g.raimondii_cottongen_reftransV1_0000682, g.raimondii_cottongen_reftransV1_0000682 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0000682
Unique Nameg.raimondii_cottongen_reftransV1_0000682
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length1962
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr09chromosomeg.raimondii_cottongen_reftransV1_0000682:1..1962 .
Chr09:16458210..16460267 +
Homology
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A061FBN8_THECC (Cold regulated gene 27, putative isoform 4 OS=Theobroma cacao GN=TCM_033832 PE=4 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.592e-51
Identity = 99/160 (61.88%), Postives = 111/160 (69.38%), Query Frame = -2
Query: 1050 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIH---CTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNKQFK*TLSCISL------PIVGRDCEDNFIP 1502
            S+V ESTSTEWTDEKHSLYL SMEASF+NQLYDS+N +GWNSQKEKL   KSSRQ H   CTSSGQFKVLRGG WKKINFERPGFQ NKT+GS  FV SPW+Q FRSGS S V AS S+Q   S +    +     +C          +V   C D  +P
Sbjct:   39 SLVTESTSTEWTDEKHSLYLKSMEASFVNQLYDSMNFLGWNSQKEKLSGSKSSRQRHCNICTSSGQFKVLRGGSWKKINFERPGFQLNKTDGSHCFVASPWVQHFRSGSMSRVPASRSVQAEVSDQNFEDEELGEKACSDCSSKKLKTLVNDSCNDQVVP 198          
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A061FCJ8_THECC (Cold regulated gene 27, putative isoform 5 OS=Theobroma cacao GN=TCM_033832 PE=4 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 4.886e-51
Identity = 100/159 (62.89%), Postives = 114/159 (71.70%), Query Frame = -2
Query: 1050 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIH---CTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNKQF--K*TLSCIS---LPIVGRDCEDNFIP 1502
            S+V ESTSTEWTDEKHSLYL SMEASF+NQLYDS+N +GWNSQKEKL   KSSRQ H   CTSSGQFKVLRGG WKKINFERPGFQ NKT+GS  FV SPW+Q FRSGS S V AS S+Q  +    ++++   K    C S     +V   C D  +P
Sbjct:   39 SLVTESTSTEWTDEKHSLYLKSMEASFVNQLYDSMNFLGWNSQKEKLSGSKSSRQRHCNICTSSGQFKVLRGGSWKKINFERPGFQLNKTDGSHCFVASPWVQHFRSGSMSRVPASRSVQEVSDQNFEDEELGEKACSDCSSKKLKTLVNDSCNDQVVP 197          
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2SL49_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G020000 PE=4 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.207e-49
Identity = 95/130 (73.08%), Postives = 104/130 (80.00%), Query Frame = -2
Query: 1113 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNKQFK 1502
            S++ ESTSTEWTDEKHSLYL SMEASF+NQLYDS++ +G NS KEK    KSSR+  C SSGQFKVLRGG WKKINFERP  Q NK   S SFV SPWIQ FRSGSKS VLAS SLQ NAS++GKNKQ K
Sbjct:   39 SMMTESTSTEWTDEKHSLYLKSMEASFVNQLYDSMSFLGCNS-KEKSPGSKSSRKARCISSGQFKVLRGGSWKKINFERPVVQLNKRYCSHSFVASPWIQHFRSGSKSRVLASCSLQDNASSKGKNKQCK 167          
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0B0NX40_GOSAR (Isoleucine--tRNA ligase OS=Gossypium arboreum GN=F383_03622 PE=4 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.095e-46
Identity = 91/129 (70.54%), Postives = 101/129 (78.29%), Query Frame = -2
Query: 1134 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNG------SRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTR 1502
            S++ ESTSTEWTDEKHSLYL SMEASF+NQLYDS++ +G NS KEK    KSSR+ HC SSGQFKVLRGG WKKINFERPG Q NK +       S SFV SPWIQ FRSGSKS VLAS SLQ NAS++
Sbjct:   39 SMMTESTSTEWTDEKHSLYLKSMEASFVNQLYDSMSFLGCNS-KEKSPGSKSSRKTHCISSGQFKVLRGGSWKKINFERPGVQLNKRDQLNKRDCSHSFVASPWIQHFRSGSKSRVLASCSLQDNASSK 166          
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2R0L4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G020000 PE=4 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 2.117e-44
Identity = 90/128 (70.31%), Postives = 100/128 (78.12%), Query Frame = -2
Query: 1119 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGKNKQ 1502
            S++ ESTSTEWTDEKHSLYL SMEASF+NQLYDS++ +G NS KEK    KSSR+  C SSGQFKVLRGG WKKINFERP  Q NK   S SFV SPWIQ FRSGSKS VLAS SLQ NAS++  + Q
Sbjct:  102 SMMTESTSTEWTDEKHSLYLKSMEASFVNQLYDSMSFLGCNS-KEKSPGSKSSRKARCISSGQFKVLRGGSWKKINFERPVVQLNKRYCSHSFVASPWIQHFRSGSKSRVLASCSLQDNASSKEVSDQ 228          
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0B0PSL8_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_05888 PE=4 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 4.172e-39
Identity = 82/130 (63.08%), Postives = 96/130 (73.85%), Query Frame = -2
Query: 1119 SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLAS-SSLQGNASTRGKNKQ 1505
            +S++ ESTSTEWTDEKHSLYL SMEASF+NQLYDS N +GW+S        K SRQ H TSS Q+KVLRG  WKKINFE PGF+ NK + S  F+ SPW+Q  RSGSKS VLAS S LQ NAS++  + Q
Sbjct:   33 ASLMTESTSTEWTDEKHSLYLKSMEASFVNQLYDSWNFLGWSS--------KLSRQTHGTSSDQYKVLRGDRWKKINFEGPGFRLNKRDRSSCFMASPWVQHLRSGSKSRVLASCSHLQDNASSKEVSDQ 154          
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0B0PNI0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_05888 PE=4 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.389e-38
Identity = 82/130 (63.08%), Postives = 96/130 (73.85%), Query Frame = -2
Query: 1119 SSVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLAS-SSLQGNASTRGKNKQ 1505
            +S++ ESTSTEWTDEKHSLYL SMEASF+NQLYDS N +GW+S        K SRQ H TSS Q+KVLRG  WKKINFE PGF+ NK + S  F+ SPW+Q  RSGSKS VLAS S LQ NAS++  + Q
Sbjct:   33 ASLMTESTSTEWTDEKHSLYLKSMEASFVNQLYDSWNFLGWSS--------KLSRQTHGTSSDQYKVLRGDRWKKINFEGPGFRLNKRDRSSCFMASPWVQHLRSGSKSRVLASCSHLQDNASSKEVSDQ 154          
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2QBK2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G132500 PE=4 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.371e-38
Identity = 80/127 (62.99%), Postives = 92/127 (72.44%), Query Frame = -2
Query: 1119 VAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLAS-SSLQGNASTRGKNKQ 1496
            + ESTSTEWTDEKHSLYL SMEASF+NQLYDS N +G +S        K SRQ H TSS Q+KVLRGG WKKINFERPGF+ NK +    F+ SPWIQ  RSGSKS VLAS S LQ N +++  + Q
Sbjct:    1 MTESTSTEWTDEKHSLYLKSMEASFVNQLYDSWNFLGRSS--------KLSRQTHGTSSDQYKVLRGGRWKKINFERPGFRLNKRDRPSCFMASPWIQHLRSGSKSRVLASCSHLQDNVTSKEVSDQ 119          
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A0D2M9R2_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_002G132500 PE=4 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.329e-37
Identity = 81/129 (62.79%), Postives = 94/129 (72.87%), Query Frame = -2
Query: 1119 SVVAESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQIHCTSSGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLAS-SSLQGNASTRGKNKQ 1502
            S++ ESTSTEWTDEKHSLYL SMEASF+NQLYDS N +G +S        K SRQ H TSS Q+KVLRGG WKKINFERPGF+ NK +    F+ SPWIQ  RSGSKS VLAS S LQ N +++  + Q
Sbjct:   53 SLMTESTSTEWTDEKHSLYLKSMEASFVNQLYDSWNFLGRSS--------KLSRQTHGTSSDQYKVLRGGRWKKINFERPGFRLNKRDRPSCFMASPWIQHLRSGSKSRVLASCSHLQDNVTSKEVSDQ 173          
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Match: A0A059BKM7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F00223 PE=4 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.638e-31
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = -2
Query: 1128 AESTSTEWTDEKHSLYLNSMEASFINQLYDSVNLVGWNSQKEKLERPKSSRQI--HCTS-SGQFKVLRGGCWKKINFERPGFQPNKTNGSRSFVGSPWIQQFRSGSKSCVLASSSLQGNASTRGK 1493
            A+S++TEWTDEKHSLYL SMEA+F++QLYDS+ L+GW+ +K     P+ +RQI  H  S SGQFKVLR G WKKI FERP  Q  K +GSR  V SPWIQ FR  S+   L S  +   +S +GK
Sbjct:   33 ADSSNTEWTDEKHSLYLKSMEATFVDQLYDSMELLGWHLEKANFLDPQ-TRQISKHPYSPSGQFKVLRDGSWKKIGFERPHLQVEKADGSRDLVKSPWIQHFRPASRLPRLGSPKI--GSSGKGK 154          
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A061FBN8_THECC1.592e-5161.88Cold regulated gene 27, putative isoform 4 OS=Theo... [more]
A0A061FCJ8_THECC4.886e-5162.89Cold regulated gene 27, putative isoform 5 OS=Theo... [more]
A0A0D2SL49_GOSRA4.207e-4973.08Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0NX40_GOSAR4.095e-4670.54Isoleucine--tRNA ligase OS=Gossypium arboreum GN=F... [more]
A0A0D2R0L4_GOSRA2.117e-4470.31Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0PSL8_GOSAR4.172e-3963.08Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0B0PNI0_GOSAR2.389e-3863.08Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2QBK2_GOSRA7.371e-3862.99Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2M9R2_GOSRA1.329e-3762.79Uncharacterized protein (Fragment) OS=Gossypium ra... [more]
A0A059BKM7_EUCGR3.638e-3156.00Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]

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BLAST of g.raimondii_cottongen_reftransV1_0000682 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0000682 ID=g.raimondii_cottongen_reftransV1_0000682; Name=g.raimondii_cottongen_reftransV1_0000682; organism=Gossypium raimondii; type=contig; length=1962bp
GGAAAAACAAATAAGACCATAATTTAACTATTAAAATAATATCATTTACA
ATTTAAAAGAACCATATATGAAAACTGCAAAATAGGACACAGCAAACTAT
CTGCAACGCATTGCTCTACTAAAAATTAGTACACTATGAAGATGATAACA
AAGTATCCATTCTGAGTTCAAAAACTGCTATGGCAATAGTATGCACATAT
AGAAGGACAGGGTAGACCAAAATATTCTCGGATCATACCATCACTGCCTG
TGCAAGTGTATAAATTTATATATCGCCAATGCTTCAAATTTGAACCCTAT
AACTCCTCTTTCTGGCACTAAATACTAATGTCGGCCGCACTTGTTTATAT
TTGCAAGGAAAAAAACTGCCCTCTATGAACTACTCCTATCTGTCTCTTTG
TTAGTGTCATTCCTTTATACGTACGCAAATGCAAGTAACACAAGCATTGA
GTATGAAGTCACAAAAGTTTTTAATATTTATAGAGTATCCTTGGGTTTGC
TCACTATATCAGGATGTAACTAAACAAAACAGCTGCTATTTTCCAAATGA
ATATTCACTGGTGGAAGCTCTTTATCTAGCTGCCGTGCCAATACATGTTA
AGCTAGGTACTTCTGCTAAAGCAGGCTTCACCTTAAGGATGAAACTAAAA
AACAGAAAAATGAAAAAGTATTCAGAAACTTAGGACTAAAGAGGTGATCA
TTAATCAATGGCAATGCTAACAATTTGATCTCATCATTACATGAAGCAAC
AGTTACCAAAGATTTCAGCTTCTTGGAGCTACATTCTCATTGCTAGCCTT
TTCACCTTTTTCCTCATCTACGAAGTTCTGATCAGACACCTCTGCAAACA
AAAACTCCAGCCAAAGTTCTGATAATCTTGAATAAAATGTTCATTTTGAT
ACATATATATAGAAATGGTGATTATAATAGAGATGAAAAATATTAGTGAA
AGCACTTCAATTGAAACGTTGACATATGGACCATTCAATTTTAAATCATC
ATGCACACACCGATATACCAGTGCGGACATCTGTTGTAGTACTGCCAAGT
GGAATAAAGTTATCTTCACAATCTCGGCCAACTATGGGTAATGAGATGCA
TGAAAGTGTTCATTTAAATTGTTTGTTTTTACCTCTGGTTGAAGCATTGC
CTTGAAGACTAGAGGAGGCTAAGACACATGACTTAGATCCAGATCTGAAC
TGCTGGATCCAAGGGCTTCCCACAAAAGAACGAGAGCCATTAGTTTTATT
AGGTTGAAATCCAGGTCTTTCGAAATTGATCTTCTTCCAGCAACCACCTC
GAAGAACTTTAAACTGGCCAGAAGAGGTACAGTGTATTTGCCTTGATGAT
TTTGGTCTTTCCAATTTCTCCTTTTGTGAGTTCCAGCCAACAAGATTCAC
AGAATCATATAACTGGTTAATAAATGACGCTTCCATGGAATTAAGGTATA
AACTGTGCTTTTCATCCGTCCATTCAGTAGAGGTAGACTCTGCCACCACA
GAACTCTGTTGTATTATCATCAACACACATCATCAGCAAGTTATTGCAAA
AGGGAAGAAATTAAAACAGTACGTAATTCTTGCCGGCAACCAGATTAGAA
AACAACAATCCAAAATTAAAGTAAATAAATACCAAATGCTCAAAAGAAGA
GCGGTTGTAAATGAAAAATTAAAAGAAGATGCATGCTTGAAAATAAACAA
ATAAAAAATTAGCCTATAAAAGTGTTTTGTTAGTATATTAGGTGGTTTTA
AAGTGAAGCAAGGAAATTGAGCTGCAAAACCATATGAAAATTACACTAGT
CAACTGAGAGGGAGACGCCTCTAGACTCCTCCGAGGCTCAATTCTGTTGA
TACCCTCCATGCAAAAAAACACCTTAAGAAAAGATCCCCAGAGCGATGAA
GACAAATATATTTGAAGGGAGGGGTAGAGATGATGGCAGGTGAGATGTAC
TGAAAAGGTGAT
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