFDKPLNECLQRYFS Sbjct: 94 SWRALRIQKVENESKESSSAATLDKAPSASSLVSVPKTNWWENLSDEDNEDLDLEDLSRAFSEVASLSSEPKKTSSYRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHLSLSVKEKEGDVDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATTEVDNAGNCGLCGASRHFELQLMPPLIYFLQ-EVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVIVQFDKPLNECLQRYFS 383 HSP 2 Score: 193.356 bits (490), Expect = 4.115e-51 Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 2 Query: 80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLN+EDRLLLVF CV PNCGSS L Sbjct: 1 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNVEDRLLLVFGCVAPNCGSSSL 93
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: A0A061DJX6_THECC (Programmed cell death 2 C-terminal domain-containing protein, putative OS=Theobroma cacao GN=TCM_001256 PE=4 SV=1) HSP 1 Score: 431.024 bits (1107), Expect = 8.037e-141 Identity = 232/291 (79.73%), Postives = 257/291 (88.32%), Query Frame = 3 Query: 906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYFS 1778 SWRALRIQKVEN++K SS AT +K P+A+SPVSVSKTNWW+ L DED+ED+DLEDLSKAFSE SL+S+PKK +SNRNSE AVKH L AQT +DTDTPVMPCFYIYSQAEPSSK+F+SM SN++SLSVKEKEGD+DDHGQEETW+AENYEYDKAL+ADRTYLKFKKQLDASPEQCFRYAFGGKPLLA AEV +AGKC LCGASRHFE+QLMPPLIYFLQEE D CHK SLENWNWL L VYTCSKSCS FD+EKS G WFVVEETV+VQF+KPLNEC +RYFS Sbjct: 92 SWRALRIQKVENDAKEFSSTATQEKVPAAASPVSVSKTNWWQKLGDEDDEDVDLEDLSKAFSEAASLTSQPKKTNSNRNSETAVKHPSPLTAQTIRIDTDTPVMPCFYIYSQAEPSSKNFASMYSNYTSLSVKEKEGDVDDHGQEETWKAENYEYDKALSADRTYLKFKKQLDASPEQCFRYAFGGKPLLAVAEVGDAGKCRLCGASRHFEMQLMPPLIYFLQEEADACHKASLENWNWLMLAVYTCSKSCSKPFDKEKS--NSGDWFVVEETVIVQFEKPLNECAERYFS 380 HSP 2 Score: 166.777 bits (421), Expect = 6.254e-42 Identity = 80/93 (86.02%), Postives = 84/93 (90.32%), Query Frame = 2 Query: 80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358 MS VVLGLPGPWAE REPSDHYTTKIGGLPDWPLPIEAL NP+LIHCT+CGSKLCLVAQVYAPVSS TL IE+RLLLVF CVTP CGS+PL Sbjct: 1 MSGVVLGLPGPWAEHYREPSDHYTTKIGGLPDWPLPIEAL--NPSLIHCTKCGSKLCLVAQVYAPVSSETLKIEERLLLVFGCVTPTCGSTPL 91
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: V4S1N7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026167mg PE=4 SV=1) HSP 1 Score: 330.487 bits (846), Expect = 3.541e-103 Identity = 185/292 (63.36%), Postives = 233/292 (79.79%), Query Frame = 3 Query: 906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQ-RYFS 1778 SWRALR+QK++N + S +A+ + APS +SPVSVSKT+WW++ ++E+++D+DLE+L KA SE SL+S KK +SNR+S+ AVK S L + RGVD DTPV+PCFYI +Q EPSSKD +S+ SN+SSLS+KEK+ ++DDH QEETW E+YEYD+AL ADRTYLKFKK+LDA PEQCFRY++GGKPLLA AEV +AG+C LCGASRHFE+QLM PLIYFLQE +DC GSL+NWNW+TL+VYTCSK+CSNS +EKS + W V EE V VQF+K NE Q YFS Sbjct: 10 SWRALRVQKLDNAKE--SCSASQEVAPSNASPVSVSKTSWWDDENEEEDDDVDLEELGKALSEAASLTSHSKKPNSNRHSKSAVKPS-HLSPRVRGVDVDTPVVPCFYICTQEEPSSKDVASIWSNYSSLSLKEKQSNVDDHVQEETWGEEHYEYDRALTADRTYLKFKKRLDAYPEQCFRYSYGGKPLLAMAEVGDAGRCRLCGASRHFEMQLMSPLIYFLQEAANDCLNGSLDNWNWMTLIVYTCSKNCSNSIKQEKS---NRDWLVAEEAVTVQFEKSPNESAQLNYFS 295
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: V4UP53_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026167mg PE=4 SV=1) HSP 1 Score: 329.717 bits (844), Expect = 8.964e-102 Identity = 185/292 (63.36%), Postives = 233/292 (79.79%), Query Frame = 3 Query: 906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQ-RYFS 1778 SWRALR+QK++N + S +A+ + APS +SPVSVSKT+WW++ ++E+++D+DLE+L KA SE SL+S KK +SNR+S+ AVK S L + RGVD DTPV+PCFYI +Q EPSSKD +S+ SN+SSLS+KEK+ ++DDH QEETW E+YEYD+AL ADRTYLKFKK+LDA PEQCFRY++GGKPLLA AEV +AG+C LCGASRHFE+QLM PLIYFLQE +DC GSL+NWNW+TL+VYTCSK+CSNS +EKS + W V EE V VQF+K NE Q YFS Sbjct: 93 SWRALRVQKLDNAKE--SCSASQEVAPSNASPVSVSKTSWWDDENEEEDDDVDLEELGKALSEAASLTSHSKKPNSNRHSKSAVKPS-HLSPRVRGVDVDTPVVPCFYICTQEEPSSKDVASIWSNYSSLSLKEKQSNVDDHVQEETWGEEHYEYDRALTADRTYLKFKKRLDAYPEQCFRYSYGGKPLLAMAEVGDAGRCRLCGASRHFEMQLMSPLIYFLQEAANDCLNGSLDNWNWMTLIVYTCSKNCSNSIKQEKS---NRDWLVAEEAVTVQFEKSPNESAQLNYFS 378 HSP 2 Score: 138.658 bits (348), Expect = 5.364e-32 Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = 2 Query: 80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358 M +V+LG+PGPWA DNREPSDHYT+KIGGLPDWP ++A+ + L+ C CGSKLCLVAQVYAP+SS L IE+R +LVF CV P CGSSPL Sbjct: 1 MGKVILGMPGPWAVDNREPSDHYTSKIGGLPDWPASLDAIT-STNLLQCGACGSKLCLVAQVYAPLSSEGLKIEERNVLVFGCVMPKCGSSPL 92
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: B9STA9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0431540 PE=4 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 1.814e-85 Identity = 163/293 (55.63%), Postives = 210/293 (71.67%), Query Frame = 3 Query: 906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWX-XXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQR-YFS 1778 SWRALR+Q++++E K S+S + +++PVSVSKTNW E DE ++DLDL+ L KA SE SL+S KK E V +S +I +TR VD D+PV+PCFYIY+Q EP S + +S+CSN+S+LS+K+K+ D QEE W E YEYDKAL ADRTYLKFKK+LDA+PEQCFRY FGG+PLLA EV++ G C LCG RH+E+QLMPPLIYFLQ+ D K +LENWNW+TL+V+TCSKSCSN ++ K + G W VVEE V+VQ + PL+E + YFS Sbjct: 93 SWRALRLQRLDDERKPSTSFE--EAVAVSTTPVSVSKTNWLECLDDDESDKDLDLDALGKALSEAGSLASHSKKPQKTDQYESLV-NSPPMITRTRMVDMDSPVVPCFYIYTQKEPPSGNVTSICSNYSTLSIKDKQSGDGDQEQEEVWGEEAYEYDKALTADRTYLKFKKKLDANPEQCFRYLFGGRPLLAKPEVEDPGTCKLCGGPRHYEMQLMPPLIYFLQDVAADSQKHALENWNWMTLIVFTCSKSCSNPSNQAK--NETGGWIVVEEAVVVQLETPLHESVHLGYFS 380 HSP 2 Score: 125.561 bits (314), Expect = 1.400e-27 Identity = 58/91 (63.74%), Postives = 73/91 (80.22%), Query Frame = 2 Query: 80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSS 352 MSR+VLG+PG WA+DNREPSD YT+KIGGLPDWP E+L + L++C+ CG+KLCLVAQV AP+SS + +DRLLLVF C+ P CGS+ Sbjct: 1 MSRLVLGMPGAWADDNREPSDCYTSKIGGLPDWPFSQESLTPS-NLLNCSVCGAKLCLVAQVCAPISSSSFKADDRLLLVFGCLLPECGSN 90
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: B9HG25_POPTR (Programmed cell death 2 C-terminal domain-containing family protein OS=Populus trichocarpa GN=POPTR_0007s06650g PE=4 SV=1) HSP 1 Score: 280.796 bits (717), Expect = 4.047e-83 Identity = 170/294 (57.82%), Postives = 212/294 (72.11%), Query Frame = 3 Query: 906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDF-SSMCSNHSSLSVKEKE-GDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNE-CLQRYFS 1778 SWRALR+QKV++E + S+ + ++ ++ PVSVSKTNW + SDED + L KA SE +L+S KK NR SE VK+S +L+A+T GVD +TPV+PCFY+Y+Q EPSSKD SS+CS +S LSVKE++ + +D + E E YEYDKAL+ADRTYLKFKKQLDA+P+QC R+ +GGKPLLATAE+ + G C LCG RHFE+QLMP LI FL + DDC K LENWNW+TLV+YTCSKSCSNSFD EKS W V EE VLVQF+K L+E L YFS Sbjct: 95 SWRALRVQKVDSERE---SSVSTEEVVPSTPPVSVSKTNWLGDDSDEDIDLEALS---KALSEAGTLASHSKKKDGNRRSESVVKNS-TLVART-GVDMETPVVPCFYMYTQ-EPSSKDIVSSICSTYSELSVKEEQICNYNDDEMGDAGEQEVYEYDKALSADRTYLKFKKQLDANPDQCSRHLYGGKPLLATAELGDPGNCKLCGGFRHFEMQLMPQLISFLLDGADDCQKNVLENWNWMTLVIYTCSKSCSNSFDREKSTTSG--WTVAEEAVLVQFEKALHESILPGYFS 377 HSP 2 Score: 134.42 bits (337), Expect = 1.240e-30 Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 2 Query: 110 PWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358 PWA+DNREPSD YT+KIGGLPDWP P E L P L+ C CGSKLCLVAQVYAP+SSGTLNIEDR +LVF C+ PNCG++PL Sbjct: 14 PWADDNREPSDLYTSKIGGLPDWPFPAENLA--PNLLICGACGSKLCLVAQVYAPISSGTLNIEDRTILVFGCIIPNCGNTPL 94
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: W9SP75_9ROSA (Programmed cell death protein 2-like protein OS=Morus notabilis GN=L484_008330 PE=4 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 1.139e-76 Identity = 129/226 (57.08%), Postives = 163/226 (72.12%), Query Frame = 3 Query: 1080 KAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGV-DTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKE---GDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDK 1745 KA E +++S KK SN S+ +K S S + T V DT TPV+PCFY+Y Q EP+SKD +S+CSN+SSLS+KE E GD +D+ EE+W E YEYD+AL DRTYLKFKK+LDA PEQCFRY +GGKPL+A E + GKC +CG SRHFE+QLMPPL+YFLQE DD + SLENWNW+T++VYTCS SCS ++++ +G W V EE V VQF+K Sbjct: 103 KALFEAATMASHAKKSHSNEKSKTNIKPSSS--STTLQVEDTKTPVVPCFYVYMQKEPTSKDVTSICSNYSSLSIKENEENKGDSEDNVPEESWAEEKYEYDRALTTDRTYLKFKKRLDAYPEQCFRYLYGGKPLMAEKEEGDPGKCRICGGSRHFEMQLMPPLLYFLQEAADDSQRQSLENWNWMTVIVYTCSNSCSLPSSDQENSSNNG-WIVAEEAVFVQFEK 325 HSP 2 Score: 95.5153 bits (236), Expect = 6.615e-18 Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 2 Query: 80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQ 262 M+ V+LG+PGPWA+DNREPSDHYTTK+GGLPDWPL +AL N L++C+ CGSKL L+ Q Sbjct: 1 MAEVLLGMPGPWADDNREPSDHYTTKVGGLPDWPLTKDALGSN--LLNCSVCGSKLSLITQ 59
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: A0A059B8F2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04843 PE=4 SV=1) HSP 1 Score: 262.692 bits (670), Expect = 2.841e-76 Identity = 145/294 (49.32%), Postives = 192/294 (65.31%), Query Frame = 3 Query: 906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYFS*FT 1787 SWRA+RIQ+ E + S++ D +A+ VS + NWW +L + D + E +A +E +++S KK++ NSE K SLS +R VD PVMPCFYIY+ EP SKD +S C N+SSLS+ ++D+H +EE + E+YEYD+AL ADRTY KFKK+LDA PEQC RY+ GGKPLLAT E+ + G+C LCG R FE+QLMPPL+YFL E DD K +LENWNW+T ++YTCSKSC +S +EE G W V EE VLVQ +K L + + Y S +T Sbjct: 92 SWRAIRIQRSCEEKE--SNSTCCDMGMAATPSVSAGENNWWNDLDENDEDVDLEELG-RALAEAATVTSSSKKLNRQENSEEVAKLSLSR-PISRQVDDSIPVMPCFYIYTLEEPYSKDATSACLNYSSLSI-----NVDNHVREEVLDEESYEYDRALMADRTYFKFKKRLDAYPEQCLRYSNGGKPLLATKEIGDPGRCKLCGGPRQFEMQLMPPLLYFLHEAADDSQKDALENWNWMTAIIYTCSKSCYDSQNEE---FRSGDWIVAEEAVLVQCEKSLKQAVLDYISHYT 373 HSP 2 Score: 134.806 bits (338), Expect = 1.206e-30 Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 2 Query: 80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358 M RV LG+PGPWA+DNRE SDHYT KIGGLPDWP P+ + + + C+ CG+KLCLV QV AP++SG L +EDR+L +FAC+ P CGSSPL Sbjct: 1 MGRVFLGMPGPWADDNREASDHYTAKIGGLPDWPSPL--MDWGSDFLKCSICGNKLCLVGQVPAPITSGNLKVEDRVLYIFACIAPKCGSSPL 91
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: F6H4B0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g01650 PE=4 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 1.250e-72 Identity = 127/234 (54.27%), Postives = 165/234 (70.51%), Query Frame = 3 Query: 1080 KAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQR-YFS 1778 +A S SL+S KK +N++++ KH L L TR V D PV+PCFY Y+Q EPS+++ + + SN+S D QEETWE E+YEYD+ NADRTYLKFKK +DA PEQCFRYA+GGKPLLATA+V+N G C LCG RH+E+QLMPPL+YFLQE +DC K L++WNW+TLVVYTCSKSCS+ FD++ + G W V EE V++QF++ L E + + YFS Sbjct: 157 RALSVAASLASHSKKQMNNQDTKTTEKH-LPLSLGTRVVAIDAPVLPCFYTYTQEEPSTREVTVVSSNYSQ-----------DSEQEETWEKESYEYDRTWNADRTYLKFKKSMDAFPEQCFRYAYGGKPLLATAKVENPGTCKLCGGPRHYEMQLMPPLLYFLQEGANDCKKHLLDHWNWMTLVVYTCSKSCSH-FDDKGKFNIEG-WVVAEEAVVIQFEESLQESVHKDYFS 376 HSP 2 Score: 114.775 bits (286), Expect = 5.584e-24 Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 2 Query: 95 LGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIH---CTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNC 343 LG+PGPWA+DN EPSDHYT KIGGLPDWP+P +F + H C C S LCLVAQVYAP+S +L IE+R++ +F CV P C Sbjct: 11 LGMPGPWADDNSEPSDHYTIKIGGLPDWPVP----QFPSAITHILRCAACQSNLCLVAQVYAPISGKSLKIEERVIYIFGCVAPEC 92
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: PDD2L_CHICK (Programmed cell death protein 2-like OS=Gallus gallus GN=PDCD2L PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 4.600e-15 Identity = 62/194 (31.96%), Postives = 99/194 (51.03%), Query Frame = 3 Query: 1110 SEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKE---KEGDIDDHGQEETWEAEN----YEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLAT---AEVDNA-GKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSC 1658 SE +S + N++ ++ + + T PV +YI E F + ++H++ +KE +EG +H E++ E+ YE K + D T+ KF K++ PEQ RY++GG+PL T A DN+ C CG++R FE QLMP L+ L + D S+E + T++VYTC +SC Sbjct: 177 SEAADVSGSLNTDLLLREEMVMA-------TSAPVFHSYYISVVDEADYAGF--LDTDHANKLLKEYQQREGVDLEHLMSESFAGEDSNEKYEKTKVRSGDHTFHKFMKRISVCPEQILRYSWGGQPLFITCPPANFDNSIPACSNCGSNRVFEFQLMPALVSMLWGDADL----SVE---FGTVIVYTCERSC 354
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: TSR4_SCHPO (Probable 20S rRNA accumulation protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25H2.15 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.353e-12 Identity = 43/128 (33.59%), Postives = 66/128 (51.56%), Query Frame = 3 Query: 1341 ETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAE---------VDNAGK-----CGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEK 1682 E WE E+YE ++ ++T+ F +++ +P QC RY GG PLLA+ V N GK C LC + R FE+QLMP I L +E+ + W T++V TCS C+ ++++ Sbjct: 267 EAWEKESYEKSPSV-YEKTFRLFSEKISHNPTQCLRYERGGTPLLASGRDKLGQQLKSVTNFGKSPVPLCPLCKSPRLFEMQLMPHAISILNDEIAE----------WSTILVATCSMDCNPPINKDR 383
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: PDD2L_HUMAN (Programmed cell death protein 2-like OS=Homo sapiens GN=PDCD2L PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.797e-12 Identity = 53/170 (31.18%), Postives = 81/170 (47.65%), Query Frame = 3 Query: 1170 SLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLS-VKEKEGDIDDHGQEETWEA---ENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLL---ATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSC 1658 +++ V P+ +YI E +DF ++ HS L +++EG D ++ E YE + D+T+ KF K++ A EQ RY++ G+PL T+EV C CG R FE QLMP L+ L+ + G + T++VYTC KSC Sbjct: 170 AVLGAAHPVPPGLPLFLPYYICVADEDDYRDFVNLDHAHSLLRDYQQREGIAMDQLLSQSLPNDGDEKYEKTIIKSGDQTFYKFMKRIAACQEQILRYSWSGEPLFLTCPTSEVTELPACSQCGGQRIFEFQLMPALVSMLKSA----NLGLSVEFG--TILVYTCEKSC 333
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: PDD2L_MOUSE (Programmed cell death protein 2-like OS=Mus musculus GN=Pdcd2l PE=2 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.237e-9 Identity = 38/104 (36.54%), Postives = 52/104 (50.00%), Query Frame = 3 Query: 1356 ENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLL---ATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSC 1658 E YE + D T+ +F K++ A EQ RY++ G+PL T EV C CG R FE QLMP L+ L + G + T++VYTC +SC Sbjct: 242 EKYEKTTVSSGDPTFYRFMKRIAACQEQILRYSWSGEPLFLSCPTFEVSEVPACSGCGGQRTFEFQLMPALVSMLSSA----NLGLAVEFG--TILVYTCKQSC 339
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: TSR4_YEAST (20S rRNA accumulation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR4 PE=1 SV=2) HSP 1 Score: 61.6178 bits (148), Expect = 1.283e-8 Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 3 Query: 1389 DRTYLKFKKQLDASPEQCFRYAFGGKPLL-ATAEVDNAGKCGLCG----ASRHFELQLMPPLIYFLQEEVDDCHKGSLEN-WNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQ 1736 D T+ KF++ + +P Q RY GGKPLL A +VD G + R FE+QLMP +I+ L+E V S++N W T++V+T ++ FDE HG G VEE V VQ Sbjct: 295 DDTFQKFQEVVGYNPLQVLRYDLGGKPLLYAETKVDILSTVPRPGYNPSSQRIFEMQLMPKMIFDLEEVV------SVDNGMEWGTILVFTDVENYMPEFDE----HGVG---YVEECVKVQ 403
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: PDCD2_BOVIN (Programmed cell death protein 2 OS=Bos taurus GN=PDCD2 PE=2 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 7.635e-7 Identity = 33/94 (35.11%), Postives = 48/94 (51.06%), Query Frame = 3 Query: 1389 DRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGK----CGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSC 1658 DR + KFK ++ PEQ RY G PL + E K C CGA R FE Q+MP L+ +L+ + + +W L ++TC++SC Sbjct: 238 DRIFRKFKTKISLEPEQILRYGRGIAPLWISGENTPKEKDIPDCP-CGAKRLFEFQVMPQLLNYLKADRLG------RSVDWGVLAIFTCAESC 324 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 6
InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
Sequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0001178 ID=g.raimondii_cottongen_reftransV1_0001178; Name=g.raimondii_cottongen_reftransV1_0001178; organism=Gossypium raimondii; type=contig; length=2238bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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