g.barbadense_cottongen_reftransV1_0097920, g.barbadense_cottongen_reftransV1_0097920 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0097920
Unique Nameg.barbadense_cottongen_reftransV1_0097920
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2035
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Dt05chromosomeg.barbadense_cottongen_reftransV1_0097920:21..2035 .
Dt05:29537521..29539636 -
Homology
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BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: NRPE7_ARATH (DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana GN=NRPE7 PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.385e-86
Identity = 119/174 (68.39%), Postives = 157/174 (90.23%), Query Frame = 3 
Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            LKVQ+PWNV+IPA+++DAKGLMLK+AI++ L++ FA KKATK+LGY++AVTTL+ IGEG++R+++G+VLFPV+FSG+TFK+++GEI+ GVVHK+LKHGVF+RCGP++N+YLS+ KMPDY Y+PGEN IFMN+K S+I  +  VR +VIG KWME EREFQAL SLEGDYLGP+S
Sbjct:    3 LKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPLS 176
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: NRPD7_ARATH (DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana GN=NRPD7 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 9.294e-63
Identity = 97/172 (56.40%), Postives = 136/172 (79.07%), Query Frame = 3 
Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGP 1613
            +KV++PW+V IPA+ +D  GLML++AIVIRL++ F+ +KATKDLGY +  T LE+IGEG++++ +G++ FPVVF+GI FKM++GEI+ GVVHK+ K GVFL+ GP + IYLSH+KMP Y ++PGEN  FMN   S+I     VRF+V+ T+W EAE++F AL S++GD LGP
Sbjct:    3 IKVKLPWDVTIPAEDMDT-GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPGYEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWREAEKDFMALASIDGDNLGP 173
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BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7L_ARATH (DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana GN=NRPB7L PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 9.389e-23
Identity = 67/190 (35.26%), Postives = 103/190 (54.21%), Query Frame = 3 
Query: 1101 KVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVR-------QNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPG-----ENGIFMNDKHSKIDKDVIVRFIVIGTKWME----AEREFQALVSLEGD-YLGPVS 1619
            +V+M  +V I A  L+  G    + I+ RL+ +   +KA ++ G+++ +T L+SIG  +           +  + FPV F+  TF   RG+ILQG V K+L +G F+R GP++  YLS +KMP YHYV       E   F  D  SKI   V+VRF V+  ++ E       ++  L +LEG+   GP+S
Sbjct:    4 EVEMARDVAICAKHLN--GQSPHQPILCRLLQDLIHEKACREHGFYLGITALKSIGNNKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYLSLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVLATLEGNGSFGPIS 191
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BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.798e-14
Identity = 51/156 (32.69%), Postives = 88/156 (56.41%), Query Frame = 3 
Query: 1155 GLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIF-MNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            G  L+  +V +LM +     + +  G+ +AVT +E+IG+G +R  +G V FPV +  + F+ ++GEIL+ VV  + K G F   GPVQ    +H+   D  +  G+   +  +D   KI KD  VR  +IGT+ ++A   F  + +++ D+LG ++
Sbjct:   19 GRNLRDNLVSKLMKDVEGTCSGRH-GFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVIN 171
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: NRPB7_ARATH (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.471e-13
Identity = 49/156 (31.41%), Postives = 88/156 (56.41%), Query Frame = 3 
Query: 1155 GLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIF-MNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            G  LK+ +V +LM +     + +  G+ +A+T +++IG+G +R  +G V FPV +  + F+ ++GEIL+ VV  + K G F   GPVQ     H+   D  +  G+   +  +D   KI K+  VR  +IGT+ ++A   F  + +++ D+LG ++
Sbjct:   19 GRNLKENLVSKLMKDVEGTCSGRH-GFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTR-VDATAIF-CVGTIKDDFLGVIN 171
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BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7_DANRE (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio GN=polr2g PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.729e-11
Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = 3 
Query: 1215 ATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMN--DKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
             T   G+ +AVTT+++IG G ++   G VL+PV +  I F+ ++GE++  VV ++ K G+F   GP+      H    +  + P  N       D+   I +D  +R  ++GT+    + +  A+ SL  DYLG VS
Sbjct:   38 CTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7_RAT (DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus GN=Polr2g PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.093e-11
Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = 3 
Query: 1215 ATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMN--DKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
             T   G+ +AVTT+++IG G ++   G VL+PV +  I F+ ++GE++  VV ++ K G+F   GP+      H    +  + P  N       D+   I +D  +R  ++GT+    + +  A+ SL  DYLG VS
Sbjct:   38 CTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7_MOUSE (DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus GN=Polr2g PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.093e-11
Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = 3 
Query: 1215 ATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMN--DKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
             T   G+ +AVTT+++IG G ++   G VL+PV +  I F+ ++GE++  VV ++ K G+F   GP+      H    +  + P  N       D+   I +D  +R  ++GT+    + +  A+ SL  DYLG VS
Sbjct:   38 CTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
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BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7_HUMAN (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens GN=POLR2G PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.093e-11
Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = 3 
Query: 1215 ATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMN--DKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
             T   G+ +AVTT+++IG G ++   G VL+PV +  I F+ ++GE++  VV ++ K G+F   GP+      H    +  + P  N       D+   I +D  +R  ++GT+    + +  A+ SL  DYLG VS
Sbjct:   38 CTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Match: RPB7_BOVIN (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.093e-11
Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = 3 
Query: 1215 ATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMN--DKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
             T   G+ +AVTT+++IG G ++   G VL+PV +  I F+ ++GE++  VV ++ K G+F   GP+      H    +  + P  N       D+   I +D  +R  ++GT+    + +  A+ SL  DYLG VS
Sbjct:   38 CTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV--DKNDIFAIGSLMDDYLGLVS 172
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A0D2QQ09_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_009G298700 PE=4 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 6.816e-116
Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 3 
Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKD GYFMAVTTLESIGEGRVRQN+GDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS
Sbjct:   30 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDRGYFMAVTTLESIGEGRVRQNTGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 203
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BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A0B0PUV3_GOSAR (DNA-directed RNA polymerase II subunit RPB7 OS=Gossypium arboreum GN=F383_15637 PE=4 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 8.235e-116
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 3 
Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDY YVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS
Sbjct:   24 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYQYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 197
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A0D2UVK8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G298700 PE=4 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 1.155e-115
Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 3 
Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKD GYFMAVTTLESIGEGRVRQN+GDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS
Sbjct:    9 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDRGYFMAVTTLESIGEGRVRQNTGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 182
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A0D2SA07_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G298700 PE=4 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 2.216e-115
Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 3 
Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKD GYFMAVTTLESIGEGRVRQN+GDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS
Sbjct:    3 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDRGYFMAVTTLESIGEGRVRQNTGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 176
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A061FY25_THECC (RNA polymerase Rpb7-like, N-terminal domain OS=Theobroma cacao GN=TCM_044847 PE=4 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.194e-107
Identity = 156/174 (89.66%), Postives = 172/174 (98.85%), Query Frame = 3 
Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            LKVQ+PWNVIIPADSL AKGLML+KAIV+RL+D+FACKKATKDLGYF+AVTTLESIG+G+VRQN+GDVLFPVVFSGITFKM+RGEIL+GVVHKILKHGVFLRCGPVQNIYLSH+KMPDYHYVPGEN IFMN+KHSKI+KDV+VRFIVIGTKW+EAEREFQALVSLEGDYLGPVS
Sbjct:    3 LKVQLPWNVIIPADSLGAKGLMLQKAIVVRLLDDFACKKATKDLGYFIAVTTLESIGDGKVRQNTGDVLFPVVFSGITFKMFRGEILEGVVHKILKHGVFLRCGPVQNIYLSHLKMPDYHYVPGENAIFMNEKHSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A061FRK7_THECC (RNA polymerase Rpb7-like, N-terminal domain isoform 1 OS=Theobroma cacao GN=TCM_044843 PE=4 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 7.974e-107
Identity = 156/174 (89.66%), Postives = 171/174 (98.28%), Query Frame = 3 
Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            LKVQ+PWNVIIPADSL AKGLML+KAIV+ L+D+FACKKATKDLGYF+AVTTLESIG+G+VRQN+GDVLFPVVFSGITFKM+RGEIL+GVVHKILKHGVFLRCGPVQNIYLSH+KMPDYHYVPGEN IFMNDKHSKI+KDV+VRFIVIGTKW+EAEREFQALVSLEGDYLGPVS
Sbjct:    3 LKVQLPWNVIIPADSLGAKGLMLQKAIVVHLLDDFACKKATKDLGYFIAVTTLESIGDGKVRQNTGDVLFPVVFSGITFKMFRGEILEGVVHKILKHGVFLRCGPVQNIYLSHLKMPDYHYVPGENAIFMNDKHSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A061FRL0_THECC (RNA polymerase Rpb7-like, N-terminal domain OS=Theobroma cacao GN=TCM_044852 PE=4 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 1.448e-104
Identity = 154/174 (88.51%), Postives = 169/174 (97.13%), Query Frame = 3 
Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            LKVQ+PWNVIIPADSL A+GLML+KAIV+RL D+FACKKATKDLGYF+AVTTLESIG+G+VRQN+GDV FPVVFSGITFKM+RGEIL+GVVHKILKHGVFLRCGPVQNIYLSH+KMPDYHYVPGEN IFMNDKHSKI+KDV+VRFIVIGTKW+EAEREFQAL SLEGDYLGPVS
Sbjct:    3 LKVQLPWNVIIPADSLGAEGLMLQKAIVVRLWDDFACKKATKDLGYFIAVTTLESIGDGKVRQNTGDVPFPVVFSGITFKMFRGEILEGVVHKILKHGVFLRCGPVQNIYLSHLKMPDYHYVPGENAIFMNDKHSKIEKDVVVRFIVIGTKWLEAEREFQALFSLEGDYLGPVS 176
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: A0A0A0LKQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G193330 PE=4 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.943e-98
Identity = 145/174 (83.33%), Postives = 169/174 (97.13%), Query Frame = 3 
Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            LKVQ+PWNVIIPA++LDAKGLML+++I+IRL+DEFA KKATKDLGYF+AVTTLE+IGEG+VRQ +GDVLFPV+FSGITFK+YRGEIL+GVVHK+LKHGVFLRCGPV+NIYLS++KMPDY YVPGEN +F+NDK SKI+KDV+VRFIVIGTKW+EAEREFQALVSLEGDYLGPVS
Sbjct:    3 LKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGEGKVRQ-TGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDYRYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 175
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: B9S9D8_RICCO (DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative OS=Ricinus communis GN=RCOM_0884250 PE=4 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 8.300e-96
Identity = 139/174 (79.89%), Postives = 168/174 (96.55%), Query Frame = 3 
Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            LKVQ+PWNVII A+ LDAKGLML+++I+IRL+++FA KKATKDLGY++AVTTLESIGEG+VR+++GDVLFPVVF+GITFK++RGEIL+GVVHK+LKHGVF+RCGP++NIYLS +KMPDYHYVPGEN +F+NDK SKI+KDV+VRFIVIGTKW+EAEREFQALVSLEGDYLGPVS
Sbjct:    3 LKVQLPWNVIISAEHLDAKGLMLQRSIIIRLLEDFASKKATKDLGYYLAVTTLESIGEGKVREHTGDVLFPVVFNGITFKIFRGEILEGVVHKVLKHGVFIRCGPIENIYLSCMKMPDYHYVPGENPVFLNDKTSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
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BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Match: B9HKE3_POPTR (RNA polymerase Rpb7 N-terminal domain-containing family protein OS=Populus trichocarpa GN=POPTR_0008s16160g PE=4 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 2.376e-94
Identity = 137/174 (78.74%), Postives = 166/174 (95.40%), Query Frame = 3 
Query: 1098 LKVQMPWNVIIPADSLDAKGLMLKKAIVIRLMDEFACKKATKDLGYFMAVTTLESIGEGRVRQNSGDVLFPVVFSGITFKMYRGEILQGVVHKILKHGVFLRCGPVQNIYLSHIKMPDYHYVPGENGIFMNDKHSKIDKDVIVRFIVIGTKWMEAEREFQALVSLEGDYLGPVS 1619
            LKVQ+PWNVIIPA++LDAKGLML+++IV+RL+D+FA K ATKDLGY++AV+TLESIGEG+VRQ++GDVLFPVVFSGITFK++RGEIL G+VHK+LKHGV LRCGP++NIYLS +KMPDY YVPGEN +F+NDK SKI+KDV+VRF+V+GTKW+EAEREFQALVSLEGDYLGPVS
Sbjct:    3 LKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKGATKDLGYYLAVSTLESIGEGKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMKMPDYRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS 176
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 13
Match NameE-valueIdentityDescription
NRPE7_ARATH3.385e-8668.39DNA-directed RNA polymerase V subunit 7 OS=Arabido... [more]
NRPD7_ARATH9.294e-6356.40DNA-directed RNA polymerase IV subunit 7 OS=Arabid... [more]
RPB7L_ARATH9.389e-2335.26DNA-directed RNA polymerase subunit 7-like protein... [more]
RPB7_SOYBN1.798e-1432.69DNA-directed RNA polymerase II subunit RPB7 OS=Gly... [more]
NRPB7_ARATH1.471e-1331.41DNA-directed RNA polymerase II subunit 7 OS=Arabid... [more]
RPB7_DANRE1.729e-1131.39DNA-directed RNA polymerase II subunit RPB7 OS=Dan... [more]
RPB7_RAT2.093e-1131.39DNA-directed RNA polymerase II subunit RPB7 OS=Rat... [more]
RPB7_MOUSE2.093e-1131.39DNA-directed RNA polymerase II subunit RPB7 OS=Mus... [more]
RPB7_HUMAN2.093e-1131.39DNA-directed RNA polymerase II subunit RPB7 OS=Hom... [more]
RPB7_BOVIN2.093e-1131.39DNA-directed RNA polymerase II subunit RPB7 OS=Bos... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0097920 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2QQ09_GOSRA6.816e-11698.85Uncharacterized protein (Fragment) OS=Gossypium ra... [more]
A0A0B0PUV3_GOSAR8.235e-11699.43DNA-directed RNA polymerase II subunit RPB7 OS=Gos... [more]
A0A0D2UVK8_GOSRA1.155e-11598.85Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2SA07_GOSRA2.216e-11598.85Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061FY25_THECC4.194e-10789.66RNA polymerase Rpb7-like, N-terminal domain OS=The... [more]
A0A061FRK7_THECC7.974e-10789.66RNA polymerase Rpb7-like, N-terminal domain isofor... [more]
A0A061FRL0_THECC1.448e-10488.51RNA polymerase Rpb7-like, N-terminal domain OS=The... [more]
A0A0A0LKQ1_CUCSA1.943e-9883.33Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
B9S9D8_RICCO8.300e-9679.89DNA-directed RNA polymerase II 19 kD polypeptide r... [more]
B9HKE3_POPTR2.376e-9478.74RNA polymerase Rpb7 N-terminal domain-containing f... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 87..175
e-value: 1.4E-21
score: 75.9
NoneNo IPR availablePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 2..176
NoneNo IPR availablePANTHERPTHR12709:SF3DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 7-RELATEDcoord: 2..176
IPR005576RNA polymerase Rpb7, N-terminalPFAMPF03876SHS2_Rpb7-Ncoord: 26..81
e-value: 1.9E-6
score: 28.0
IPR005576RNA polymerase Rpb7, N-terminalGENE3D3.30.1490.120coord: 1..83
e-value: 5.1E-14
score: 51.8
IPR005576RNA polymerase Rpb7, N-terminalSUPERFAMILY88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 1..81
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 85..174

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0097920 ID=g.barbadense_cottongen_reftransV1_0097920; Name=g.barbadense_cottongen_reftransV1_0097920; organism=Gossypium barbadense; type=contig; length=2035bp
CTTGTTTATTCTATTGCATGTTTGACTGATTCTATTGTTTTCCGAATGGC
TTGTGATTTCGACTAGTTGAGTTATATTTTATTTGCATTTCTTGAAATTT
CGTAATGTTAACATGGAGTTCATGTTTTGGTTTATGTATTAAGTTGATGT
TTTTCTTTAGAGAAGATTGATTAGTTGGGTGAGATTCTATATTCAGGATT
TAATCACGAATTCTGCCTGGTAGTATGTGTGGATGCGGATCAGAAAATTG
CCTTCGTTTGTGTTTATGGATTATCACTATTGTTGTTGTTTAATCGGGCA
TGTAATGTAATGATGATAGTTTAGATTAATGTTACTTGGACTCGAGTGTG
ATAGCCGGATATGGTACGTGTCCAACACAGTATGTTTAAATATTTCATGC
ATTTGGAGGACCATTGGAGGTTCAGAACCCCACACCCATATATGCATGAT
ATATTCACTTTTTTTTCTTATTTTTTCCCTTGCATTTGGAGGATCATTTG
AGGTTATGATCCCATACCCTTGTTCGGATGTATGGCAAACATGGATAATT
CACACAAACAAAAAAAGAGATGAGTCAGAGCAACGTAGGTATAACACCTC
TGGGAGTTTGTTAATCATACACATTCGTTTGGAACTACTTTGCTTTTAAA
AGGGTTTCCCTTGTTTTGTGAAGAATTTCAATGGTAATGTTCTGATTTGT
CAATGACTATGAAAATTTAGTTATGAGTTGTGGTTCGTTGAGCCTACTGA
ATTTGCTCACCTTGTTTTGTTTAGAAAATTTCAATTTCTTTTGAAGGAAA
TGGCATGGTTTTCCATTCATAGTATCTGTTTTCTGTTGCTTCATGTTTGA
TTATCGGTTTGGTGTTATCAGTATTTATGGAATTGAGAATTAGTGATGAT
GTGAAACGGGCATTGTTGGGTTTATTCATTACAATTGGGTAATGTTTTAA
GTGGTTGAAAACTAAGTTGTAGGTGAACCTTTTTCAGTTTTTGAATTCTT
CTAGATTGGTATACCATTTTTTGGCTCTGAAGGACATTAATTTCATTGTG
AGTTTCGTTTTTTTTTTGTTTTTAATGTTGTTTTCTGCAGAATGTTTCTC
AAGGTGCAGATGCCATGGAATGTCATAATTCCTGCTGACAGCTTGGATGC
CAAAGGCTTGATGCTCAAAAAGGCAATAGTGATCCGCCTTATGGATGAAT
TTGCTTGCAAGAAGGCCACCAAGGATCTCGGATATTTCATGGCTGTAACA
ACCCTAGAGAGCATTGGCGAGGGCAGAGTTAGACAGAACTCAGGAGATGT
GCTTTTCCCTGTTGTCTTCAGCGGAATTACATTCAAGATGTACAGAGGAG
AGATTCTGCAAGGGGTTGTACATAAGATACTAAAACATGGAGTGTTTTTG
AGGTGTGGACCAGTCCAAAACATATATTTGTCTCACATAAAAATGCCTGA
CTACCACTATGTGCCCGGGGAGAATGGTATATTCATGAACGACAAACACT
CAAAGATTGATAAAGATGTGATCGTTAGGTTTATCGTGATTGGGACCAAA
TGGATGGAGGCCGAGAGGGAATTTCAGGCGTTGGTGAGTTTGGAAGGTGA
CTACTTAGGACCAGTTTCCTGAATATATGACTTTGGTCAACCTATGTACG
TATTAGGAACATGTAGTTTTTGCGACTATAGGGCTAACTTATGATGTTAA
CTTGGTTTTATAGCTTTTGTAAAACTCCTCGCTTATAGGTGATGGAAGTG
ATGGTATATTTGCAATATTCATAAATTTAGTGTTCCATTGTTCAGCCTCC
TTCCTAATACCTTGGATCAATGGTTGAAGGATCGTGTCTGTGTCAAAACT
TTTCTTCACTAGCTTCGCATATAAGAGGAGCTCTGTAATTGTGAAGTGTG
TTGCAAGGTATTGCAATTGTGCAGTTAGCAACCTCTTGAATTATACCATG
TTATGCCGTCGCATATTAACTGTTTCCCTAGATATGAAATGAAAGCAACA
CAATTATGGTATGCTGGTTCAAACACATTCTGCTC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR005576Rpb7-like_N
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006351DNA-templated transcription