g.raimondii_cottongen_reftransV1_0000682, g.raimondii_cottongen_reftransV1_0000682 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0000682
Unique Nameg.raimondii_cottongen_reftransV1_0000682
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length1962
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr09chromosomeg.raimondii_cottongen_reftransV1_0000682:1..1962 .
Chr09:16458210..16460267 +
Homology
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BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: E0CPV3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10480 PE=4 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.141e-31
Identity = 69/128 (53.91%), Postives = 84/128 (65.62%), Query Frame = -2 
Query: 1128 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHC---TSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGK 1502
            S V E  S EWTDEKHSLYL SMEASF++QLY+S+ L+GW+SQKE     K S Q+ C    SSGQFKVLRGG W+KINFER   Q  K +GS   + +PWIQ FRS  +   +   + Q N S+  K
Sbjct:   31 SPVTEPMSMEWTDEKHSLYLKSMEASFVDQLYNSLGLLGWHSQKENPSDSKPSLQMLCKTRNSSGQFKVLRGGFWQKINFERARKQMVKADGSHVLLANPWIQHFRSACRDETVVLPAPQENGSSTRK 158
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A059BJZ5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00223 PE=4 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.681e-31
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = -2 
Query: 1128 AESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQI--HCTS-SGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGK 1493
            A+S++TEWTDEKHSLYL SMEA+F++QLYDS+ L+GW+ +K     P+ +RQI  H  S SGQFKVLR G WKKI FERP  Q  K +GSR  V SPWIQ FR  S+   L S  +   +S +GK
Sbjct:   33 ADSSNTEWTDEKHSLYLKSMEATFVDQLYDSMELLGWHLEKANFLDPQ-TRQISKHPYSPSGQFKVLRDGSWKKIGFERPHLQVEKADGSRDLVKSPWIQHFRPASRLPRLGSPKI--GSSGKGK 154
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A059BJN0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00223 PE=4 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.513e-31
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = -2 
Query: 1128 AESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQI--HCTS-SGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGK 1493
            A+S++TEWTDEKHSLYL SMEA+F++QLYDS+ L+GW+ +K     P+ +RQI  H  S SGQFKVLR G WKKI FERP  Q  K +GSR  V SPWIQ FR  S+   L S  +   +S +GK
Sbjct:   33 ADSSNTEWTDEKHSLYLKSMEATFVDQLYDSMELLGWHLEKANFLDPQ-TRQISKHPYSPSGQFKVLRDGSWKKIGFERPHLQVEKADGSRDLVKSPWIQHFRPASRLPRLGSPKI--GSSGKGK 154
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: K4BUX2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g078880.2 PE=4 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.789e-30
Identity = 61/120 (50.83%), Postives = 83/120 (69.17%), Query Frame = -2 
Query: 1122 STEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNK 1481
            S EWTDEKHSLYL SMEASF++ LY S+++VG +SQ +   R KSSRQ H   SGQ+KV + GCW KI+F++   Q NKT+GS + + SPWI+ F+S  +     +S LQGN +   +N+
Sbjct:   33 SMEWTDEKHSLYLKSMEASFVDHLYGSLDVVGRHSQNDGFSRHKSSRQKHVNPSGQYKVFQDGCWTKIDFKKDQPQLNKTSGSAAVLASPWIKHFKSAGRHQTRVNSDLQGNTTLVKQNQ 152
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: M1ADR3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402007970 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.619e-29
Identity = 60/120 (50.00%), Postives = 85/120 (70.83%), Query Frame = -2 
Query: 1122 STEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNK 1481
            S EWTD+KHSLYL SMEASF++ LY S+++VG +SQ + L R KSSRQ H   SGQ+KV + GCW KI+F++   Q NKTN S + + SPWI+ ++S  +  +  +S LQGN ++  +N+
Sbjct:   33 SMEWTDKKHSLYLKSMEASFVDHLYGSLDVVGRHSQNDGLSRHKSSRQRHANPSGQYKVFQDGCWTKIDFKKDEPQLNKTNESAAVLASPWIKHYKSTGRHQMRVNSDLQGNTNSVKQNQ 152
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
E0CPV3_VITVI4.141e-3153.91Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A059BJZ5_EUCGR4.681e-3156.00Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A059BJN0_EUCGR5.513e-3156.00Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
K4BUX2_SOLLC1.789e-3050.83Uncharacterized protein OS=Solanum lycopersicum GN... [more]
M1ADR3_SOLTU1.619e-2950.00Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]

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BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0000682 ID=g.raimondii_cottongen_reftransV1_0000682; Name=g.raimondii_cottongen_reftransV1_0000682; organism=Gossypium raimondii; type=contig; length=1962bp
GGAAAAACAAATAAGACCATAATTTAACTATTAAAATAATATCATTTACA
ATTTAAAAGAACCATATATGAAAACTGCAAAATAGGACACAGCAAACTAT
CTGCAACGCATTGCTCTACTAAAAATTAGTACACTATGAAGATGATAACA
AAGTATCCATTCTGAGTTCAAAAACTGCTATGGCAATAGTATGCACATAT
AGAAGGACAGGGTAGACCAAAATATTCTCGGATCATACCATCACTGCCTG
TGCAAGTGTATAAATTTATATATCGCCAATGCTTCAAATTTGAACCCTAT
AACTCCTCTTTCTGGCACTAAATACTAATGTCGGCCGCACTTGTTTATAT
TTGCAAGGAAAAAAACTGCCCTCTATGAACTACTCCTATCTGTCTCTTTG
TTAGTGTCATTCCTTTATACGTACGCAAATGCAAGTAACACAAGCATTGA
GTATGAAGTCACAAAAGTTTTTAATATTTATAGAGTATCCTTGGGTTTGC
TCACTATATCAGGATGTAACTAAACAAAACAGCTGCTATTTTCCAAATGA
ATATTCACTGGTGGAAGCTCTTTATCTAGCTGCCGTGCCAATACATGTTA
AGCTAGGTACTTCTGCTAAAGCAGGCTTCACCTTAAGGATGAAACTAAAA
AACAGAAAAATGAAAAAGTATTCAGAAACTTAGGACTAAAGAGGTGATCA
TTAATCAATGGCAATGCTAACAATTTGATCTCATCATTACATGAAGCAAC
AGTTACCAAAGATTTCAGCTTCTTGGAGCTACATTCTCATTGCTAGCCTT
TTCACCTTTTTCCTCATCTACGAAGTTCTGATCAGACACCTCTGCAAACA
AAAACTCCAGCCAAAGTTCTGATAATCTTGAATAAAATGTTCATTTTGAT
ACATATATATAGAAATGGTGATTATAATAGAGATGAAAAATATTAGTGAA
AGCACTTCAATTGAAACGTTGACATATGGACCATTCAATTTTAAATCATC
ATGCACACACCGATATACCAGTGCGGACATCTGTTGTAGTACTGCCAAGT
GGAATAAAGTTATCTTCACAATCTCGGCCAACTATGGGTAATGAGATGCA
TGAAAGTGTTCATTTAAATTGTTTGTTTTTACCTCTGGTTGAAGCATTGC
CTTGAAGACTAGAGGAGGCTAAGACACATGACTTAGATCCAGATCTGAAC
TGCTGGATCCAAGGGCTTCCCACAAAAGAACGAGAGCCATTAGTTTTATT
AGGTTGAAATCCAGGTCTTTCGAAATTGATCTTCTTCCAGCAACCACCTC
GAAGAACTTTAAACTGGCCAGAAGAGGTACAGTGTATTTGCCTTGATGAT
TTTGGTCTTTCCAATTTCTCCTTTTGTGAGTTCCAGCCAACAAGATTCAC
AGAATCATATAACTGGTTAATAAATGACGCTTCCATGGAATTAAGGTATA
AACTGTGCTTTTCATCCGTCCATTCAGTAGAGGTAGACTCTGCCACCACA
GAACTCTGTTGTATTATCATCAACACACATCATCAGCAAGTTATTGCAAA
AGGGAAGAAATTAAAACAGTACGTAATTCTTGCCGGCAACCAGATTAGAA
AACAACAATCCAAAATTAAAGTAAATAAATACCAAATGCTCAAAAGAAGA
GCGGTTGTAAATGAAAAATTAAAAGAAGATGCATGCTTGAAAATAAACAA
ATAAAAAATTAGCCTATAAAAGTGTTTTGTTAGTATATTAGGTGGTTTTA
AAGTGAAGCAAGGAAATTGAGCTGCAAAACCATATGAAAATTACACTAGT
CAACTGAGAGGGAGACGCCTCTAGACTCCTCCGAGGCTCAATTCTGTTGA
TACCCTCCATGCAAAAAAACACCTTAAGAAAAGATCCCCAGAGCGATGAA
GACAAATATATTTGAAGGGAGGGGTAGAGATGATGGCAGGTGAGATGTAC
TGAAAAGGTGAT
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