g.barbadense_cottongen_reftransV1_0097856, g.barbadense_cottongen_reftransV1_0097856 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy Swiss-Prot
Match: SRC30_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana GN=SCL30 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 3.469e-16 Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689 PRGFAFV+FVD+YDA EAQ MN + F GREI+VVVA+ESRKRPEEMR K R R Sbjct: 87 PRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESRKRPEEMRVKTRTR 140 HSP 2 Score: 73.1738 bits (178), Expect = 6.772e-13 Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 1 Query: 70 LLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 LLVRNIPLDCRPEELR PFERFG VRDVYIP+DYY+G Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSG 85
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy Swiss-Prot
Match: SL30A_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana GN=SCL30A PE=1 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 6.778e-10 Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKAR 1683 PRGF F+QF+D DAAEA+ +M+G + GRE++VV A E+RK+P EMR + R Sbjct: 77 PRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKPTEMRTRDR 128 HSP 2 Score: 60.077 bits (144), Expect = 1.588e-8 Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1 Query: 67 SLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 SLLVRN+ DCR E+LR PFE+FG V+D+Y+P+DYYTG Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTG 75
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy Swiss-Prot
Match: SRC28_ARATH (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana GN=SCL28 PE=1 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 1.044e-9 Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMR 1671 PRGF FV++ + DAAEA RMN K+ GGREI++V A E+RK P+EMR Sbjct: 87 PRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAEENRKTPQEMR 134 HSP 2 Score: 57.7658 bits (138), Expect = 6.013e-8 Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = 1 Query: 67 SLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 LL+RN+PLD RP +LR FERFG ++D+Y+P++YYTG Sbjct: 48 GLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTG 85
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy Swiss-Prot
Match: SRC33_ARATH (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana GN=SCL33 PE=1 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 1.618e-8 Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEM 1668 PRGF FVQF+D DAA+A+ M+G + GRE++VV A E+RK+P EM Sbjct: 76 PRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEM 122 HSP 2 Score: 56.225 bits (134), Expect = 3.211e-7 Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 1 Query: 67 SLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 SLLVRN+ DCR E+LR FE+FG V+D+Y+P+DYYTG Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTG 74
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: A0A0B0MXS2_GOSAR (Serine/arginine-rich splicing factor 12 OS=Gossypium arboreum GN=F383_31257 PE=4 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 1.094e-26 Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 1 Query: 1519 CRAPRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689 +APRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR Sbjct: 10 TKAPRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 66
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: A0A0D2RAY9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G201600 PE=4 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.430e-26 Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 1 Query: 1516 FCRAPRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689 + APRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR Sbjct: 91 YTGAPRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 148 HSP 2 Score: 98.5969 bits (244), Expect = 2.260e-19 Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 Query: 43 RRREQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 RRREQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG Sbjct: 48 RRREQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 93
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: A0A0D2SW68_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G201600 PE=4 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 5.996e-26 Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 1 Query: 1516 FCRAPRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689 + APRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR Sbjct: 91 YTGAPRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 148 HSP 2 Score: 99.3673 bits (246), Expect = 1.774e-19 Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 Query: 43 RRREQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 RRREQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG Sbjct: 48 RRREQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 93
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: A0A0D2TDW3_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_011G262000 PE=4 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.321e-20 Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689 PRGFAFVQFVDSYDA+EAQ RMNGKIF GREISVVVAAE+RKRPEEMRHK+R R Sbjct: 112 PRGFAFVQFVDSYDASEAQRRMNGKIFAGREISVVVAAETRKRPEEMRHKSRAR 165 HSP 2 Score: 89.3521 bits (220), Expect = 2.955e-16 Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 1 Query: 52 EQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 EQ++GSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG Sbjct: 68 EQSHGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 110
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: A0A0D2UY68_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G262000 PE=4 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.197e-20 Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689 PRGFAFVQFVDSYDA+EAQ RMNGKIF GREISVVVAAE+RKRPEEMRHK+R R Sbjct: 86 PRGFAFVQFVDSYDASEAQRRMNGKIFAGREISVVVAAETRKRPEEMRHKSRAR 139 HSP 2 Score: 89.3521 bits (220), Expect = 3.813e-16 Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 1 Query: 52 EQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 EQ++GSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG Sbjct: 42 EQSHGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 84
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: A0A0D2RT72_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_011G262000 PE=4 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.500e-20 Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689 PRGFAFVQFVDSYDA+EAQ RMNGKIF GREISVVVAAE+RKRPEEMRHK+R R Sbjct: 112 PRGFAFVQFVDSYDASEAQRRMNGKIFAGREISVVVAAETRKRPEEMRHKSRAR 165 HSP 2 Score: 89.7373 bits (221), Expect = 3.077e-16 Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 1 Query: 52 EQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 EQ++GSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG Sbjct: 68 EQSHGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 110
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: A0A061FLD3_THECC (SC35-like splicing factor 30 isoform 3 OS=Theobroma cacao GN=TCM_042751 PE=4 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 7.338e-20 Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKAR 1683 PRGFAFVQFVDSY+AAEAQ RMNGK+F GREISVVVAAE+RKRPEEMRHKAR Sbjct: 82 PRGFAFVQFVDSYEAAEAQRRMNGKLFAGREISVVVAAETRKRPEEMRHKAR 133 HSP 2 Score: 90.8929 bits (224), Expect = 1.177e-16 Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 Query: 52 EQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 EQN+GSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG Sbjct: 38 EQNHGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 80
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: A0A061FTS6_THECC (SC35-like splicing factor 30 isoform 1 OS=Theobroma cacao GN=TCM_042751 PE=4 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 9.052e-20 Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKAR 1683 PRGFAFVQFVDSY+AAEAQ RMNGK+F GREISVVVAAE+RKRPEEMRHKAR Sbjct: 82 PRGFAFVQFVDSYEAAEAQRRMNGKLFAGREISVVVAAETRKRPEEMRHKAR 133 HSP 2 Score: 92.0485 bits (227), Expect = 4.988e-17 Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 Query: 52 EQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 EQN+GSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG Sbjct: 38 EQNHGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 80
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: M5X0X0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010993mg PE=4 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.442e-18 Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689 PRGFAFVQFVDSY+AAEAQ+ MNGKIF GREISVVVAAE+RKRPEEMR + R R Sbjct: 79 PRGFAFVQFVDSYEAAEAQYHMNGKIFAGREISVVVAAETRKRPEEMRQRTRVR 132 HSP 2 Score: 89.7373 bits (221), Expect = 1.630e-16 Identity = 40/44 (90.91%), Postives = 44/44 (100.00%), Query Frame = 1 Query: 49 REQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYTG 180 +EQN+GSLLVRNIPLDCRPEELR+PFER+GLVRDVYIPKDYYTG Sbjct: 34 KEQNSGSLLVRNIPLDCRPEELRVPFERYGLVRDVYIPKDYYTG 77
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Match: A0A067L915_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01451 PE=4 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.406e-18 Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 1 Query: 1528 PRGFAFVQFVDSYDAAEAQWRMNGKIFGGREISVVVAAESRKRPEEMRHKARQR 1689 PRGFAFVQFVD YDA EAQ RMNG+IF GREI+VVVAAE+RKRPEEMRH+AR R Sbjct: 88 PRGFAFVQFVDPYDAMEAQHRMNGQIFAGREITVVVAAETRKRPEEMRHRARVR 141 HSP 2 Score: 89.7373 bits (221), Expect = 2.845e-16 Identity = 46/72 (63.89%), Postives = 52/72 (72.22%), Query Frame = 1 Query: 49 REQNNGSLLVRNIPLDCRPEELRIPFERFGLVRDVYIPKDYYT----GFVF---------HSSLHCSNGSLF 225 +EQN+GSLLVRNIPLDCRPEELR+PFERFG+VRDVYIPKDYYT GF F + H NG +F Sbjct: 43 KEQNHGSLLVRNIPLDCRPEELRVPFERFGVVRDVYIPKDYYTGEPRGFAFVQFVDPYDAMEAQHRMNGQIF 114 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 4
BLAST of g.barbadense_cottongen_reftransV1_0097856 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097856 ID=g.barbadense_cottongen_reftransV1_0097856; Name=g.barbadense_cottongen_reftransV1_0097856; organism=Gossypium barbadense; type=contig; length=2097bpback to top |