g.barbadense_cottongen_reftransV1_0097429, g.barbadense_cottongen_reftransV1_0097429 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097429 vs. ExPASy TrEMBL
Match: A0A0D2W6D8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G171700 PE=4 SV=1) HSP 1 Score: 332.413 bits (851), Expect = 7.792e-106 Identity = 187/190 (98.42%), Postives = 187/190 (98.42%), Query Frame = 1 Query: 1123 NKTRKAWVERMLQVEPKDRGLSLTTINXXXXXXXXXXXXXXXXXXXXXXXXXDSSHQKLFKNSLIYGNTSSYINSVKYITLLICFLVAFGSFLQCVRSFVHACFLISMPNAVIPMSYAQKAVIRGSACWSIGLRAIYYATVLLLWIFGPIPMFAGSLIMVLVLHLLDTNVTPLHQFEEDNKSCNVVTETN 1692 N RKAWVERMLQVE KDRGLSLTTINSTISASTFLATTSLALSSLIGTLLADSSHQKLFKNSLIYGNTSSYINSVKYITLLICFLVAFGSFLQCVRSFVHACFLISMPNAVIPMSYAQKAVIRGSACWSIGLRAIYYATVLLLWIFGPIPMFAGSLIMVLVLHLLDTNVTPLHQFEEDNKSCNVVTETN Sbjct: 44 NHFRKAWVERMLQVEAKDRGLSLTTINSTISASTFLATTSLALSSLIGTLLADSSHQKLFKNSLIYGNTSSYINSVKYITLLICFLVAFGSFLQCVRSFVHACFLISMPNAVIPMSYAQKAVIRGSACWSIGLRAIYYATVLLLWIFGPIPMFAGSLIMVLVLHLLDTNVTPLHQFEEDNKSCNVVTETN 233
BLAST of g.barbadense_cottongen_reftransV1_0097429 vs. ExPASy TrEMBL
Match: A0A061F8V7_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_031653 PE=4 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 2.059e-71 Identity = 146/191 (76.44%), Postives = 162/191 (84.82%), Query Frame = 1 Query: 1123 NKTRKAWVERMLQVEPKDRGLSLTTINXXXXXXXXXXXXXXXXXXXXXXXXXDSSHQKLFKNSLIYGNTSSYINSVKYITLLICFLVAFGSFLQCVRSFVHACFLISMPNAVIPMSYAQKAVIRGSACWSIGLRAIYYATVLLLWIFGPIPMFAGSLIMVLVLHLLDTNVTPLHQFEEDN-KSCNVVTETN 1692 N +KAWVERMLQVE KDRGL+LTTINSTISA+TFLAT SLALSSLIGT +A+SSH LF+NSLIYGNTSS I SVKYI+LL+CFLVAFGSFLQCV +F HA FLISMPNA I +SY QKAVIRGSACWS+GLRAIY+AT LLLWIFGPIPMFA S+IMV+ LH LD NVTPLH FE S N+ T+ N Sbjct: 44 NHCKKAWVERMLQVEAKDRGLALTTINSTISAATFLATISLALSSLIGTWVAESSHS-LFRNSLIYGNTSSSIISVKYISLLMCFLVAFGSFLQCVGNFAHASFLISMPNADIRVSYIQKAVIRGSACWSVGLRAIYFATTLLLWIFGPIPMFAASVIMVVSLHNLDRNVTPLHNFESAKANSHNLFTKIN 233
BLAST of g.barbadense_cottongen_reftransV1_0097429 vs. ExPASy TrEMBL
Match: A0A061FF84_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031654 PE=4 SV=1) HSP 1 Score: 234.958 bits (598), Expect = 1.487e-68 Identity = 142/191 (74.35%), Postives = 159/191 (83.25%), Query Frame = 1 Query: 1123 NKTRKAWVERMLQVEPKDRGLSLTTINXXXXXXXXXXXXXXXXXXXXXXXXXDSSHQKLFKNSLIYGNTSSYINSVKYITLLICFLVAFGSFLQCVRSFVHACFLISMPNAVIPMSYAQKAVIRGSACWSIGLRAIYYATVLLLWIFGPIPMFAGSLIMVLVLHLLDTNVTPLHQFEE-DNKSCNVVTETN 1692 N +KAWVERMLQVE KDRGL+LT INSTISA+TFLAT SL LSSLIGT LA+SS LF+NSLIYGNTSS I SVKYI+LL CFLVAFGSFLQCV +F HA FLISMPNA IP+ QKAVIRGSACWS+GLRAIY+AT LLLWIFGPIPMFA S+IMV+ LH LD NV+PLH+FE + S N+ T+ N Sbjct: 44 NHCKKAWVERMLQVEAKDRGLALTAINSTISAATFLATISLTLSSLIGTWLAESS-SSLFRNSLIYGNTSSSIISVKYISLLFCFLVAFGSFLQCVGNFAHASFLISMPNADIPVGCIQKAVIRGSACWSVGLRAIYFATTLLLWIFGPIPMFAASVIMVVSLHNLDRNVSPLHKFESAKSNSHNLFTKIN 233
BLAST of g.barbadense_cottongen_reftransV1_0097429 vs. ExPASy TrEMBL
Match: B9SB96_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0649720 PE=4 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 9.686e-62 Identity = 128/181 (70.72%), Postives = 152/181 (83.98%), Query Frame = 1 Query: 1123 NKTRKAWVERMLQVEPKDRGLSLTTINXXXXXXXXXXXXXXXXXXXXXXXXXDSSHQKLFKNSLIYGNTSSYINSVKYITLLICFLVAFGSFLQCVRSFVHACFLISMPNAVIPMSYAQKAVIRGSACWSIGLRAIYYATVLLLWIFGPIPMFAGSLIMVLVLHLLDTNVTPLHQFEEDNK 1665 N R+AWVER+LQVE K+RGL L INSTI+ASTFLA+TSLALSS+IGT + SSH +F++S+IYGNTSS + S+KYI+LLICFLVAF SFLQCVRS VHA FLISMPN+ IP+SY QKAVIRGS WS+GLRAIY+AT LLLWIFGPIPM SL+MV+ L+ LD+N TPLHQFE ++ Sbjct: 44 NHCRRAWVERVLQVEAKERGLYLAVINSTITASTFLASTSLALSSIIGTWVGSSSH-NIFQSSIIYGNTSSSMVSIKYISLLICFLVAFASFLQCVRSLVHANFLISMPNSNIPVSYVQKAVIRGSVFWSVGLRAIYFATNLLLWIFGPIPMLVASLVMVVSLNTLDSNSTPLHQFESASE 223
BLAST of g.barbadense_cottongen_reftransV1_0097429 vs. ExPASy TrEMBL
Match: M5WXZ5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023086mg PE=4 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 1.022e-56 Identity = 121/194 (62.37%), Postives = 152/194 (78.35%), Query Frame = 1 Query: 1123 NKTRKAWVERMLQVEPKDRGLSLTTINXXXXXXXXXXXXXXXXXXXXXXXXXDSSHQKLFKNSLIYGNTSSYINSVKYITLLICFLVAFGSFLQCVRSFVHACFLISMPNAVIPMSYAQKAVIRGSACWSIGLRAIYYATVLLLWIFGPIPMFAGSLIMVLVLHLLDTNVTPLHQFEEDNKSCNVVTETN*EVS 1704 N RKAWVERMLQVE KDRGLS+T I+ TI+A+ FLA+TSLALSSLIG + SSH +F +S+ YG+TS I S+KYI++L CFL+A SFL C+R+FVHA FLISMP++ IP+++ +KAVI G W++GLRAIY+AT LLLWIFGPIPMF S+IMVL+LH LD+N TPLHQF+ KS NV+ + E S Sbjct: 44 NHCRKAWVERMLQVEAKDRGLSVTVISCTITAANFLASTSLALSSLIGAWIGSSSHN-IFMSSITYGDTSPAIISIKYISILACFLLALASFLHCIRNFVHANFLISMPDSDIPLAHVEKAVISGGLFWTLGLRAIYFATTLLLWIFGPIPMFVCSVIMVLILHRLDSNSTPLHQFQP-AKSHNVLRKIGEENS 235
BLAST of g.barbadense_cottongen_reftransV1_0097429 vs. ExPASy TrEMBL
Match: U7DXI1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0500s00200g PE=4 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 1.290e-56 Identity = 122/177 (68.93%), Postives = 143/177 (80.79%), Query Frame = 1 Query: 1123 NKTRKAWVERMLQVEPKDRGLSLTTINXXXXXXXXXXXXXXXXXXXXXXXXXDSSHQKLFKNSLIYGNTSSYINSVKYITLLICFLVAFGSFLQCVRSFVHACFLISMPNAVIPMSYAQKAVIRGSACWSIGLRAIYYATVLLLWIFGPIPMFAGSLIMVLVLHLLDTNVTPLHQFE 1653 N RKAWVER+LQVE K+RGL LT I STI+ASTFLA+TSLALSSL L+ SSH F NS++YG+TSS + +VKYI LLICFLVA SFLQC RS V+A FLISMPN+ IP+SY QKAVIRGS WSIGLRAIY+AT LL+WIFGPIPMF SL++V +L++ DTN TP HQF+ Sbjct: 44 NHYRKAWVERVLQVEGKERGLYLTVIASTITASTFLASTSLALSSLNRALVVSSSHTS-FINSVVYGDTSSSVITVKYIFLLICFLVALLSFLQCARSLVYANFLISMPNSDIPVSYVQKAVIRGSTFWSIGLRAIYFATNLLMWIFGPIPMFVTSLVLVAILNISDTNSTPFHQFK 219
BLAST of g.barbadense_cottongen_reftransV1_0097429 vs. ExPASy TrEMBL
Match: A0A059BVM5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03291 PE=4 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 8.498e-54 Identity = 117/177 (66.10%), Postives = 141/177 (79.66%), Query Frame = 1 Query: 1123 NKTRKAWVERMLQVEPKDRGLSLTTINXXXXXXXXXXXXXXXXXXXXXXXXXDSSHQKLFKNSLIYGNTSSYINSVKYITLLICFLVAFGSFLQCVRSFVHACFLISMPNAVIPMSYAQKAVIRGSACWSIGLRAIYYATVLLLWIFGPIPMFAGSLIMVLVLHLLDTNVTPLHQFE 1653 N RK WVERMLQ+E K+RG+SLT I++TISA+TFLA+TSLALSS IG + SS +F + IYG+TS + SVKYI+LL CFLVAF SFLQC+RS HA FL+SMPN+ IP++Y QKAVIRGS WS+GLRAIY+AT LLLWIFGPIPMF S+ V++LH LDTN TPLH F+ Sbjct: 44 NHCRKVWVERMLQIEAKERGMSLTVISTTISAATFLASTSLALSSFIGAWI-GSSLNSVFTANFIYGDTSPSMISVKYISLLSCFLVAFESFLQCMRSSAHAIFLMSMPNSDIPVAYVQKAVIRGSIFWSVGLRAIYFATNLLLWIFGPIPMFVCSVTTVVILHNLDTNSTPLHHFQ 219
BLAST of g.barbadense_cottongen_reftransV1_0097429 vs. ExPASy TrEMBL
Match: B9GGE0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s38190g PE=4 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 7.735e-52 Identity = 116/160 (72.50%), Postives = 132/160 (82.50%), Query Frame = 1 Query: 1123 NKTRKAWVERMLQVEPKDRGLSLTTINXXXXXXXXXXXXXXXXXXXXXXXXXDSSHQKLFKNSLIYGNTSSYINSVKYITLLICFLVAFGSFLQCVRSFVHACFLISMPNAVIPMSYAQKAVIRGSACWSIGLRAIYYATVLLLWIFGPIPMFAGSLIMV 1602 N RKAWVER+LQVE KDRGL LT I STI+ASTFLA+TSLA SSLIG + SSH +F +S++YG+TSS + +VKYI LLICFLVAF SFLQC RS VHA FLISMPN+ IP+SY QKAVIRGS WSIGLRAIY+AT LL+WIFGPIPMF SL+MV Sbjct: 44 NHYRKAWVERVLQVEGKDRGLYLTVITSTITASTFLASTSLAPSSLIGAWVGSSSHN-IFISSVVYGDTSSSVITVKYIFLLICFLVAFASFLQCARSLVHANFLISMPNSDIPVSYVQKAVIRGSTFWSIGLRAIYFATNLLMWIFGPIPMFVTSLVMV 202
BLAST of g.barbadense_cottongen_reftransV1_0097429 vs. ExPASy TrEMBL
Match: F6H1Z8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g01920 PE=4 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 4.012e-51 Identity = 105/195 (53.85%), Postives = 140/195 (71.79%), Query Frame = 1 Query: 1123 NKTRKAWVERMLQVEPKDRGLSLTTINXXXXXXXXXXXXXXXXXXXXXXXXXDSSHQKLFKNSLIYGNTSSYINSVKYITLLICFLVAFGSFLQCVRSFVHACFLISMPNAVIPMSYAQKAVIRGSACWSIGLRAIYYATVLLLWIFGPIPMFAGSLIMVLVLHLLDTNVTPLHQFEEDNKSCNVVTETN*EVSC 1707 N ++ W+ERMLQVEPKDRG +++ I S +SA+T +++ SL LSSLIG + SS Q +FK+ IYG+TSS S+KYI+LL CFL+AF F+Q R FV F ISMPN+ IP+ Y QKA++ G WS+GLRA+Y A LLLWIFGPIPMF S+I+V+++H LDTN PLHQF+ NK N++ + E+S Sbjct: 44 NHIKRTWIERMLQVEPKDRGQAISVIGSNMSAATSMSSISLTLSSLIGAWVGSSS-QNIFKSGFIYGDTSSSTISIKYISLLACFLLAFACFVQSARYFVQVNFFISMPNSEIPVKYVQKAMLSGGVFWSVGLRALYLAVTLLLWIFGPIPMFVSSVILVVIMHNLDTNSNPLHQFQPANKH-NLLKKIGEEISA 236
BLAST of g.barbadense_cottongen_reftransV1_0097429 vs. ExPASy TrEMBL
Match: A5C8C1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010923 PE=4 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 4.303e-51 Identity = 105/195 (53.85%), Postives = 140/195 (71.79%), Query Frame = 1 Query: 1123 NKTRKAWVERMLQVEPKDRGLSLTTINXXXXXXXXXXXXXXXXXXXXXXXXXDSSHQKLFKNSLIYGNTSSYINSVKYITLLICFLVAFGSFLQCVRSFVHACFLISMPNAVIPMSYAQKAVIRGSACWSIGLRAIYYATVLLLWIFGPIPMFAGSLIMVLVLHLLDTNVTPLHQFEEDNKSCNVVTETN*EVSC 1707 N ++ W+ERMLQVEPKDRG +++ I S +SA+T +++ SL LSSLIG + SS Q +FK+ IYG+TSS S+KYI+LL CFL+AF F+Q R FV F ISMPN+ IP+ Y QKA++ G WS+GLRA+Y A LLLWIFGPIPMF S+I+V+++H LDTN PLHQF+ NK N++ + E+S Sbjct: 44 NHIKRTWIERMLQVEPKDRGQAISVIGSNMSAATSMSSISLTLSSLIGAWVGSSS-QNIFKSGFIYGDTSSSTISIKYISLLACFLLAFACFVQSARYFVQVNFFISMPNSEIPVKYVQKAMLSGGVFWSVGLRALYLAVTLLLWIFGPIPMFVSSVILVVIMHNLDTNSNPLHQFQPANKH-NLLKKIGEEISA 236 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097429 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0097429 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097429 ID=g.barbadense_cottongen_reftransV1_0097429; Name=g.barbadense_cottongen_reftransV1_0097429; organism=Gossypium barbadense; type=contig; length=1947bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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