g.raimondii_cottongen_reftransV1_0000682, g.raimondii_cottongen_reftransV1_0000682 (contig) Gossypium raimondii
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A061FBN8_THECC (Cold regulated gene 27, putative isoform 4 OS=Theobroma cacao GN=TCM_033832 PE=4 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 1.592e-51 Identity = 99/160 (61.88%), Postives = 111/160 (69.38%), Query Frame = -2 Query: 1050 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIH---CTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNKQFK*TLSCISL------PIVGRDCEDNFIP 1502 S+V ESTSTEWTDEKHSLYL SMEASF+NQLYDS+N +GWNSQKEKL KSSRQ H CTSSGQFKVLRGG WKKINFERPGFQ NKT+GS FV SPW+Q FRSGS S V AS S+Q S + + +C +V C D +P Sbjct: 39 SLVTESTSTEWTDEKHSLYLKSMEASFVNQLYDSMNFLGWNSQKEKLSGSKSSRQRHCNICTSSGQFKVLRGGSWKKINFERPGFQLNKTDGSHCFVASPWVQHFRSGSMSRVPASRSVQAEVSDQNFEDEELGEKACSDCSSKKLKTLVNDSCNDQVVP 198
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A061FCJ8_THECC (Cold regulated gene 27, putative isoform 5 OS=Theobroma cacao GN=TCM_033832 PE=4 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 4.886e-51 Identity = 100/159 (62.89%), Postives = 114/159 (71.70%), Query Frame = -2 Query: 1050 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIH---CTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNKQF--K*TLSCIS---LPIVGRDCEDNFIP 1502 S+V ESTSTEWTDEKHSLYL SMEASF+NQLYDS+N +GWNSQKEKL KSSRQ H CTSSGQFKVLRGG WKKINFERPGFQ NKT+GS FV SPW+Q FRSGS S V AS S+Q + ++++ K C S +V C D +P Sbjct: 39 SLVTESTSTEWTDEKHSLYLKSMEASFVNQLYDSMNFLGWNSQKEKLSGSKSSRQRHCNICTSSGQFKVLRGGSWKKINFERPGFQLNKTDGSHCFVASPWVQHFRSGSMSRVPASRSVQEVSDQNFEDEELGEKACSDCSSKKLKTLVNDSCNDQVVP 197
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2SL49_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G020000 PE=4 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 4.207e-49 Identity = 95/130 (73.08%), Postives = 104/130 (80.00%), Query Frame = -2 Query: 1113 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNKQFK 1502 S++ ESTSTEWTDEKHSLYL SMEASF+NQLYDS++ +G NS KEK KSSR+ C SSGQFKVLRGG WKKINFERP Q NK S SFV SPWIQ FRSGSKS VLAS SLQ NAS++GKNKQ K Sbjct: 39 SMMTESTSTEWTDEKHSLYLKSMEASFVNQLYDSMSFLGCNS-KEKSPGSKSSRKARCISSGQFKVLRGGSWKKINFERPVVQLNKRYCSHSFVASPWIQHFRSGSKSRVLASCSLQDNASSKGKNKQCK 167
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0B0NX40_GOSAR (Isoleucine--tRNA ligase OS=Gossypium arboreum GN=F383_03622 PE=4 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 4.095e-46 Identity = 91/129 (70.54%), Postives = 101/129 (78.29%), Query Frame = -2 Query: 1134 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNG------SRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 1502 S++ ESTSTEWTDEKHSLYL SMEASF+NQLYDS++ +G NS KEK KSSR+ HC SSGQFKVLRGG WKKINFERPG Q NK + S SFV SPWIQ FRSGSKS VLAS SLQ NAS++ Sbjct: 39 SMMTESTSTEWTDEKHSLYLKSMEASFVNQLYDSMSFLGCNS-KEKSPGSKSSRKTHCISSGQFKVLRGGSWKKINFERPGVQLNKRDQLNKRDCSHSFVASPWIQHFRSGSKSRVLASCSLQDNASSK 166
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2R0L4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G020000 PE=4 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 2.117e-44 Identity = 90/128 (70.31%), Postives = 100/128 (78.12%), Query Frame = -2 Query: 1119 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNKQ 1502 S++ ESTSTEWTDEKHSLYL SMEASF+NQLYDS++ +G NS KEK KSSR+ C SSGQFKVLRGG WKKINFERP Q NK S SFV SPWIQ FRSGSKS VLAS SLQ NAS++ + Q Sbjct: 102 SMMTESTSTEWTDEKHSLYLKSMEASFVNQLYDSMSFLGCNS-KEKSPGSKSSRKARCISSGQFKVLRGGSWKKINFERPVVQLNKRYCSHSFVASPWIQHFRSGSKSRVLASCSLQDNASSKEVSDQ 228
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0B0PSL8_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_05888 PE=4 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 4.172e-39 Identity = 82/130 (63.08%), Postives = 96/130 (73.85%), Query Frame = -2 Query: 1119 SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLAS-SSLQGNASTRGKNKQ 1505 +S++ ESTSTEWTDEKHSLYL SMEASF+NQLYDS N +GW+S K SRQ H TSS Q+KVLRG WKKINFE PGF+ NK + S F+ SPW+Q RSGSKS VLAS S LQ NAS++ + Q Sbjct: 33 ASLMTESTSTEWTDEKHSLYLKSMEASFVNQLYDSWNFLGWSS--------KLSRQTHGTSSDQYKVLRGDRWKKINFEGPGFRLNKRDRSSCFMASPWVQHLRSGSKSRVLASCSHLQDNASSKEVSDQ 154
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0B0PNI0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_05888 PE=4 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 2.389e-38 Identity = 82/130 (63.08%), Postives = 96/130 (73.85%), Query Frame = -2 Query: 1119 SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLAS-SSLQGNASTRGKNKQ 1505 +S++ ESTSTEWTDEKHSLYL SMEASF+NQLYDS N +GW+S K SRQ H TSS Q+KVLRG WKKINFE PGF+ NK + S F+ SPW+Q RSGSKS VLAS S LQ NAS++ + Q Sbjct: 33 ASLMTESTSTEWTDEKHSLYLKSMEASFVNQLYDSWNFLGWSS--------KLSRQTHGTSSDQYKVLRGDRWKKINFEGPGFRLNKRDRSSCFMASPWVQHLRSGSKSRVLASCSHLQDNASSKEVSDQ 154
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2QBK2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G132500 PE=4 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 7.371e-38 Identity = 80/127 (62.99%), Postives = 92/127 (72.44%), Query Frame = -2 Query: 1119 VAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLAS-SSLQGNASTRGKNKQ 1496 + ESTSTEWTDEKHSLYL SMEASF+NQLYDS N +G +S K SRQ H TSS Q+KVLRGG WKKINFERPGF+ NK + F+ SPWIQ RSGSKS VLAS S LQ N +++ + Q Sbjct: 1 MTESTSTEWTDEKHSLYLKSMEASFVNQLYDSWNFLGRSS--------KLSRQTHGTSSDQYKVLRGGRWKKINFERPGFRLNKRDRPSCFMASPWIQHLRSGSKSRVLASCSHLQDNVTSKEVSDQ 119
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2M9R2_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_002G132500 PE=4 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 1.329e-37 Identity = 81/129 (62.79%), Postives = 94/129 (72.87%), Query Frame = -2 Query: 1119 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLAS-SSLQGNASTRGKNKQ 1502 S++ ESTSTEWTDEKHSLYL SMEASF+NQLYDS N +G +S K SRQ H TSS Q+KVLRGG WKKINFERPGF+ NK + F+ SPWIQ RSGSKS VLAS S LQ N +++ + Q Sbjct: 53 SLMTESTSTEWTDEKHSLYLKSMEASFVNQLYDSWNFLGRSS--------KLSRQTHGTSSDQYKVLRGGRWKKINFERPGFRLNKRDRPSCFMASPWIQHLRSGSKSRVLASCSHLQDNVTSKEVSDQ 173
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A059BKM7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00223 PE=4 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 3.638e-31 Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = -2 Query: 1128 AESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQI--HCTS-SGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGK 1493 A+S++TEWTDEKHSLYL SMEA+F++QLYDS+ L+GW+ +K P+ +RQI H S SGQFKVLR G WKKI FERP Q K +GSR V SPWIQ FR S+ L S + +S +GK Sbjct: 33 ADSSNTEWTDEKHSLYLKSMEATFVDQLYDSMELLGWHLEKANFLDPQ-TRQISKHPYSPSGQFKVLRDGSWKKIGFERPHLQVEKADGSRDLVKSPWIQHFRPASRLPRLGSPKI--GSSGKGK 154 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0000682 ID=g.raimondii_cottongen_reftransV1_0000682; Name=g.raimondii_cottongen_reftransV1_0000682; organism=Gossypium raimondii; type=contig; length=1962bpback to top |