g.raimondii_cottongen_reftransV1_0001178, g.raimondii_cottongen_reftransV1_0001178 (contig) Gossypium raimondii
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: A0A0A0K8S8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014680 PE=4 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 1.677e-72 Identity = 152/284 (53.52%), Postives = 192/284 (67.61%), Query Frame = 3 Query: 909 WRALRIQKVENE--SKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLN 1754 WR LR+QK ++ SKVS L ++ S +KTNWWE L +E +E++DLE+L KAFS+V + S K+ S +S+ K S TR VD TPV+PCFYIY++ EPSSKD S MCSN++SLS+KE + D +D QEE W E YE+DKAL ADRTYLKFKK+LDA PEQC RY+FGGKP+LA +E AGKC CG SR FE+QLMPPL+YFLQE D+ K LE WNW+TL+V+TCS+SCS S G W + EE+ +VQ +KP N Sbjct: 91 WRVLRVQKSCDKEFSKVSQEIGPL------TTSTSAAKTNWWEQLDEESDEEMDLEELQKAFSDVATKVSHAKETPSKSHSKTVTKSLTS--RPTRVVDVKTPVVPCFYIYTEDEPSSKDIS-MCSNYASLSLKENQSDEEDSIQEEKWSEEGYEHDKALTADRTYLKFKKKLDAYPEQCLRYSFGGKPILARSEDGEAGKCKACGGSRQFEMQLMPPLLYFLQEAADESQKQLLETWNWMTLLVHTCSESCSQS----SEKSDDGNWIITEESTIVQLEKPFN 361 HSP 2 Score: 125.176 bits (313), Expect = 1.944e-27 Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 2 Query: 80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358 M V+LGLPGPWA+DN E SDHYTTK+GG+PD P N +L+ C+QCGSKLCLV Q+YAPVS NI++R LLVF C+TP CGSS L Sbjct: 1 MGAVILGLPGPWADDNLELSDHYTTKVGGIPDLPFQ----NVNHSLLDCSQCGSKLCLVLQIYAPVSIDRTNIDERFLLVFGCLTPECGSSSL 89
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: M5WBD5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007320mg PE=4 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.756e-71 Identity = 115/194 (59.28%), Postives = 148/194 (76.29%), Query Frame = 3 Query: 1194 VDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYF 1775 VD + PV+PCFYIY+Q EPSSK+ +S+CS +SSLS+ ++ + +DH Q+ETW E YEYDKAL ADRTYLKFKK+LDA PEQCFRY++GGKPLLA++ + GKC LCG SR +E+QLMPP++YF+QE DD + SLENWNW+TL+VYTCSKSCS +E KS G W V EE V+VQ +K + +R + Sbjct: 181 VDINKPVVPCFYIYTQEEPSSKNLTSLCSKYSSLSIAKEGNNDEDHVQDETWAEEAYEYDKALTADRTYLKFKKRLDAYPEQCFRYSYGGKPLLASSTEGDPGKCRLCGGSRQYEMQLMPPVLYFVQEAADDYQRPSLENWNWMTLMVYTCSKSCSQ-HNEGKS--SKGNWLVTEEAVVVQVEKSFHGLAERGY 371 HSP 2 Score: 135.576 bits (340), Expect = 4.677e-31 Identity = 61/93 (65.59%), Postives = 75/93 (80.65%), Query Frame = 2 Query: 80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358 M+ V+LG+PGPWA+D RE SDHYTTKIGGLPDWPLP +++ P L+ C+ CGSKL LVAQVYAP+SS L IE+R+L VF C+ P CGS+PL Sbjct: 1 MAAVLLGMPGPWADDYREQSDHYTTKIGGLPDWPLPEKSV--TPDLLECSACGSKLSLVAQVYAPISSKNLKIEERVLFVFGCLMPKCGSTPL 91
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: A0A059B829_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04852 PE=4 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 1.380e-66 Identity = 138/298 (46.31%), Postives = 182/298 (61.07%), Query Frame = 3 Query: 906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKH----SLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYFS*FT 1787 SWRA+ IQ+ E + S++ D +A+ VS + NWW L + D + E +A +E +++S KK++ NSE K L I R VMPCFYIY+ EP SKD +S C N+SSLS+ ++D+H +EE + E+YEYD+AL ADRTY KFKK LDA PEQC RY+ GGKPLL T E+ + G+C LCG R FE+QLMPPL+Y L E DD K +LENWNW+T ++YTCSKSC +S +EE G W V EE VLVQ +K L + + Y S +T Sbjct: 85 SWRAICIQRSCEEKE--SNSTCCDMGMAATPSVSAGENNWWNGLDENDEDMDLEELG-RALAEAATVTSNSKKLNRQENSEEVAKFYPPGGLIEITYLR-----IAVMPCFYIYTLEEPYSKDATSACLNYSSLSI-----NVDNHVREEVLDEESYEYDRALMADRTYFKFKKWLDAYPEQCLRYSNGGKPLLVTKEIGDPGRCKLCGGPRQFEMQLMPPLLYSLHEAADDSQKDALENWNWMTAIIYTCSKSCYDSQNEE---FRSGDWIVAEEAVLVQCEKSLKQAVLDYISHYT 366 HSP 2 Score: 114.39 bits (285), Expect = 6.358e-24 Identity = 49/86 (56.98%), Postives = 63/86 (73.26%), Query Frame = 2 Query: 101 LPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358 +P PWA DNR+ SDHYT KIGGLPDWP P+ + + + C+ CG+KLCLV QV P++SG L +EDR+L +F C+ P CGSSPL Sbjct: 1 MPRPWANDNRKASDHYTAKIGGLPDWPSPL--MDWGSDFLKCSICGNKLCLVRQVPPPITSGNLKVEDRVLYIFGCIAPKCGSSPL 84
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: K4BSD5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g051780.2 PE=4 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 3.752e-64 Identity = 111/221 (50.23%), Postives = 151/221 (68.33%), Query Frame = 3 Query: 1080 KAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFD 1742 +A SE SL+S+ KK + R + S + R +D PV+PCFYIY++ E K +S+CS + S +K+ E D D +EETWE E+YEYD+ALNADR YLKFKK++DA PEQCFRY++GG+PLLA+ + N G C LCGA+R +E+QLMPPL+YFLQE V + K +L+NWNW+TL+VYTCS++CSN + W V EE V+VQ++ Sbjct: 150 RALSEAASLASQSKKQNHGRK---LTAKTSSPVCADRVIDKKLPVVPCFYIYAEEEKLPKKDASVCSKNISSPIKDHESDPDT--KEETWEVEDYEYDRALNADRVYLKFKKRVDAYPEQCFRYSYGGRPLLASEDAGNPGMCRLCGAARQYEMQLMPPLLYFLQEAVSEKEKHALDNWNWMTLIVYTCSQNCSNDNTSDDG------WTVAEEVVVVQYE 359 HSP 2 Score: 102.834 bits (255), Expect = 3.260e-20 Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 2 Query: 101 LPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSS 352 +PG WA + E +DHYTTKIGGLPDWP+P+ + + L C+ C S L L+AQVYAP+S +LNIE+R++ VF C+ P CGSS Sbjct: 1 MPGTWAGNMHEAADHYTTKIGGLPDWPIPLPSASVD--LFKCSACRSDLSLLAQVYAPISHKSLNIEERVIYVFCCLMPECGSS 82
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: M1D340_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031208 PE=4 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 6.832e-64 Identity = 110/221 (49.77%), Postives = 151/221 (68.33%), Query Frame = 3 Query: 1080 KAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFD 1742 +A SE SL+S+ KK + R + S + R +D PV+PCFYIY++ E SK +S+CS + S +K+ E D D +EETWE E+YEYD+ALNADR YLKFKK++DA PEQCFRY++GGKPLLA+ + + G C LCGA+R +E+QLMPPL+YFLQE V + +L+NWNW+TL+VYTCS++CSN + W + EE V+VQ++ Sbjct: 159 RALSEAASLASQSKKQNHGRKLTAKIS---SPVCADRVIDKKLPVIPCFYIYAEEEKFSKKDASVCSKNISSPIKDHESDPD--SKEETWEVEDYEYDRALNADRIYLKFKKRVDAYPEQCFRYSYGGKPLLASGDAGDPGMCRLCGAARQYEMQLMPPLLYFLQEAVSEKENHALDNWNWMTLIVYTCSQNCSNDNSSDDG------WTLAEEAVVVQYE 368 HSP 2 Score: 108.997 bits (271), Expect = 3.882e-22 Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 2 Query: 80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSS 352 M V LG+PG WA E +DHYTTKIGGLPDWP+P+ + + L C+ C S L L+AQVYAP+S +LNIE+R++ VF C+ P CGS+ Sbjct: 1 MGGVFLGMPGTWAGHMHEAADHYTTKIGGLPDWPIPLPSASVD--LFKCSSCKSDLSLLAQVYAPISHKSLNIEERVIYVFGCLMPECGST 89
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: A0A059B7U1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04861 PE=4 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 8.968e-64 Identity = 110/191 (57.59%), Postives = 135/191 (70.68%), Query Frame = 3 Query: 1215 MPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYFS*FT 1787 MPCFYIY+ EP SKD +S C N+SSLSV ++D+H +EE + E+YEYD+AL ADRTY KFKK LDA PEQC RY+ GGKPLLAT E+ + G+C LCG R FE+QLMPPL+YFL E DD K +LE WNW+T + YTCSKSC +S +EE G G W V EE VLVQ +K L + + Y S +T Sbjct: 1 MPCFYIYTLEEPYSKDATSACLNYSSLSV-----NVDNHVREEVLDEESYEYDRALMADRTYFKFKKWLDAYPEQCLRYSNGGKPLLATKEIGDPGRCKLCGGPRQFEMQLMPPLLYFLHEAADDAQKDALEKWNWMTAIKYTCSKSCYDSQNEE--FRG-GDWIVAEEAVLVQCEKSLKQAVLDYISHYT 183
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: A0A087GE70_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G481700 PE=4 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 1.761e-63 Identity = 147/305 (48.20%), Postives = 191/305 (62.62%), Query Frame = 3 Query: 870 CFFLPCALRLRQSWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSE----VTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDT----DTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKE-GDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEE-VDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLN 1754 C C QSWRA IQK E K SS A L P S + SKT+W +++ +D+ED D E L+KA +E V S S + K S +S G L ++TR D V+PCFYIY++ E SKD + N SS+S+K++E G+ + EE WE E YEYDKALNADRTYLKFKK+LDA+PEQCFRY++GGKPLLAT ++ + KC C + FE+QLMPPLIYFL E VD+ K SL+NW+W+TL+VYTCSKSC+N +++G G W V EE V VQ++ P+N Sbjct: 72 CLMPKCGTS-EQSWRAFSIQKSTKE-KESSEVADL---PVVSPLDTASKTHWLDDVDGDDDEDFDFESLAKAIAEAATTVASNSKKQNKKPSGNDSSGTKARPSPLKSETRVADRVKVETGAVVPCFYIYTKTENVSKDVDRLSVNCSSMSIKDREMGNNHESETEEAWEDEKYEYDKALNADRTYLKFKKRLDANPEQCFRYSYGGKPLLATEDLKSPDKCRHCDSPMLFEMQLMPPLIYFLHEAVVDEGLKQSLDNWDWMTLIVYTCSKSCAN------AVNG-GDWVVTEECVAVQYENPMN 364 HSP 2 Score: 102.834 bits (255), Expect = 3.570e-20 Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 2 Query: 80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSS 352 M ++LGLPG WAED E SDHYTTKIGGLPDWP P L++C CG++L LVAQVYAP+ ++++R L +F C+ P CG+S Sbjct: 1 MVGILLGLPGQWAEDELESSDHYTTKIGGLPDWP------PLRPQLLNCCSCGARLSLVAQVYAPI-----DMKERTLYIFGCLMPKCGTS 80
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: V4MJ35_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10004393mg PE=4 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 6.143e-63 Identity = 150/305 (49.18%), Postives = 193/305 (63.28%), Query Frame = 3 Query: 870 CFFLPCALRLRQSWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEV-TSLSSEPKKIS---SNRNSEGAVKHSLSLIAQTRGVDT----DTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKE-GDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCH-KGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLN 1754 C +P QSWRA +QK + K SS A L AS P + SKT+W + +D+ED DLE L+KA +E TS +S KK S S S G L ++TR VD V+PCFYIY++ E SKD N+SS+S+KEKE + D+ EE WE E YEYDKALNADRTYLKFKK+LDA+PEQCFRY++GGKP+LAT ++ + KCG C + FE+QLMPPLIYFL E V D K SL+NW+W+TL+VYTCSKSC+N+ ++ W V EE + VQ++KP+N Sbjct: 81 CCLMPKCGTSEQSWRAFSVQKA-MQVKESSEIADL---SVASPPDTTSKTDWLDEEDGDDDEDFDLESLAKAIAEAGTSAASNSKKQSKKPSGNASSGTKAKPSPLKSETRVVDQMKVETGVVVPCFYIYTKEENVSKDVDRFSMNYSSMSIKEKETSNGDESETEEAWENETYEYDKALNADRTYLKFKKRLDANPEQCFRYSYGGKPVLATEDLKSPDKCGHCDSPMIFEMQLMPPLIYFLHEGVVDKELKQSLDNWDWMTLIVYTCSKSCANAVND--------NWVVAEECIAVQYEKPMN 373 HSP 2 Score: 114.005 bits (284), Expect = 1.029e-23 Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = 2 Query: 80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDW-PLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSS 352 M ++LGLPG WAED E SDHYTTKIGGLPDW PLP L+ P +++C CGS+L LVAQVYAP+S+ +I++R L +F C+ P CG+S Sbjct: 1 MVGILLGLPGDWAEDELESSDHYTTKIGGLPDWPPLPDHTLR--PEILNCCSCGSRLSLVAQVYAPISTENSDIKERTLYIFCCLMPKCGTS 90
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: R0GMI8_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10026577mg PE=4 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 7.445e-63 Identity = 131/302 (43.38%), Postives = 182/302 (60.26%), Query Frame = 3 Query: 870 CFFLPCALRLRQSWRALRIQKVENESKVS-----SSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQ-EETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEE-VDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLN 1754 C C QSWRA + K E +VS A+ LD A W + D+++ D + + A + T S+ K+ SS ++ + S + +A V+T PV+PCFYIY++ E SK+ N+SSLS+K++E +D G+ EE WE E YEYDKALNADRTYLKFKK+LDA+PEQCFRY++GGKP+LAT ++ + C C RHFE+QLMPPLI+FL E VD K SL+NW+W+TL+VYTCSK+C+N+ + G+W V E + VQ++KP+N Sbjct: 97 CLMPKCGTS-EQSWRAFSVHKAIKEKEVSEIADLPVASPLDSASKTH----------WLDDDDDEDFDFENLAKAIAEASTTVASNSKKQKSSGTKAKPSPSKSETRVADQINVETG-PVVPCFYIYTKEEMPSKEVDRFSKNYSSLSMKDRENGNNDEGESEEVWEDEKYEYDKALNADRTYLKFKKRLDANPEQCFRYSYGGKPILATEDLKSPDNCRNCDCPRHFEMQLMPPLIFFLHEGVVDKGLKQSLDNWDWMTLIVYTCSKNCANAVN--------GEWVVAEACLAVQYEKPMN 378 HSP 2 Score: 117.087 bits (292), Expect = 9.407e-25 Identity = 56/92 (60.87%), Postives = 70/92 (76.09%), Query Frame = 2 Query: 80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWP-LPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSS 352 M +LGLPG WAE+ E SDHYTTKIGGLPDWP +P +AL+ P L++C CGSKL LVAQVYAPVS+ T +I++R L +F C+ P CG+S Sbjct: 16 MVGTLLGLPGQWAEEELESSDHYTTKIGGLPDWPPIPDDALR--PELLNCCSCGSKLSLVAQVYAPVSTETSDIQERTLYIFGCLMPKCGTS 105
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: B9DH89_ARATH (AT5G64830 protein OS=Arabidopsis thaliana GN=At5g64830 PE=2 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 3.797e-62 Identity = 107/183 (58.47%), Postives = 135/183 (73.77%), Query Frame = 3 Query: 1212 VMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEK-EGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEE-VDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLN 1754 V+PCFYIY++ E SK+ N+SSLS+K+K G+ D+ EE WE E YEYDKALNADRTYLKFKK+LDA+PEQCFRY +GGKP+LAT ++ + KC C + RHFE+QLMPPLIYFL E VD K SL+NW+W+TL+VYTCSKSC+N+ + G W V EE V VQ++KP+N Sbjct: 115 VVPCFYIYTKEEIPSKEVDRFSQNYSSLSIKDKGTGNNDESESEEKWEDEKYEYDKALNADRTYLKFKKRLDANPEQCFRYWYGGKPILATEDMKSPDKCRNCDSQRHFEIQLMPPLIYFLHEGVVDKGIKQSLDNWDWMTLIVYTCSKSCANAVN--------GDWVVTEECVAVQYEKPMN 289
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: PDD2L_CHICK (Programmed cell death protein 2-like OS=Gallus gallus GN=PDCD2L PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 4.600e-15 Identity = 62/194 (31.96%), Postives = 99/194 (51.03%), Query Frame = 3 Query: 1110 SEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKE---KEGDIDDHGQEETWEAEN----YEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLAT---AEVDNA-GKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSC 1658 SE +S + N++ ++ + + T PV +YI E F + ++H++ +KE +EG +H E++ E+ YE K + D T+ KF K++ PEQ RY++GG+PL T A DN+ C CG++R FE QLMP L+ L + D S+E + T++VYTC +SC Sbjct: 177 SEAADVSGSLNTDLLLREEMVMA-------TSAPVFHSYYISVVDEADYAGF--LDTDHANKLLKEYQQREGVDLEHLMSESFAGEDSNEKYEKTKVRSGDHTFHKFMKRISVCPEQILRYSWGGQPLFITCPPANFDNSIPACSNCGSNRVFEFQLMPALVSMLWGDADL----SVE---FGTVIVYTCERSC 354
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: TSR4_SCHPO (Probable 20S rRNA accumulation protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25H2.15 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.353e-12 Identity = 43/128 (33.59%), Postives = 66/128 (51.56%), Query Frame = 3 Query: 1341 ETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAE---------VDNAGK-----CGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEK 1682 E WE E+YE ++ ++T+ F +++ +P QC RY GG PLLA+ V N GK C LC + R FE+QLMP I L +E+ + W T++V TCS C+ ++++ Sbjct: 267 EAWEKESYEKSPSV-YEKTFRLFSEKISHNPTQCLRYERGGTPLLASGRDKLGQQLKSVTNFGKSPVPLCPLCKSPRLFEMQLMPHAISILNDEIAE----------WSTILVATCSMDCNPPINKDR 383
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: PDD2L_HUMAN (Programmed cell death protein 2-like OS=Homo sapiens GN=PDCD2L PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.797e-12 Identity = 53/170 (31.18%), Postives = 81/170 (47.65%), Query Frame = 3 Query: 1170 SLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLS-VKEKEGDIDDHGQEETWEA---ENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLL---ATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSC 1658 +++ V P+ +YI E +DF ++ HS L +++EG D ++ E YE + D+T+ KF K++ A EQ RY++ G+PL T+EV C CG R FE QLMP L+ L+ + G + T++VYTC KSC Sbjct: 170 AVLGAAHPVPPGLPLFLPYYICVADEDDYRDFVNLDHAHSLLRDYQQREGIAMDQLLSQSLPNDGDEKYEKTIIKSGDQTFYKFMKRIAACQEQILRYSWSGEPLFLTCPTSEVTELPACSQCGGQRIFEFQLMPALVSMLKSA----NLGLSVEFG--TILVYTCEKSC 333
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: PDD2L_MOUSE (Programmed cell death protein 2-like OS=Mus musculus GN=Pdcd2l PE=2 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.237e-9 Identity = 38/104 (36.54%), Postives = 52/104 (50.00%), Query Frame = 3 Query: 1356 ENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLL---ATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSC 1658 E YE + D T+ +F K++ A EQ RY++ G+PL T EV C CG R FE QLMP L+ L + G + T++VYTC +SC Sbjct: 242 EKYEKTTVSSGDPTFYRFMKRIAACQEQILRYSWSGEPLFLSCPTFEVSEVPACSGCGGQRTFEFQLMPALVSMLSSA----NLGLAVEFG--TILVYTCKQSC 339
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: TSR4_YEAST (20S rRNA accumulation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR4 PE=1 SV=2) HSP 1 Score: 61.6178 bits (148), Expect = 1.283e-8 Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 3 Query: 1389 DRTYLKFKKQLDASPEQCFRYAFGGKPLL-ATAEVDNAGKCGLCG----ASRHFELQLMPPLIYFLQEEVDDCHKGSLEN-WNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQ 1736 D T+ KF++ + +P Q RY GGKPLL A +VD G + R FE+QLMP +I+ L+E V S++N W T++V+T ++ FDE HG G VEE V VQ Sbjct: 295 DDTFQKFQEVVGYNPLQVLRYDLGGKPLLYAETKVDILSTVPRPGYNPSSQRIFEMQLMPKMIFDLEEVV------SVDNGMEWGTILVFTDVENYMPEFDE----HGVG---YVEECVKVQ 403
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: PDCD2_BOVIN (Programmed cell death protein 2 OS=Bos taurus GN=PDCD2 PE=2 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 7.635e-7 Identity = 33/94 (35.11%), Postives = 48/94 (51.06%), Query Frame = 3 Query: 1389 DRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGK----CGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSC 1658 DR + KFK ++ PEQ RY G PL + E K C CGA R FE Q+MP L+ +L+ + + +W L ++TC++SC Sbjct: 238 DRIFRKFKTKISLEPEQILRYGRGIAPLWISGENTPKEKDIPDCP-CGAKRLFEFQVMPQLLNYLKADRLG------RSVDWGVLAIFTCAESC 324 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 6
InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
Sequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0001178 ID=g.raimondii_cottongen_reftransV1_0001178; Name=g.raimondii_cottongen_reftransV1_0001178; organism=Gossypium raimondii; type=contig; length=2238bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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