g.barbadense_cottongen_reftransV1_0098021, g.barbadense_cottongen_reftransV1_0098021 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0098021
Unique Nameg.barbadense_cottongen_reftransV1_0098021
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1951
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Dt12chromosomeg.barbadense_cottongen_reftransV1_0098021:1..1951 .
Dt12:63468067..63473792 -		n/a
Homology
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0098021 vs. ExPASy Swiss-Prot
Match: DG783_ARATH (Putative DNA glycosylase At3g47830 OS=Arabidopsis thaliana GN=At3g47830 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.293e-67
Identity = 122/198 (61.62%), Postives = 147/198 (74.24%), Query Frame = 3 
Query:   66 MQKTCKRKQL-QLDGRSQKSP--KSTTE--EPYPCHHRPTAEECRVVRDELLALHGFPPEFLKYRRHRLMKMEPFSNEAQSEPLINSDDGDHKEESVLDGLIKIVLSQNTTELNSQKAFASLKSVFPTWEDVYAAETKSLENAIRCGGLAPRKASCIKNVLSCLHERKGKLCLEYLRDLSVDEMKSELSNFKGVGPKT 644
            M K  KRK+L + DG S K+P  KST +   PYP   RPTAEECR VRD LL+LHGFPPEF  YRR RL       +      L +    + +EESVLDGL+KI+LSQNTTE NSQ+AFASLK+ FP W+DV  AE+KS+ENAIRCGGLAP+KA CIKN+L+ L   +G+LCLEYLR LSV+E+K+ELS+FKGVGPKT
Sbjct:    1 MSKAQKRKRLNKYDGES-KTPANKSTVDGGNPYPTLLRPTAEECRDVRDALLSLHGFPPEFANYRRQRLRSFSAVDDHDTQCNLKSETLNETEEESVLDGLVKILLSQNTTESNSQRAFASLKATFPKWDDVLNAESKSIENAIRCGGLAPKKAVCIKNILNRLQNERGRLCLEYLRGLSVEEVKTELSHFKGVGPKT 197

HSP 2 Score: 135.576 bits (340), Expect = 6.617e-34
Identity = 60/88 (68.18%), Postives = 70/88 (79.55%), Query Frame = 1 
Query: 1486 VACVLMFNLQQDDFPVDTHVFEIARAIGWVPAVADRNKTYLHLNRRIPNELKFDLNCLLYTHGKLCRKCTMKGSSQKKLTSKDCSCPL 1749
            V+CVLMFNLQ +DFPVDTHVFEIA+A+GWVP  ADRNKTY+HLNR+IP+ELKFDLNCLLYTHGK+C  C    +  K   +    CPL
Sbjct:  198 VSCVLMFNLQHNDFPVDTHVFEIAKALGWVPKTADRNKTYVHLNRKIPDELKFDLNCLLYTHGKICSNCKKNVAKPKAKVASPDDCPL 285
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0098021 vs. ExPASy TrEMBL
Match: A0A0D2TFB8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G298100 PE=4 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 1.222e-136
Identity = 197/204 (96.57%), Postives = 200/204 (98.04%), Query Frame = 3 
Query:   66 MQKTCKRKQLQLDGRSQKSPKSTTEEPYPCHHRPTAEECRVVRDELLALHGFPPEFLKYRRHRLMKMEPFSNEAQSEPLINSDDGDHKEESVLDGLIKIVLSQNTTELNSQKAFASLKSVFPTWEDVYAAETKSLENAIRCGGLAPRKASCIKNVLSCLHERKGKLCLEYLRDLSVDEMKSELSNFKGVGPKTNVVRPFSGAYY 677
            MQKTCKRKQLQLDGRS+K+PK TTEEPYPCHHRPTAEECR VRDELLALHGFPPEFLKYRRHRLMKMEPFSNEAQSEPLINSDDGDHKEESVLDGLIKIVLSQNTTELNSQKAFASLKSVFPTWEDVYAAETKSLENAIR GGLAPRKASCIKNVLSCLHERKGKLCLEYLRDLSV E+KSELSNFKGVGPKTNVVRPFSGAYY
Sbjct:    1 MQKTCKRKQLQLDGRSRKTPKLTTEEPYPCHHRPTAEECRAVRDELLALHGFPPEFLKYRRHRLMKMEPFSNEAQSEPLINSDDGDHKEESVLDGLIKIVLSQNTTELNSQKAFASLKSVFPTWEDVYAAETKSLENAIRYGGLAPRKASCIKNVLSCLHERKGKLCLEYLRDLSVAEIKSELSNFKGVGPKTNVVRPFSGAYY 204
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0098021 vs. ExPASy TrEMBL
Match: A0A0D2Q4H9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G298100 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.324e-125
Identity = 186/193 (96.37%), Postives = 189/193 (97.93%), Query Frame = 3 
Query:   66 MQKTCKRKQLQLDGRSQKSPKSTTEEPYPCHHRPTAEECRVVRDELLALHGFPPEFLKYRRHRLMKMEPFSNEAQSEPLINSDDGDHKEESVLDGLIKIVLSQNTTELNSQKAFASLKSVFPTWEDVYAAETKSLENAIRCGGLAPRKASCIKNVLSCLHERKGKLCLEYLRDLSVDEMKSELSNFKGVGPKT 644
            MQKTCKRKQLQLDGRS+K+PK TTEEPYPCHHRPTAEECR VRDELLALHGFPPEFLKYRRHRLMKMEPFSNEAQSEPLINSDDGDHKEESVLDGLIKIVLSQNTTELNSQKAFASLKSVFPTWEDVYAAETKSLENAIR GGLAPRKASCIKNVLSCLHERKGKLCLEYLRDLSV E+KSELSNFKGVGPKT
Sbjct:    1 MQKTCKRKQLQLDGRSRKTPKLTTEEPYPCHHRPTAEECRAVRDELLALHGFPPEFLKYRRHRLMKMEPFSNEAQSEPLINSDDGDHKEESVLDGLIKIVLSQNTTELNSQKAFASLKSVFPTWEDVYAAETKSLENAIRYGGLAPRKASCIKNVLSCLHERKGKLCLEYLRDLSVAEIKSELSNFKGVGPKT 193

HSP 2 Score: 203.756 bits (517), Expect = 2.964e-56
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query: 1486 VACVLMFNLQQDDFPVDTHVFEIARAIGWVPAVADRNKTYLHLNRRIPNELKFDLNCLLYTHGKLCRKCTMKGSSQKKLTSKDCSCPLSVNVVEG 1770
            VACVLMFNLQQDDFPVDTHVFEIARAIGWVPAVADRNKTYLHLNRRIPNELKFDLNCLLYTHGKLCRKCTMKGSSQKKLTSKDCSCPLSVNVVEG
Sbjct:  194 VACVLMFNLQQDDFPVDTHVFEIARAIGWVPAVADRNKTYLHLNRRIPNELKFDLNCLLYTHGKLCRKCTMKGSSQKKLTSKDCSCPLSVNVVEG 288
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0098021 vs. ExPASy TrEMBL
Match: A0A0B0N9N1_GOSAR (Protein ROS1-like protein OS=Gossypium arboreum GN=F383_12085 PE=4 SV=1)

HSP 1 Score: 382.874 bits (982), Expect = 1.434e-124
Identity = 185/193 (95.85%), Postives = 189/193 (97.93%), Query Frame = 3 
Query:   66 MQKTCKRKQLQLDGRSQKSPKSTTEEPYPCHHRPTAEECRVVRDELLALHGFPPEFLKYRRHRLMKMEPFSNEAQSEPLINSDDGDHKEESVLDGLIKIVLSQNTTELNSQKAFASLKSVFPTWEDVYAAETKSLENAIRCGGLAPRKASCIKNVLSCLHERKGKLCLEYLRDLSVDEMKSELSNFKGVGPKT 644
            MQKTCKRKQL+LDGRSQK+PKSTTEEPYPCHHRPT EECR VRDELLALHGFP EFLKYRRHRL+KMEPFSNEAQSEPLINSDDGD KEESVLDGLIKIVLSQNTTELNSQKAFASLKSVFPTWEDVYAAETKSLENAIRCGGLAPRKASCIKNVLSCLHERKGKLCLEYLRDLSVDE+KSELSNFKGVGPKT
Sbjct:    1 MQKTCKRKQLRLDGRSQKTPKSTTEEPYPCHHRPTPEECRAVRDELLALHGFPREFLKYRRHRLIKMEPFSNEAQSEPLINSDDGDDKEESVLDGLIKIVLSQNTTELNSQKAFASLKSVFPTWEDVYAAETKSLENAIRCGGLAPRKASCIKNVLSCLHERKGKLCLEYLRDLSVDEIKSELSNFKGVGPKT 193

HSP 2 Score: 191.815 bits (486), Expect = 5.958e-52
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 1 
Query: 1486 VACVLMFNLQQDDFPVDTHVFEIARAIGWVPAVADRNKTYLHLNRRIPNELKFDLNCLLYTHGKLCRKCTMKGSSQKKLTSKDCSCPLSVNVVEG 1770
            VACVLMFNLQ+DDFPVDTHVFEIARAIGWVPAVADRNKTY HLNRRIPNELKFDLNCLLYTHGKLCRKCTMKGSSQKKLTS+D SCPL VNVVEG
Sbjct:  194 VACVLMFNLQRDDFPVDTHVFEIARAIGWVPAVADRNKTYFHLNRRIPNELKFDLNCLLYTHGKLCRKCTMKGSSQKKLTSEDRSCPLCVNVVEG 288
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0098021 vs. ExPASy TrEMBL
Match: A0A061FTU3_THECC (DNA glycosylase superfamily protein isoform 3 OS=Theobroma cacao GN=TCM_011985 PE=4 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 1.074e-95
Identity = 156/195 (80.00%), Postives = 171/195 (87.69%), Query Frame = 3 
Query:   63 KMQKTCKRKQLQLDGRSQKSPKSTTEEPYPCHHRPTAEECRVVRDELLALHGFPPEFLKYRRHRLMKMEPFSNEAQSEPLINS-DDGDHKEESVLDGLIKIVLSQNTTELNSQKAFASLKSVFPTWEDVYAAETKSLENAIRCGGLAPRKASCIKNVLSCLHERKGKLCLEYLRDLSVDEMKSELSNFKGVGPKT 644
            KMQK+ KRKQL +DG S K+PK TTEEPYP HHRPT +ECR VRDELLALHGFP EFLKYR  RL+K EP + +A+SEPL N+ DDG   EESVLDGL+K VLSQNTTELNSQKAFASLKS FPTWEDV AAE+K+LENAIRCGGLAPRKASCIKNVL CLHERKGKLC EYLRDLS+DE+K+ELSNFKGVGPKT
Sbjct:    2 KMQKSRKRKQLGIDGHS-KTPKITTEEPYPSHHRPTPDECRSVRDELLALHGFPAEFLKYRHQRLIKTEP-TIDAKSEPLNNNYDDG---EESVLDGLVKTVLSQNTTELNSQKAFASLKSAFPTWEDVLAAESKNLENAIRCGGLAPRKASCIKNVLRCLHERKGKLCFEYLRDLSIDEIKAELSNFKGVGPKT 191

HSP 2 Score: 130.568 bits (327), Expect = 2.007e-30
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 1 
Query: 1486 VACVLMFNLQQDDFPVDTHVFEIARAIGWVPAVADRNKTYLHLNRRIPNELKFDLNCLLYTH 1671
            VACVLMFNLQQDDFPVDTHVFEIARAIGWVPA ADR KTYLHLNRRIPN+LKFDLNCLLYTH
Sbjct:  192 VACVLMFNLQQDDFPVDTHVFEIARAIGWVPATADRKKTYLHLNRRIPNKLKFDLNCLLYTH 253
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0098021 vs. ExPASy TrEMBL
Match: A0A061FTD5_THECC (DNA glycosylase superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_011985 PE=4 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 4.689e-95
Identity = 156/195 (80.00%), Postives = 171/195 (87.69%), Query Frame = 3 
Query:   63 KMQKTCKRKQLQLDGRSQKSPKSTTEEPYPCHHRPTAEECRVVRDELLALHGFPPEFLKYRRHRLMKMEPFSNEAQSEPLINS-DDGDHKEESVLDGLIKIVLSQNTTELNSQKAFASLKSVFPTWEDVYAAETKSLENAIRCGGLAPRKASCIKNVLSCLHERKGKLCLEYLRDLSVDEMKSELSNFKGVGPKT 644
            KMQK+ KRKQL +DG S K+PK TTEEPYP HHRPT +ECR VRDELLALHGFP EFLKYR  RL+K EP + +A+SEPL N+ DDG   EESVLDGL+K VLSQNTTELNSQKAFASLKS FPTWEDV AAE+K+LENAIRCGGLAPRKASCIKNVL CLHERKGKLC EYLRDLS+DE+K+ELSNFKGVGPKT
Sbjct:    2 KMQKSRKRKQLGIDGHS-KTPKITTEEPYPSHHRPTPDECRSVRDELLALHGFPAEFLKYRHQRLIKTEP-TIDAKSEPLNNNYDDG---EESVLDGLVKTVLSQNTTELNSQKAFASLKSAFPTWEDVLAAESKNLENAIRCGGLAPRKASCIKNVLRCLHERKGKLCFEYLRDLSIDEIKAELSNFKGVGPKT 191

HSP 2 Score: 170.629 bits (431), Expect = 2.369e-44
Identity = 79/88 (89.77%), Postives = 81/88 (92.05%), Query Frame = 1 
Query: 1486 VACVLMFNLQQDDFPVDTHVFEIARAIGWVPAVADRNKTYLHLNRRIPNELKFDLNCLLYTHGKLCRKCTMKGSSQKKLTSKDCSCPL 1749
            VACVLMFNLQQDDFPVDTHVFEIARAIGWVPA ADR KTYLHLNRRIPN+LKFDLNCLLYTHGKLCRKCTMKGSSQ+K    D SCPL
Sbjct:  192 VACVLMFNLQQDDFPVDTHVFEIARAIGWVPATADRKKTYLHLNRRIPNKLKFDLNCLLYTHGKLCRKCTMKGSSQQKSARNDDSCPL 279
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0098021 vs. ExPASy TrEMBL
Match: A0A061G0N8_THECC (DNA glycosylase superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_011985 PE=4 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 9.592e-93
Identity = 156/195 (80.00%), Postives = 171/195 (87.69%), Query Frame = 3 
Query:   63 KMQKTCKRKQLQLDGRSQKSPKSTTEEPYPCHHRPTAEECRVVRDELLALHGFPPEFLKYRRHRLMKMEPFSNEAQSEPLINS-DDGDHKEESVLDGLIKIVLSQNTTELNSQKAFASLKSVFPTWEDVYAAETKSLENAIRCGGLAPRKASCIKNVLSCLHERKGKLCLEYLRDLSVDEMKSELSNFKGVGPKT 644
            KMQK+ KRKQL +DG S K+PK TTEEPYP HHRPT +ECR VRDELLALHGFP EFLKYR  RL+K EP + +A+SEPL N+ DDG   EESVLDGL+K VLSQNTTELNSQKAFASLKS FPTWEDV AAE+K+LENAIRCGGLAPRKASCIKNVL CLHERKGKLC EYLRDLS+DE+K+ELSNFKGVGPKT
Sbjct:    2 KMQKSRKRKQLGIDGHS-KTPKITTEEPYPSHHRPTPDECRSVRDELLALHGFPAEFLKYRHQRLIKTEP-TIDAKSEPLNNNYDDG---EESVLDGLVKTVLSQNTTELNSQKAFASLKSAFPTWEDVLAAESKNLENAIRCGGLAPRKASCIKNVLRCLHERKGKLCFEYLRDLSIDEIKAELSNFKGVGPKT 191

HSP 2 Score: 131.339 bits (329), Expect = 2.008e-29
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 1 
Query: 1486 VACVLMFNLQQDDFPVDTHVFEIARAIGWVPAVADRNKTYLHLNRRIPNELKFDLNCLLYTH 1671
            VACVLMFNLQQDDFPVDTHVFEIARAIGWVPA ADR KTYLHLNRRIPN+LKFDLNCLLYTH
Sbjct:  192 VACVLMFNLQQDDFPVDTHVFEIARAIGWVPATADRKKTYLHLNRRIPNKLKFDLNCLLYTH 253
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0098021 vs. ExPASy TrEMBL
Match: V4SYH7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021561mg PE=4 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 1.132e-71
Identity = 124/193 (64.25%), Postives = 147/193 (76.17%), Query Frame = 3 
Query:   66 MQKTCKRKQLQLDGRSQKSPKSTTEEPYPCHHRPTAEECRVVRDELLALHGFPPEFLKYRRHRLMKMEPFSNEAQSEPLINSDDGDHKEESVLDGLIKIVLSQNTTELNSQKAFASLKSVFPTWEDVYAAETKSLENAIRCGGLAPRKASCIKNVLSCLHERKGKLCLEYLRDLSVDEMKSELSNFKGVGPKT 644
            MQK+ KRKQ+++          T ++PYP H RPTAEECR +RDELLALHGFPPEF+KYR  RL      + +  S PL  S+  + +EESVLDGL+K +LSQNTTE NS KAFASLKS FPTWE V AAE K +ENAIRCGGLAP KA+CIKN+L CL E KGKLCLEYLR LS+DE+K+ELS F+G+GPKT
Sbjct:    1 MQKSRKRKQVEVT--------ETRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLK--HNMTRDKNSVPLDMSEYDEGEEESVLDGLVKTLLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKT 183

HSP 2 Score: 149.058 bits (375), Expect = 6.567e-37
Identity = 67/88 (76.14%), Postives = 75/88 (85.23%), Query Frame = 1 
Query: 1486 VACVLMFNLQQDDFPVDTHVFEIARAIGWVPAVADRNKTYLHLNRRIPNELKFDLNCLLYTHGKLCRKCTMKGSSQKKLTSKDCSCPL 1749
            VACVLMF+LQQDDFPVDTHVFEI++AIGWVP  ADRNKTYLHLN+RIP ELKFDLNCLLYTHGKLCR C  KG ++++  S    CPL
Sbjct:  184 VACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPL 271
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0098021 vs. ExPASy TrEMBL
Match: V4NHU9_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10010580mg PE=4 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 1.048e-68
Identity = 124/203 (61.08%), Postives = 150/203 (73.89%), Query Frame = 3 
Query:   66 MQKTCKRKQLQLDGRSQKSP--KSTTE--EPYPCHHRPTAEECRVVRDELLALHGFPPEFLKYRRHRLMKMEPFSN-----EAQSEPL-INSDDGDHKEESVLDGLIKIVLSQNTTELNSQKAFASLKSVFPTWEDVYAAETKSLENAIRCGGLAPRKASCIKNVLSCLHERKGKLCLEYLRDLSVDEMKSELSNFKGVGPKT 644
            M K+ KR +L LD    K+P  KST    +PYP H RPT++ECR VRD LL+LHGFPPEF  YRR RL               +SEPL   +D+ D  EE+VLDGL+KI+LSQNTTE+NSQ+AFASLK+ FP WEDV  AE KS+ENAIRCGGLAP+KA CIKN+LS L   +G+LCLEYLR LSV+E+K+ELS+FKG+GPKT
Sbjct:    1 MSKSQKRTRLHLDDGDSKTPATKSTVYGGDPYPSHLRPTSDECRDVRDALLSLHGFPPEFDSYRRQRLRSSSAVDGYHTHCTMKSEPLEAANDEKDEIEETVLDGLVKILLSQNTTEINSQRAFASLKAAFPKWEDVLGAEPKSIENAIRCGGLAPKKAVCIKNILSRLQSERGRLCLEYLRGLSVEEVKTELSHFKGIGPKT 203

HSP 2 Score: 135.576 bits (340), Expect = 6.777e-32
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 1 
Query: 1486 VACVLMFNLQQDDFPVDTHVFEIARAIGWVPAVADRNKTYLHLNRRIPNELKFDLNCLLYTHGKLCRKC 1692
            V+CVLMFNLQ +DFPVDTHVFEIA+AIGWVP  ADRNKTY+HLNRRIP+ELKFDLNCLLYTHGKLC  C
Sbjct:  204 VSCVLMFNLQHNDFPVDTHVFEIAKAIGWVPKTADRNKTYVHLNRRIPDELKFDLNCLLYTHGKLCSNC 272
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0098021 vs. ExPASy TrEMBL
Match: B9RB81_RICCO (Endonuclease III, putative OS=Ricinus communis GN=RCOM_1512450 PE=4 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 3.828e-68
Identity = 121/195 (62.05%), Postives = 143/195 (73.33%), Query Frame = 3 
Query:   66 MQKTCKRK--QLQLDGRSQKSPKSTTEEPYPCHHRPTAEECRVVRDELLALHGFPPEFLKYRRHRLMKMEPFSNEAQSEPLINSDDGDHKEESVLDGLIKIVLSQNTTELNSQKAFASLKSVFPTWEDVYAAETKSLENAIRCGGLAPRKASCIKNVLSCLHERKGKLCLEYLRDLSVDEMKSELSNFKGVGPKT 644
            MQK  KRK    + + +S K      EEPYP H RPT EEC  +RD LLA HGFP EF KYR+ RL       ++      +NSD     EE+VLDGL+K VLSQNTTE+NSQ+AF +LKS FPTW+DV AAE K +ENAIRCGGLAP KASCIKN+L+CL E+KGK+CLEYLRD+SVDE+K+ELS FKGVGPKT
Sbjct:    1 MQKNRKRKLKSAETETKSAKINNGNKEEPYPTHPRPTPEECLCIRDSLLAFHGFPQEFAKYRKQRLG-----GDDDNKSSDVNSDTA---EETVLDGLVKTVLSQNTTEVNSQRAFDNLKSDFPTWQDVLAAEPKWIENAIRCGGLAPAKASCIKNILNCLLEKKGKICLEYLRDMSVDEIKAELSQFKGVGPKT 187

HSP 2 Score: 155.606 bits (392), Expect = 4.425e-39
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 1 
Query: 1486 VACVLMFNLQQDDFPVDTHVFEIARAIGWVPAVADRNKTYLHLNRRIPNELKFDLNCLLYTHGKLCRKCTMKGSSQKKLTSKDCSCPL 1749
            VACVLMF+LQQ+DFPVDTHVFEIA+A+GWVP VADRNKTYLHLN+RIPNELKFDLNCLLYTHGKLCRKC  K  +Q +  S D SCPL
Sbjct:  188 VACVLMFHLQQEDFPVDTHVFEIAKALGWVPEVADRNKTYLHLNQRIPNELKFDLNCLLYTHGKLCRKCIKKRGNQSRKESHDDSCPL 275
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0098021 vs. ExPASy TrEMBL
Match: A0A087GW32_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G100200 PE=4 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.187e-66
Identity = 120/194 (61.86%), Postives = 147/194 (75.77%), Query Frame = 3 
Query:   66 MQKTCKRKQLQLDGRSQKSPKS-TTEEPYPCHHRPTAEECRVVRDELLALHGFPPEFLKYRRHRLMKMEPFSNEAQSEPLINSDDGDHKEESVLDGLIKIVLSQNTTELNSQKAFASLKSVFPTWEDVYAAETKSLENAIRCGGLAPRKASCIKNVLSCLHERKGKLCLEYLRDLSVDEMKSELSNFKGVGPKT 644
            M K+ KRK+L  D    K+P + +T +PY    +PT EECR VRD LL+LHGFPPEF  YRR RL  ++      +SEPL      + KEESVLDGL+KI+LSQNTTELNSQ+AFASLKS FP WEDV  AE+K +ENAIRCGGLAP+KA CIKN+L+ L   +G+LCLEYLR LSV+E+K+ELS+FKG+GPKT
Sbjct:    1 MSKSQKRKRLHEDDGDSKNPANKSTGDPYASLLKPTPEECREVRDALLSLHGFPPEFAIYRRQRLRSLD---GTVKSEPL--DAVKEEKEESVLDGLVKILLSQNTTELNSQRAFASLKSAFPKWEDVLVAESKLIENAIRCGGLAPKKALCIKNILNRLQNERGRLCLEYLRGLSVEEVKTELSHFKGIGPKT 189

HSP 2 Score: 133.265 bits (334), Expect = 3.973e-31
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 1 
Query: 1486 VACVLMFNLQQDDFPVDTHVFEIARAIGWVPAVADRNKTYLHLNRRIPNELKFDLNCLLYTHGKLCRKC---TMKGSSQKKLTSKDCSCPL 1749
            ++CVLMFNLQ +D PVDTHVFEI++A+GWVP  ADRNKTY HLNRRIP+ELKFDLNCLLYTHGKLC  C     K  ++ K++S D  CPL
Sbjct:  190 ISCVLMFNLQHNDLPVDTHVFEISKALGWVPKTADRNKTYDHLNRRIPDELKFDLNCLLYTHGKLCSNCKKNVAKPKAKAKVSSTD-DCPL 279
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0098021 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
DG783_ARATH2.293e-6761.62Putative DNA glycosylase At3g47830 OS=Arabidopsis ... [more]
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BLAST of g.barbadense_cottongen_reftransV1_0098021 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2TFB8_GOSRA1.222e-13696.57Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2Q4H9_GOSRA2.324e-12596.37Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0N9N1_GOSAR1.434e-12495.85Protein ROS1-like protein OS=Gossypium arboreum GN... [more]
A0A061FTU3_THECC1.074e-9580.00DNA glycosylase superfamily protein isoform 3 OS=T... [more]
A0A061FTD5_THECC4.689e-9580.00DNA glycosylase superfamily protein isoform 2 OS=T... [more]
A0A061G0N8_THECC9.592e-9380.00DNA glycosylase superfamily protein isoform 1 OS=T... [more]
V4SYH7_9ROSI1.132e-7164.25Uncharacterized protein OS=Citrus clementina GN=CI... [more]
V4NHU9_EUTSA1.048e-6861.08Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
B9RB81_RICCO3.828e-6862.05Endonuclease III, putative OS=Ricinus communis GN=... [more]
A0A087GW32_ARAAL1.187e-6661.86Uncharacterized protein OS=Arabis alpina GN=AALP_A... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011257DNA glycosylaseGENE3D1.10.340.30coord: 90..193
e-value: 1.4E-17
score: 63.4
IPR011257DNA glycosylaseSUPERFAMILY48150DNA-glycosylasecoord: 90..193
IPR003265HhH-GPD domainPFAMPF00730HhH-GPDcoord: 97..155
e-value: 2.1E-5
score: 24.8
NoneNo IPR availablePANTHERPTHR10359A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE IIIcoord: 26..193
NoneNo IPR availablePANTHERPTHR10359:SF31DNA GLYCOSYLASE SUPERFAMILY PROTEINcoord: 26..193

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0098021 ID=g.barbadense_cottongen_reftransV1_0098021; Name=g.barbadense_cottongen_reftransV1_0098021; organism=Gossypium barbadense; type=contig; length=1951bp
GATGACTGTAAAAAAATTTCAAAAGTGCGGTATCGTCTGTCATTAACAAT
AGCGCGAAATAAAAAATGCAGAAAACCTGCAAAAGAAAGCAGCTTCAGCT
GGATGGGCGGTCCCAGAAATCACCCAAATCAACCACTGAAGAGCCATACC
CATGTCACCATAGACCCACCGCTGAAGAATGTAGAGTCGTAAGAGACGAG
CTCTTGGCTCTCCATGGTTTCCCTCCAGAATTCCTCAAGTACCGCCGTCA
CAGACTCATGAAAATGGAGCCCTTCAGTAACGAAGCACAGTCAGAGCCGT
TGATTAACAGTGATGATGGGGATCATAAGGAAGAAAGCGTGTTGGATGGT
CTGATCAAAATTGTGCTCTCTCAGAATACTACTGAGCTTAATTCCCAAAA
GGCTTTTGCTTCTCTCAAGTCTGTTTTTCCCACCTGGGAAGATGTATATG
CTGCTGAAACCAAAAGTCTAGAAAATGCAATAAGATGTGGCGGCTTAGCA
CCAAGGAAAGCTTCTTGTATTAAGAATGTGTTGAGTTGTCTGCATGAGAG
AAAAGGCAAACTCTGCTTGGAGTACTTACGAGATTTGTCGGTTGATGAAA
TGAAGTCTGAGCTCTCCAATTTTAAAGGAGTTGGCCCTAAGACAAATGTT
GTAAGGCCTTTTTCAGGTGCTTATTATTAAGGCAGAAAGTGCTACAAGTG
CCCTTTGATCTGTACCCATGGAATTAATTGTTGAAAATATCTCAGCATGG
AAAATAGTGACAAGCTGCAGGATCCTGCGCTCAAGTTTGATGAATTCTCT
ATGTATTTTCACTTACATAATTGCATGTGTGTGTAACCGTTGATGAATGA
ATCAGTGTCCTGTTGAATTATGATGTTAAGGATATGTTCATTGACTTTGC
CAATGTTCTATATGAAATCTATTGAAATTTGAGAAAGGAAAGAAAAATGG
AATATATAAGCTTTGTTATCAGTGTCGATCATTTTTAAGCCTGTGCTATT
CTTCCTGATCATCTTCATTTTATCTAATACATAAATGTTATCTTCAGTTA
TTTAATTTGGCAAGGGTGTTGAATTGAATTTCACAATCACCAGAATATGG
TATTACTCTTTTTACTGCCATCATTTCATTGGTATTTGACTTAAATTTAT
CACTTGTATTTTTAGAGTAAATTTATCACATGCTTTTGTCATTCAATCCA
TGCTAGTTTGCATGTTATTCACAGAATTACAGCATGTATGTTAATCAGAT
ATCTGTATGCTTCAGACCTTGTATCAAACTGACTAGGTTTAGGTAGTGTG
TTAAAGATTTCTATTACTGGTCATTTCCAATGCTGGTCTCTCGTTTAGAT
TTAATATTTTATCTGTTTAAACTCTTTGGATTGTGATCTGTTTTTGGAGT
TATCACGTGTTTTAAATTGCTTAATATTACCAGCATTGAAATTTCAGATT
AACCATACAAATCCTCAACTCTCAATGCCTGACAGGTGGCTTGTGTTTTG
ATGTTCAATCTTCAGCAAGATGATTTCCCAGTGGACACACATGTGTTTGA
GATTGCTAGGGCCATCGGTTGGGTCCCTGCTGTAGCGGACAGGAATAAGA
CATACCTTCATCTCAACCGTAGGATCCCAAACGAACTTAAGTTTGATCTG
AACTGTCTTCTGTATACACATGGTAAGCTTTGTCGCAAATGCACGATGAA
AGGAAGTAGCCAGAAAAAGTTGACATCCAAAGATTGTTCCTGTCCCCTAA
GTGTAAATGTTGTTGAGGGTTAAATTTTTTAGAATTAAGATTAAATTGAC
ATAATATATAAATATTGAGGGTTAAAGTTATTATTATGCTAAATTAAAAA
GCTGTCATGTCATATTCTTGTTAGCTATTTAATAGTTAGTGATAAAAAAA
AAGACAAAATCAAATAATTGAGTGATATTTTGTAACTTTTAGTAATTGGT
G
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011257DNA_glycosylase
IPR003265HhH-GPD_domain
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006284base-excision repair
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity