g.raimondii_cottongen_reftransV1_0001178, g.raimondii_cottongen_reftransV1_0001178 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0001178
Unique Nameg.raimondii_cottongen_reftransV1_0001178
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length2238
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07chromosomeg.raimondii_cottongen_reftransV1_0001178:1..2238 .
Chr07:36481152..36485062 +
n/a
Homology
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: A0A0A0K8S8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014680 PE=4 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.677e-72
Identity = 152/284 (53.52%), Postives = 192/284 (67.61%), Query Frame = 3
Query:  909 WRALRIQKVENE--SKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLN 1754
            WR LR+QK  ++  SKVS     L      ++  S +KTNWWE L +E +E++DLE+L KAFS+V +  S  K+  S  +S+   K   S    TR VD  TPV+PCFYIY++ EPSSKD S MCSN++SLS+KE + D +D  QEE W  E YE+DKAL ADRTYLKFKK+LDA PEQC RY+FGGKP+LA +E   AGKC  CG SR FE+QLMPPL+YFLQE  D+  K  LE WNW+TL+V+TCS+SCS S          G W + EE+ +VQ +KP N
Sbjct:   91 WRVLRVQKSCDKEFSKVSQEIGPL------TTSTSAAKTNWWEQLDEESDEEMDLEELQKAFSDVATKVSHAKETPSKSHSKTVTKSLTS--RPTRVVDVKTPVVPCFYIYTEDEPSSKDIS-MCSNYASLSLKENQSDEEDSIQEEKWSEEGYEHDKALTADRTYLKFKKKLDAYPEQCLRYSFGGKPILARSEDGEAGKCKACGGSRQFEMQLMPPLLYFLQEAADESQKQLLETWNWMTLLVHTCSESCSQS----SEKSDDGNWIITEESTIVQLEKPFN 361          

HSP 2 Score: 125.176 bits (313), Expect = 1.944e-27
Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 2
Query:   80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358
            M  V+LGLPGPWA+DN E SDHYTTK+GG+PD P        N +L+ C+QCGSKLCLV Q+YAPVS    NI++R LLVF C+TP CGSS L
Sbjct:    1 MGAVILGLPGPWADDNLELSDHYTTKVGGIPDLPFQ----NVNHSLLDCSQCGSKLCLVLQIYAPVSIDRTNIDERFLLVFGCLTPECGSSSL 89          
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: M5WBD5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007320mg PE=4 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.756e-71
Identity = 115/194 (59.28%), Postives = 148/194 (76.29%), Query Frame = 3
Query: 1194 VDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYF 1775
            VD + PV+PCFYIY+Q EPSSK+ +S+CS +SSLS+ ++  + +DH Q+ETW  E YEYDKAL ADRTYLKFKK+LDA PEQCFRY++GGKPLLA++   + GKC LCG SR +E+QLMPP++YF+QE  DD  + SLENWNW+TL+VYTCSKSCS   +E KS    G W V EE V+VQ +K  +   +R +
Sbjct:  181 VDINKPVVPCFYIYTQEEPSSKNLTSLCSKYSSLSIAKEGNNDEDHVQDETWAEEAYEYDKALTADRTYLKFKKRLDAYPEQCFRYSYGGKPLLASSTEGDPGKCRLCGGSRQYEMQLMPPVLYFVQEAADDYQRPSLENWNWMTLMVYTCSKSCSQ-HNEGKS--SKGNWLVTEEAVVVQVEKSFHGLAERGY 371          

HSP 2 Score: 135.576 bits (340), Expect = 4.677e-31
Identity = 61/93 (65.59%), Postives = 75/93 (80.65%), Query Frame = 2
Query:   80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358
            M+ V+LG+PGPWA+D RE SDHYTTKIGGLPDWPLP +++   P L+ C+ CGSKL LVAQVYAP+SS  L IE+R+L VF C+ P CGS+PL
Sbjct:    1 MAAVLLGMPGPWADDYREQSDHYTTKIGGLPDWPLPEKSV--TPDLLECSACGSKLSLVAQVYAPISSKNLKIEERVLFVFGCLMPKCGSTPL 91          
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: A0A059B829_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04852 PE=4 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.380e-66
Identity = 138/298 (46.31%), Postives = 182/298 (61.07%), Query Frame = 3
Query:  906 SWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKH----SLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYFS*FT 1787
            SWRA+ IQ+   E +  S++   D   +A+  VS  + NWW  L + D +    E   +A +E  +++S  KK++   NSE   K      L  I   R       VMPCFYIY+  EP SKD +S C N+SSLS+     ++D+H +EE  + E+YEYD+AL ADRTY KFKK LDA PEQC RY+ GGKPLL T E+ + G+C LCG  R FE+QLMPPL+Y L E  DD  K +LENWNW+T ++YTCSKSC +S +EE      G W V EE VLVQ +K L + +  Y S +T
Sbjct:   85 SWRAICIQRSCEEKE--SNSTCCDMGMAATPSVSAGENNWWNGLDENDEDMDLEELG-RALAEAATVTSNSKKLNRQENSEEVAKFYPPGGLIEITYLR-----IAVMPCFYIYTLEEPYSKDATSACLNYSSLSI-----NVDNHVREEVLDEESYEYDRALMADRTYFKFKKWLDAYPEQCLRYSNGGKPLLVTKEIGDPGRCKLCGGPRQFEMQLMPPLLYSLHEAADDSQKDALENWNWMTAIIYTCSKSCYDSQNEE---FRSGDWIVAEEAVLVQCEKSLKQAVLDYISHYT 366          

HSP 2 Score: 114.39 bits (285), Expect = 6.358e-24
Identity = 49/86 (56.98%), Postives = 63/86 (73.26%), Query Frame = 2
Query:  101 LPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSSPL 358
            +P PWA DNR+ SDHYT KIGGLPDWP P+  + +    + C+ CG+KLCLV QV  P++SG L +EDR+L +F C+ P CGSSPL
Sbjct:    1 MPRPWANDNRKASDHYTAKIGGLPDWPSPL--MDWGSDFLKCSICGNKLCLVRQVPPPITSGNLKVEDRVLYIFGCIAPKCGSSPL 84          
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: K4BSD5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g051780.2 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 3.752e-64
Identity = 111/221 (50.23%), Postives = 151/221 (68.33%), Query Frame = 3
Query: 1080 KAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFD 1742
            +A SE  SL+S+ KK +  R        + S +   R +D   PV+PCFYIY++ E   K  +S+CS + S  +K+ E D D   +EETWE E+YEYD+ALNADR YLKFKK++DA PEQCFRY++GG+PLLA+ +  N G C LCGA+R +E+QLMPPL+YFLQE V +  K +L+NWNW+TL+VYTCS++CSN    +        W V EE V+VQ++
Sbjct:  150 RALSEAASLASQSKKQNHGRK---LTAKTSSPVCADRVIDKKLPVVPCFYIYAEEEKLPKKDASVCSKNISSPIKDHESDPDT--KEETWEVEDYEYDRALNADRVYLKFKKRVDAYPEQCFRYSYGGRPLLASEDAGNPGMCRLCGAARQYEMQLMPPLLYFLQEAVSEKEKHALDNWNWMTLIVYTCSQNCSNDNTSDDG------WTVAEEVVVVQYE 359          

HSP 2 Score: 102.834 bits (255), Expect = 3.260e-20
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 2
Query:  101 LPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSS 352
            +PG WA +  E +DHYTTKIGGLPDWP+P+ +   +  L  C+ C S L L+AQVYAP+S  +LNIE+R++ VF C+ P CGSS
Sbjct:    1 MPGTWAGNMHEAADHYTTKIGGLPDWPIPLPSASVD--LFKCSACRSDLSLLAQVYAPISHKSLNIEERVIYVFCCLMPECGSS 82          
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: M1D340_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031208 PE=4 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 6.832e-64
Identity = 110/221 (49.77%), Postives = 151/221 (68.33%), Query Frame = 3
Query: 1080 KAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFD 1742
            +A SE  SL+S+ KK +  R     +    S +   R +D   PV+PCFYIY++ E  SK  +S+CS + S  +K+ E D D   +EETWE E+YEYD+ALNADR YLKFKK++DA PEQCFRY++GGKPLLA+ +  + G C LCGA+R +E+QLMPPL+YFLQE V +    +L+NWNW+TL+VYTCS++CSN    +        W + EE V+VQ++
Sbjct:  159 RALSEAASLASQSKKQNHGRKLTAKIS---SPVCADRVIDKKLPVIPCFYIYAEEEKFSKKDASVCSKNISSPIKDHESDPD--SKEETWEVEDYEYDRALNADRIYLKFKKRVDAYPEQCFRYSYGGKPLLASGDAGDPGMCRLCGAARQYEMQLMPPLLYFLQEAVSEKENHALDNWNWMTLIVYTCSQNCSNDNSSDDG------WTLAEEAVVVQYE 368          

HSP 2 Score: 108.997 bits (271), Expect = 3.882e-22
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 2
Query:   80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSS 352
            M  V LG+PG WA    E +DHYTTKIGGLPDWP+P+ +   +  L  C+ C S L L+AQVYAP+S  +LNIE+R++ VF C+ P CGS+
Sbjct:    1 MGGVFLGMPGTWAGHMHEAADHYTTKIGGLPDWPIPLPSASVD--LFKCSSCKSDLSLLAQVYAPISHKSLNIEERVIYVFGCLMPECGST 89          
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: A0A059B7U1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04861 PE=4 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 8.968e-64
Identity = 110/191 (57.59%), Postives = 135/191 (70.68%), Query Frame = 3
Query: 1215 MPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLNECLQRYFS*FT 1787
            MPCFYIY+  EP SKD +S C N+SSLSV     ++D+H +EE  + E+YEYD+AL ADRTY KFKK LDA PEQC RY+ GGKPLLAT E+ + G+C LCG  R FE+QLMPPL+YFL E  DD  K +LE WNW+T + YTCSKSC +S +EE    G G W V EE VLVQ +K L + +  Y S +T
Sbjct:    1 MPCFYIYTLEEPYSKDATSACLNYSSLSV-----NVDNHVREEVLDEESYEYDRALMADRTYFKFKKWLDAYPEQCLRYSNGGKPLLATKEIGDPGRCKLCGGPRQFEMQLMPPLLYFLHEAADDAQKDALEKWNWMTAIKYTCSKSCYDSQNEE--FRG-GDWIVAEEAVLVQCEKSLKQAVLDYISHYT 183          
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: A0A087GE70_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G481700 PE=4 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 1.761e-63
Identity = 147/305 (48.20%), Postives = 191/305 (62.62%), Query Frame = 3
Query:  870 CFFLPCALRLRQSWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSE----VTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDT----DTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKE-GDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEE-VDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLN 1754
            C    C     QSWRA  IQK   E K SS  A L   P  S   + SKT+W +++  +D+ED D E L+KA +E    V S S +  K  S  +S G       L ++TR  D        V+PCFYIY++ E  SKD   +  N SS+S+K++E G+  +   EE WE E YEYDKALNADRTYLKFKK+LDA+PEQCFRY++GGKPLLAT ++ +  KC  C +   FE+QLMPPLIYFL E  VD+  K SL+NW+W+TL+VYTCSKSC+N      +++G G W V EE V VQ++ P+N
Sbjct:   72 CLMPKCGTS-EQSWRAFSIQKSTKE-KESSEVADL---PVVSPLDTASKTHWLDDVDGDDDEDFDFESLAKAIAEAATTVASNSKKQNKKPSGNDSSGTKARPSPLKSETRVADRVKVETGAVVPCFYIYTKTENVSKDVDRLSVNCSSMSIKDREMGNNHESETEEAWEDEKYEYDKALNADRTYLKFKKRLDANPEQCFRYSYGGKPLLATEDLKSPDKCRHCDSPMLFEMQLMPPLIYFLHEAVVDEGLKQSLDNWDWMTLIVYTCSKSCAN------AVNG-GDWVVTEECVAVQYENPMN 364          

HSP 2 Score: 102.834 bits (255), Expect = 3.570e-20
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 2
Query:   80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWPLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSS 352
            M  ++LGLPG WAED  E SDHYTTKIGGLPDWP         P L++C  CG++L LVAQVYAP+     ++++R L +F C+ P CG+S
Sbjct:    1 MVGILLGLPGQWAEDELESSDHYTTKIGGLPDWP------PLRPQLLNCCSCGARLSLVAQVYAPI-----DMKERTLYIFGCLMPKCGTS 80          
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: V4MJ35_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10004393mg PE=4 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 6.143e-63
Identity = 150/305 (49.18%), Postives = 193/305 (63.28%), Query Frame = 3
Query:  870 CFFLPCALRLRQSWRALRIQKVENESKVSSSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEV-TSLSSEPKKIS---SNRNSEGAVKHSLSLIAQTRGVDT----DTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKE-GDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCH-KGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLN 1754
            C  +P      QSWRA  +QK   + K SS  A L     AS P + SKT+W +    +D+ED DLE L+KA +E  TS +S  KK S   S   S G       L ++TR VD        V+PCFYIY++ E  SKD      N+SS+S+KEKE  + D+   EE WE E YEYDKALNADRTYLKFKK+LDA+PEQCFRY++GGKP+LAT ++ +  KCG C +   FE+QLMPPLIYFL E V D   K SL+NW+W+TL+VYTCSKSC+N+ ++         W V EE + VQ++KP+N
Sbjct:   81 CCLMPKCGTSEQSWRAFSVQKA-MQVKESSEIADL---SVASPPDTTSKTDWLDEEDGDDDEDFDLESLAKAIAEAGTSAASNSKKQSKKPSGNASSGTKAKPSPLKSETRVVDQMKVETGVVVPCFYIYTKEENVSKDVDRFSMNYSSMSIKEKETSNGDESETEEAWENETYEYDKALNADRTYLKFKKRLDANPEQCFRYSYGGKPVLATEDLKSPDKCGHCDSPMIFEMQLMPPLIYFLHEGVVDKELKQSLDNWDWMTLIVYTCSKSCANAVND--------NWVVAEECIAVQYEKPMN 373          

HSP 2 Score: 114.005 bits (284), Expect = 1.029e-23
Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = 2
Query:   80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDW-PLPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSS 352
            M  ++LGLPG WAED  E SDHYTTKIGGLPDW PLP   L+  P +++C  CGS+L LVAQVYAP+S+   +I++R L +F C+ P CG+S
Sbjct:    1 MVGILLGLPGDWAEDELESSDHYTTKIGGLPDWPPLPDHTLR--PEILNCCSCGSRLSLVAQVYAPISTENSDIKERTLYIFCCLMPKCGTS 90          
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: R0GMI8_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10026577mg PE=4 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 7.445e-63
Identity = 131/302 (43.38%), Postives = 182/302 (60.26%), Query Frame = 3
Query:  870 CFFLPCALRLRQSWRALRIQKVENESKVS-----SSAATLDXXXXXXXXXXXXXTNWWXXXXXXXXXXXXXXXXXKAFSEVTSLSSEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEKEGDIDDHGQ-EETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEE-VDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLN 1754
            C    C     QSWRA  + K   E +VS       A+ LD A              W +  D+++ D +    + A +  T  S+  K+ SS   ++ +   S + +A    V+T  PV+PCFYIY++ E  SK+      N+SSLS+K++E   +D G+ EE WE E YEYDKALNADRTYLKFKK+LDA+PEQCFRY++GGKP+LAT ++ +   C  C   RHFE+QLMPPLI+FL E  VD   K SL+NW+W+TL+VYTCSK+C+N+ +        G+W V E  + VQ++KP+N
Sbjct:   97 CLMPKCGTS-EQSWRAFSVHKAIKEKEVSEIADLPVASPLDSASKTH----------WLDDDDDEDFDFENLAKAIAEASTTVASNSKKQKSSGTKAKPSPSKSETRVADQINVETG-PVVPCFYIYTKEEMPSKEVDRFSKNYSSLSMKDRENGNNDEGESEEVWEDEKYEYDKALNADRTYLKFKKRLDANPEQCFRYSYGGKPILATEDLKSPDNCRNCDCPRHFEMQLMPPLIFFLHEGVVDKGLKQSLDNWDWMTLIVYTCSKNCANAVN--------GEWVVAEACLAVQYEKPMN 378          

HSP 2 Score: 117.087 bits (292), Expect = 9.407e-25
Identity = 56/92 (60.87%), Postives = 70/92 (76.09%), Query Frame = 2
Query:   80 MSRVVLGLPGPWAEDNREPSDHYTTKIGGLPDWP-LPIEALKFNPTLIHCTQCGSKLCLVAQVYAPVSSGTLNIEDRLLLVFACVTPNCGSS 352
            M   +LGLPG WAE+  E SDHYTTKIGGLPDWP +P +AL+  P L++C  CGSKL LVAQVYAPVS+ T +I++R L +F C+ P CG+S
Sbjct:   16 MVGTLLGLPGQWAEEELESSDHYTTKIGGLPDWPPIPDDALR--PELLNCCSCGSKLSLVAQVYAPVSTETSDIQERTLYIFGCLMPKCGTS 105          
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Match: B9DH89_ARATH (AT5G64830 protein OS=Arabidopsis thaliana GN=At5g64830 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.797e-62
Identity = 107/183 (58.47%), Postives = 135/183 (73.77%), Query Frame = 3
Query: 1212 VMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKEK-EGDIDDHGQEETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEE-VDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQFDKPLN 1754
            V+PCFYIY++ E  SK+      N+SSLS+K+K  G+ D+   EE WE E YEYDKALNADRTYLKFKK+LDA+PEQCFRY +GGKP+LAT ++ +  KC  C + RHFE+QLMPPLIYFL E  VD   K SL+NW+W+TL+VYTCSKSC+N+ +        G W V EE V VQ++KP+N
Sbjct:  115 VVPCFYIYTKEEIPSKEVDRFSQNYSSLSIKDKGTGNNDESESEEKWEDEKYEYDKALNADRTYLKFKKRLDANPEQCFRYWYGGKPILATEDMKSPDKCRNCDSQRHFEIQLMPPLIYFLHEGVVDKGIKQSLDNWDWMTLIVYTCSKSCANAVN--------GDWVVTEECVAVQYEKPMN 289          
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: PDD2L_CHICK (Programmed cell death protein 2-like OS=Gallus gallus GN=PDCD2L PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.600e-15
Identity = 62/194 (31.96%), Postives = 99/194 (51.03%), Query Frame = 3
Query: 1110 SEPKKISSNRNSEGAVKHSLSLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLSVKE---KEGDIDDHGQEETWEAEN----YEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLAT---AEVDNA-GKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSC 1658
            SE   +S + N++  ++  + +        T  PV   +YI    E     F  + ++H++  +KE   +EG   +H   E++  E+    YE  K  + D T+ KF K++   PEQ  RY++GG+PL  T   A  DN+   C  CG++R FE QLMP L+  L  + D     S+E   + T++VYTC +SC
Sbjct:  177 SEAADVSGSLNTDLLLREEMVMA-------TSAPVFHSYYISVVDEADYAGF--LDTDHANKLLKEYQQREGVDLEHLMSESFAGEDSNEKYEKTKVRSGDHTFHKFMKRISVCPEQILRYSWGGQPLFITCPPANFDNSIPACSNCGSNRVFEFQLMPALVSMLWGDADL----SVE---FGTVIVYTCERSC 354          
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: TSR4_SCHPO (Probable 20S rRNA accumulation protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25H2.15 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.353e-12
Identity = 43/128 (33.59%), Postives = 66/128 (51.56%), Query Frame = 3
Query: 1341 ETWEAENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLLATAE---------VDNAGK-----CGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSCSNSFDEEK 1682
            E WE E+YE   ++  ++T+  F +++  +P QC RY  GG PLLA+           V N GK     C LC + R FE+QLMP  I  L +E+ +          W T++V TCS  C+   ++++
Sbjct:  267 EAWEKESYEKSPSV-YEKTFRLFSEKISHNPTQCLRYERGGTPLLASGRDKLGQQLKSVTNFGKSPVPLCPLCKSPRLFEMQLMPHAISILNDEIAE----------WSTILVATCSMDCNPPINKDR 383          
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: PDD2L_HUMAN (Programmed cell death protein 2-like OS=Homo sapiens GN=PDCD2L PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.797e-12
Identity = 53/170 (31.18%), Postives = 81/170 (47.65%), Query Frame = 3
Query: 1170 SLIAQTRGVDTDTPVMPCFYIYSQAEPSSKDFSSMCSNHSSLS-VKEKEGDIDDHGQEETWEA---ENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLL---ATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSC 1658
            +++     V    P+   +YI    E   +DF ++   HS L   +++EG   D    ++      E YE     + D+T+ KF K++ A  EQ  RY++ G+PL     T+EV     C  CG  R FE QLMP L+  L+      + G    +   T++VYTC KSC
Sbjct:  170 AVLGAAHPVPPGLPLFLPYYICVADEDDYRDFVNLDHAHSLLRDYQQREGIAMDQLLSQSLPNDGDEKYEKTIIKSGDQTFYKFMKRIAACQEQILRYSWSGEPLFLTCPTSEVTELPACSQCGGQRIFEFQLMPALVSMLKSA----NLGLSVEFG--TILVYTCEKSC 333          
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: PDD2L_MOUSE (Programmed cell death protein 2-like OS=Mus musculus GN=Pdcd2l PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.237e-9
Identity = 38/104 (36.54%), Postives = 52/104 (50.00%), Query Frame = 3
Query: 1356 ENYEYDKALNADRTYLKFKKQLDASPEQCFRYAFGGKPLL---ATAEVDNAGKCGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSC 1658
            E YE     + D T+ +F K++ A  EQ  RY++ G+PL     T EV     C  CG  R FE QLMP L+  L       + G    +   T++VYTC +SC
Sbjct:  242 EKYEKTTVSSGDPTFYRFMKRIAACQEQILRYSWSGEPLFLSCPTFEVSEVPACSGCGGQRTFEFQLMPALVSMLSSA----NLGLAVEFG--TILVYTCKQSC 339          
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: TSR4_YEAST (20S rRNA accumulation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR4 PE=1 SV=2)

HSP 1 Score: 61.6178 bits (148), Expect = 1.283e-8
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 3
Query: 1389 DRTYLKFKKQLDASPEQCFRYAFGGKPLL-ATAEVDNAGKCGLCG----ASRHFELQLMPPLIYFLQEEVDDCHKGSLEN-WNWLTLVVYTCSKSCSNSFDEEKSIHGHGQWFVVEETVLVQ 1736
            D T+ KF++ +  +P Q  RY  GGKPLL A  +VD        G    + R FE+QLMP +I+ L+E V      S++N   W T++V+T  ++    FDE    HG G    VEE V VQ
Sbjct:  295 DDTFQKFQEVVGYNPLQVLRYDLGGKPLLYAETKVDILSTVPRPGYNPSSQRIFEMQLMPKMIFDLEEVV------SVDNGMEWGTILVFTDVENYMPEFDE----HGVG---YVEECVKVQ 403          
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Match: PDCD2_BOVIN (Programmed cell death protein 2 OS=Bos taurus GN=PDCD2 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 7.635e-7
Identity = 33/94 (35.11%), Postives = 48/94 (51.06%), Query Frame = 3
Query: 1389 DRTYLKFKKQLDASPEQCFRYAFGGKPLLATAEVDNAGK----CGLCGASRHFELQLMPPLIYFLQEEVDDCHKGSLENWNWLTLVVYTCSKSC 1658
            DR + KFK ++   PEQ  RY  G  PL  + E     K    C  CGA R FE Q+MP L+ +L+ +          + +W  L ++TC++SC
Sbjct:  238 DRIFRKFKTKISLEPEQILRYGRGIAPLWISGENTPKEKDIPDCP-CGAKRLFEFQVMPQLLNYLKADRLG------RSVDWGVLAIFTCAESC 324          
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A0K8S8_CUCSA1.677e-7253.52Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
M5WBD5_PRUPE1.756e-7159.28Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A059B829_EUCGR1.380e-6646.31Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
K4BSD5_SOLLC3.752e-6450.23Uncharacterized protein OS=Solanum lycopersicum GN... [more]
M1D340_SOLTU6.832e-6449.77Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
A0A059B7U1_EUCGR8.968e-6457.59Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A087GE70_ARAAL1.761e-6348.20Uncharacterized protein OS=Arabis alpina GN=AALP_A... [more]
V4MJ35_EUTSA6.143e-6349.18Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
R0GMI8_9BRAS7.445e-6343.38Uncharacterized protein (Fragment) OS=Capsella rub... [more]
B9DH89_ARATH3.797e-6258.47AT5G64830 protein OS=Arabidopsis thaliana GN=At5g6... [more]

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BLAST of g.raimondii_cottongen_reftransV1_0001178 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PDD2L_CHICK4.600e-1531.96Programmed cell death protein 2-like OS=Gallus gal... [more]
TSR4_SCHPO1.353e-1233.59Probable 20S rRNA accumulation protein 4 OS=Schizo... [more]
PDD2L_HUMAN1.797e-1231.18Programmed cell death protein 2-like OS=Homo sapie... [more]
PDD2L_MOUSE1.237e-936.54Programmed cell death protein 2-like OS=Mus muscul... [more]
TSR4_YEAST1.283e-838.5220S rRNA accumulation protein 4 OS=Saccharomyces c... [more]
PDCD2_BOVIN7.635e-735.11Programmed cell death protein 2 OS=Bos taurus GN=P... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007320Programmed cell death protein 2, C-terminalPFAMPF04194PDCD2_Ccoord: 114..286
e-value: 3.5E-36
score: 124.7
NoneNo IPR availablePANTHERPTHR12298PCDC2 PROGRAMMED CELL DEATH PROTEIN 2 -RELATEDcoord: 10..288

Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0001178 ID=g.raimondii_cottongen_reftransV1_0001178; Name=g.raimondii_cottongen_reftransV1_0001178; organism=Gossypium raimondii; type=contig; length=2238bp
CTCCCTCTCTGTTTACTTGGTTGTGGAGAAACCTTTTTATTTCCAAAGGC
ATCGGTTTACGTCGCTATTTGAAAGCTTGATGAGTAGGGTTGTGCTAGGC
TTGCCAGGGCCATGGGCTGAGGATAACCGTGAGCCGTCTGATCATTACAC
TACCAAAATTGGTGGACTTCCTGATTGGCCTCTTCCTATAGAGGCTTTGA
AGTTCAACCCTACACTTATTCACTGCACACAATGTGGAAGTAAACTCTGT
CTTGTTGCTCAGGTTTATGCTCCAGTTTCAAGTGGAACTTTGAACATAGA
AGACCGTCTACTTCTTGTTTTTGCTTGTGTGACACCAAATTGTGGTAGCT
CTCCTCTCAGGTTGTTTCTCTGATTTGTTTGTTTGACCCTTGTTTATCAT
TTAAACATGATTCTTTTAACTGCATAGGTGTTATGTTCTCTTTTAGTCAG
TGTTGTCAAGGCGTGTTCTTAGGTGCGCCGGCGCGCCTTGGCACTGGACA
GCAAAATCGCCTAAGGCCCTTTCAGGAGAAGTCCATTTAATCAGGTGCAC
ACCTACTGCACGTAGGCACCTACTTTTGTAAGGAAGCCTGCCTAATTGAA
GTTATCCTTAATTTCTTTTAATTTTCACTTTTTTTCGTTAGATATGCCTT
AGTAAAAAGAGGATAGTACCAGACTCTAATACATCTTAATATTTGAGTAT
TCAACAATAGACATTGACCATAGGGAAATCAAGTATATTGACCAATAAAA
AAATGCATGTTTTGTAGATAAACTAGACCAGACTTCAGAGTTTATTATAA
ATCTCAAGCTTTATATTACATATAAAAATTCACACATTTACATATTGCTC
ATTACTTTTCTCAGGCTAGTGCTTTTTTTTGCCTTGTGCGTTGCGCCTAA
GGCAAAGTTGGCGAGCTCTTCGGATTCAGAAAGTGGAAAATGAATCAAAG
GTATCATCCTCTGCTGCTACTCTGGATAAAGCTCCTTCAGCTTCATCTCC
TGTTTCTGTTTCAAAAACTAACTGGTGGGAGAATTTGAGTGATGAGGATA
ATGAAGATTTGGATTTGGAGGACTTGAGTAAAGCATTTTCTGAAGTGACA
AGCTTGAGTTCTGAGCCCAAGAAGATAAGTAGCAACCGGAACTCTGAGGG
TGCTGTGAAGCATTCTTTGTCTTTAATTGCACAAACAAGAGGGGTAGATA
CTGATACACCAGTGATGCCATGCTTCTACATTTATAGTCAGGCGGAACCA
TCATCAAAGGATTTTTCTTCTATGTGTTCAAATCACTCGTCACTTTCAGT
CAAGGAGAAAGAAGGTGATATTGATGATCATGGACAAGAAGAAACATGGG
AAGCTGAAAATTATGAATATGATAAGGCTCTGAATGCTGACAGGACTTAT
CTCAAGTTCAAAAAACAATTGGATGCATCTCCAGAGCAATGTTTTAGATA
TGCATTCGGTGGGAAACCTCTTCTGGCTACAGCAGAGGTGGATAATGCTG
GGAAATGCGGGCTTTGTGGTGCATCAAGGCACTTTGAACTGCAGCTTATG
CCCCCATTAATATATTTTCTGCAAGAAGAAGTCGATGATTGTCATAAAGG
TTCTCTGGAGAACTGGAACTGGCTGACTCTTGTTGTCTATACCTGTTCCA
AGAGCTGTTCTAATTCATTTGATGAAGAGAAGTCCATCCATGGCCATGGT
CAATGGTTTGTCGTAGAGGAGACTGTTCTCGTGCAATTCGATAAGCCCTT
AAATGAGTGTCTTCAACGCTATTTCTCATGATTTACAATTTTTGTCAAAC
ATTTGTGTGAATCGGAACTCTTTCAGTCTTTAATCTATGTTGAGCAGCTT
CCATGCATACAGAGATGAACTTACAAGGATCCTGAAAGTTTACTGATTTA
TTTTATGCCCTCGACAAAGCTAGAGCGTGTCATTATTATCTCTGACAAAG
TGTTATGCGTTGGTTGAAGATCGATGAGAGGTATCAAATTTTGTATCATG
ATCTTTGGTTTGCTTTAGTTTATAACTTAAATTCTTCTGTTATCCTATGT
AGATGGTTTTCATGGCATTAAATTGCACAAGGATCTTTCTACATGGCTTA
CTGGACTACTTTCTTTAATCATCATCTATCTATAAACGAAGTCTTTGATT
GAATTTGATGTCACCAACTCAAGAAAGTATTTATGATTTTGTTTATAAAT
AATAGAATTTCAACTTTCAAGCCGCTGTGATGCATCTA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR007320PDCD2_C
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm