g.raimondii_cottongen_reftransV1_0000682, g.raimondii_cottongen_reftransV1_0000682 (contig) Gossypium raimondii
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2URG6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G212200 PE=4 SV=1) HSP 1 Score: 269.626 bits (688), Expect = 8.002e-83 Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = -2 Query: 1113 IQQSSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNKQFK 1514 + SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNKQFK Sbjct: 20 LTSSSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNKQFK 153
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2S5I8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G212200 PE=4 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 6.210e-78 Identity = 124/127 (97.64%), Postives = 125/127 (98.43%), Query Frame = -2 Query: 1134 IQQSSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 1514 + SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR Sbjct: 20 LTSSSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 146
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2QKC5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G212200 PE=4 SV=1) HSP 1 Score: 256.144 bits (653), Expect = 1.014e-77 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = -2 Query: 1134 SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 1505 SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR Sbjct: 2 SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 125
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2URF9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G212200 PE=4 SV=1) HSP 1 Score: 255.758 bits (652), Expect = 1.091e-77 Identity = 124/127 (97.64%), Postives = 125/127 (98.43%), Query Frame = -2 Query: 1134 IQQSSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 1514 + SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR Sbjct: 20 LTSSSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 146
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2TTA2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G212200 PE=4 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 1.866e-77 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = -2 Query: 1134 SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 1505 SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR Sbjct: 2 SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 125
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2TNR2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G212200 PE=4 SV=1) HSP 1 Score: 256.144 bits (653), Expect = 2.422e-77 Identity = 124/127 (97.64%), Postives = 125/127 (98.43%), Query Frame = -2 Query: 1134 IQQSSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 1514 + SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR Sbjct: 20 LTSSSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 146 HSP 2 Score: 70.8626 bits (172), Expect = 1.686e-10 Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -2 Query: 768 ELWLEFLFAEVSDQNFVDEEKGEKASNENVAPRS 869 ELWLEFLFAEVSDQNFVDEEKGEKASNENVAPRS Sbjct: 147 ELWLEFLFAEVSDQNFVDEEKGEKASNENVAPRS 180
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0B0NRV6_GOSAR (Polycystic kidney disease protein 1-like 2 OS=Gossypium arboreum GN=F383_03761 PE=4 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 4.299e-59 Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = -2 Query: 1134 MEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 1436 MEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSP IQQFRSGSKSCVLASSSLQGNASTR Sbjct: 1 MEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPCIQQFRSGSKSCVLASSSLQGNASTR 101
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A061FIY3_THECC (Cold regulated gene 27, putative isoform 2 OS=Theobroma cacao GN=TCM_033832 PE=4 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 1.278e-53 Identity = 96/128 (75.00%), Postives = 107/128 (83.59%), Query Frame = -2 Query: 1128 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHC---TSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGK 1502 S+V ESTSTEWTDEKHSLYL SMEASF+NQLYDS+N +GWNSQKEKL KSSRQ HC TSSGQFKVLRGG WKKINFERPGFQ NKT+GS FV SPW+Q FRSGS S V AS S+QG+AS++ + Sbjct: 39 SLVTESTSTEWTDEKHSLYLKSMEASFVNQLYDSMNFLGWNSQKEKLSGSKSSRQRHCNICTSSGQFKVLRGGSWKKINFERPGFQLNKTDGSHCFVASPWVQHFRSGSMSRVPASRSVQGSASSKER 166
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A061FAS9_THECC (Cold regulated gene 27, putative isoform 3 OS=Theobroma cacao GN=TCM_033832 PE=4 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 2.150e-53 Identity = 96/128 (75.00%), Postives = 107/128 (83.59%), Query Frame = -2 Query: 1128 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHC---TSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGK 1502 S+V ESTSTEWTDEKHSLYL SMEASF+NQLYDS+N +GWNSQKEKL KSSRQ HC TSSGQFKVLRGG WKKINFERPGFQ NKT+GS FV SPW+Q FRSGS S V AS S+QG+AS++ + Sbjct: 39 SLVTESTSTEWTDEKHSLYLKSMEASFVNQLYDSMNFLGWNSQKEKLSGSKSSRQRHCNICTSSGQFKVLRGGSWKKINFERPGFQLNKTDGSHCFVASPWVQHFRSGSMSRVPASRSVQGSASSKAE 166
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A061FC20_THECC (Cold regulated gene 27, putative isoform 1 OS=Theobroma cacao GN=TCM_033832 PE=4 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.631e-53 Identity = 97/131 (74.05%), Postives = 108/131 (82.44%), Query Frame = -2 Query: 1119 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHC---TSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNKQ 1502 S+V ESTSTEWTDEKHSLYL SMEASF+NQLYDS+N +GWNSQKEKL KSSRQ HC TSSGQFKVLRGG WKKINFERPGFQ NKT+GS FV SPW+Q FRSGS S V AS S+QG+AS++ + Q Sbjct: 39 SLVTESTSTEWTDEKHSLYLKSMEASFVNQLYDSMNFLGWNSQKEKLSGSKSSRQRHCNICTSSGQFKVLRGGSWKKINFERPGFQLNKTDGSHCFVASPWVQHFRSGSMSRVPASRSVQGSASSKEVSDQ 169 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0000682 ID=g.raimondii_cottongen_reftransV1_0000682; Name=g.raimondii_cottongen_reftransV1_0000682; organism=Gossypium raimondii; type=contig; length=1962bpback to top |