g.barbadense_cottongen_reftransV1_0097168, g.barbadense_cottongen_reftransV1_0097168 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097168
Unique Name	g.barbadense_cottongen_reftransV1_0097168
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2211

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Match: YMB8_YEAST (Uncharacterized vacuolar membrane protein YML018C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML018C PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.199e-20
Identity = 54/137 (39.42%), Postives = 84/137 (61.31%), Query Frame = -3

Query:  326 WSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDK 736
            + +Y+ LLK+  G E  +V+M+ FFG+VGLF LL LW  +  L+  G EP F+ P    V   + +N  + + +SD+ WA +++ T+PL  T+G+S+TIPLAM  D+I   +  SA+Y+FG   +   F I N S +
Sbjct:  237 YGVYSTLLKREVGDE-TRVNMKIFFGFVGLFNLLFLWPSLIVLDFFGWEP-FSLPKDPKVVVIIFVNCLI-TFVSDFCWAKAMLLTSPLTVTVGLSITIPLAMFGDVIFKHKTMSALYLFGATLILGSFFIINKSSE 370

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Match: THI74_YEAST (Thiamine-repressible mitochondrial transport protein THI74 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=THI74 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.532e-19
Identity = 52/133 (39.10%), Postives = 79/133 (59.40%), Query Frame = -3

Query:  338 WSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIAN 736
            +S+Y  LLK    S+G ++D+Q F GYVG+FT L  W ++  L++  +E  F  P +  +   V+LN  +  V SDYFW  +++ T+PLV T+ ++ TIPLAM AD +     F+  YI G I +F  F + N
Sbjct:  218 YSVYTTLLKYEISSKGLRLDIQMFLGYVGIFTFLLFWPILIILDITHMET-FELPSNFHISFLVMLNCIIIFV-SDYFWCKALILTSPLVVTVALTFTIPLAMFADFVWREAFFTPWYIIGVIFIFVSFFLVN 348

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Match: S35F5_BOVIN (Solute carrier family 35 member F5 OS=Bos taurus GN=SLC35F5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.647e-18
Identity = 53/134 (39.55%), Postives = 83/134 (61.94%), Query Frame = -3

Query:  335 WSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANV 736
            +++Y V++K+    E +K+D+  FFG+VGLF LL LW   + L+  G E  F FP+   V   +++NG +G+VLS++ W      T+ L+ TL +SLTIPL+++ADM +    FS ++  G I VF  F IA +
Sbjct:  341 YAVYIVMIKRKVDRE-DKLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFED-FEFPNKV-VLMCIVINGLIGTVLSEFLWLWGCFLTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIATL 471

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Match: S35F5_MACFA (Solute carrier family 35 member F5 OS=Macaca fascicularis GN=SLC35F5 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.591e-18
Identity = 52/134 (38.81%), Postives = 82/134 (61.19%), Query Frame = -3

Query:  335 WSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANV 736
            +++Y V++K+    E +K+D+  FFG+VGLF LL LW   + L+  G E  F FP+   V   +++NG +G+VLS++ W      T+ L+ TL +SLTIPL+++ADM +    FS ++  G I VF  F I  +
Sbjct:  249 YAVYIVMIKRKVDRE-DKLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFED-FEFPNKV-VLMCIIINGLIGTVLSEFLWLWGCFLTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTL 379

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Match: S35F5_PONAB (Solute carrier family 35 member F5 OS=Pongo abelii GN=SLC35F5 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.062e-17
Identity = 52/134 (38.81%), Postives = 82/134 (61.19%), Query Frame = -3

Query:  335 WSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANV 736
            +++Y V++K+    E +K+D+  FFG+VGLF LL LW   + L+  G E  F FP+   V   +++NG +G+VLS++ W      T+ L+ TL +SLTIPL+++ADM +    FS ++  G I VF  F I  +
Sbjct:  340 YAVYIVMIKRKVDRE-DKLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFED-FEFPNKV-VLMCIIINGLIGTVLSEFLWLWGCFLTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTL 470

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Match: S35F5_HUMAN (Solute carrier family 35 member F5 OS=Homo sapiens GN=SLC35F5 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.091e-17
Identity = 52/134 (38.81%), Postives = 82/134 (61.19%), Query Frame = -3

Query:  335 WSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANV 736
            +++Y V++K+    E +K+D+  FFG+VGLF LL LW   + L+  G E  F FP+   V   +++NG +G+VLS++ W      T+ L+ TL +SLTIPL+++ADM +    FS ++  G I VF  F I  +
Sbjct:  340 YAVYIVMIKRKVDRE-DKLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFED-FEFPNKV-VLMCIIINGLIGTVLSEFLWLWGCFLTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTL 470

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Match: S35F5_MOUSE (Solute carrier family 35 member F5 OS=Mus musculus GN=Slc35f5 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.556e-17
Identity = 52/134 (38.81%), Postives = 82/134 (61.19%), Query Frame = -3

Query:  335 WSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANV 736
            +++Y V++K+    E +K+D+  FFG+VGLF LL LW   + L+  G E  F FP+   V   +++NG +G+VLS++ W      T+ L+ TL +SLTIPL+++ADM +    FS ++  G I VF  F I  +
Sbjct:  341 YAVYIVMIKRKVDRE-DKLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFED-FEFPNKV-VLLCIIINGLIGTVLSEFLWLWGCFLTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTL 471

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Match: YGF3_SCHPO (Uncharacterized transporter C405.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC405.03c PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.501e-16
Identity = 50/134 (37.31%), Postives = 84/134 (62.69%), Query Frame = -3

Query:  326 YAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDK 727
            Y+V++K    +E   V  + FFG VGLF L+ LW  +  L++ G+E  F+ P S + G  VL+     + +SDY W ++++ T+PL+ T+GMSL+IPLA+  D+++ G + +   I G + VFAGF++ N + +
Sbjct:  208 YSVMVKFHI-TEESCVSTRLFFGLVGLFDLILLWPFLIILHLYGVER-FSLP-STTAGLIVLIINASITFVSDYLWVIAMLMTSPLLVTVGMSLSIPLALFFDILLKGHYLNFSLILGSLLVFAGFIVVNYNQQ 338

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: A0A0D2QA93_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G064500 PE=4 SV=1)

HSP 1 Score: 446.432 bits (1147), Expect = 6.682e-149
Identity = 242/244 (99.18%), Postives = 243/244 (99.59%), Query Frame = -1

Query: 1084 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSECVGSFFASYFNNLLTFPYS 1815
            MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKD PDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANTSVASTTVLTSTSGLFTLFFGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSECVGS+FASYFNNLLTFPYS
Sbjct:    1 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDVPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANTSVASTTVLTSTSGLFTLFFGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSECVGSYFASYFNNLLTFPYS 244

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: A0A0D2TER0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G064500 PE=4 SV=1)

HSP 1 Score: 408.297 bits (1048), Expect = 5.329e-132
Identity = 224/226 (99.12%), Postives = 224/226 (99.12%), Query Frame = -1

Query: 1138 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSEC 1815
            MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKD PDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANTSVASTTVLTSTSGLFTLFFGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSE 
Sbjct:    1 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDVPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANTSVASTTVLTSTSGLFTLFFGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSEA 226

HSP 2 Score: 287.345 bits (734), Expect = 1.069e-85
Identity = 153/202 (75.74%), Postives = 155/202 (76.73%), Query Frame = -3

Query:  305 LSRARRHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL 910
            +S A+RHSIMGNIFGLLSAISYGLFT                                     VLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWL         EPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL
Sbjct:  223 VSEAKRHSIMGNIFGLLSAISYGLFT-------------------------------------VLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWL---------EPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL 378

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: A0A0D2UH99_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G064500 PE=4 SV=1)

HSP 1 Score: 407.142 bits (1045), Expect = 8.993e-132
Identity = 224/226 (99.12%), Postives = 224/226 (99.12%), Query Frame = -1

Query: 1138 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSEC 1815
            MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKD PDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANTSVASTTVLTSTSGLFTLFFGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSE 
Sbjct:    1 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDVPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANTSVASTTVLTSTSGLFTLFFGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSEA 226

HSP 2 Score: 273.863 bits (699), Expect = 1.100e-80
Identity = 143/183 (78.14%), Postives = 145/183 (79.23%), Query Frame = -3

Query:  362 LSRARRHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQV 910
            +S A+RHSIMGNIFGLLSAISYGLFT                                     VLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQV
Sbjct:  223 VSEAKRHSIMGNIFGLLSAISYGLFT-------------------------------------VLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQV 368

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: A0A0D2TKL9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G064500 PE=4 SV=1)

HSP 1 Score: 407.142 bits (1045), Expect = 1.756e-131
Identity = 224/226 (99.12%), Postives = 224/226 (99.12%), Query Frame = -1

Query: 1138 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSEC 1815
            MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKD PDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANTSVASTTVLTSTSGLFTLFFGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSE 
Sbjct:    1 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDVPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANTSVASTTVLTSTSGLFTLFFGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSEA 226

HSP 2 Score: 312.383 bits (799), Expect = 4.282e-95
Identity = 162/202 (80.20%), Postives = 164/202 (81.19%), Query Frame = -3

Query:  305 LSRARRHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL 910
            +S A+RHSIMGNIFGLLSAISYGLFT                                     VLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL
Sbjct:  223 VSEAKRHSIMGNIFGLLSAISYGLFT-------------------------------------VLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL 387

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: A0A0D2RV65_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G064500 PE=4 SV=1)

HSP 1 Score: 405.216 bits (1040), Expect = 2.073e-131
Identity = 224/226 (99.12%), Postives = 224/226 (99.12%), Query Frame = -1

Query: 1138 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSEC 1815
            MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKD PDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANTSVASTTVLTSTSGLFTLFFGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSE 
Sbjct:    1 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDVPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANTSVASTTVLTSTSGLFTLFFGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSEA 226

HSP 2 Score: 182.57 bits (462), Expect = 6.553e-48
Identity = 97/137 (70.80%), Postives = 99/137 (72.26%), Query Frame = -3

Query:  500 LSRARRHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFW 910
            +S A+RHSIMGNIFGLLSAISYGLFT                                     VLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFW
Sbjct:  223 VSEAKRHSIMGNIFGLLSAISYGLFT-------------------------------------VLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFW 322

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: A0A0D2TKM2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G064500 PE=4 SV=1)

HSP 1 Score: 396.356 bits (1017), Expect = 2.389e-127
Identity = 221/226 (97.79%), Postives = 221/226 (97.79%), Query Frame = -1

Query: 1138 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSEC 1815
            MGLKYNAGLGLIATVVFIWVVSAE   RIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKD PDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANTSVASTTVLTSTSGLFTLFFGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSE 
Sbjct:    1 MGLKYNAGLGLIATVVFIWVVSAE---RIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDVPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANTSVASTTVLTSTSGLFTLFFGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSEA 223

HSP 2 Score: 312.383 bits (799), Expect = 4.526e-95
Identity = 162/202 (80.20%), Postives = 164/202 (81.19%), Query Frame = -3

Query:  305 LSRARRHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL 910
            +S A+RHSIMGNIFGLLSAISYGLFT                                     VLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL
Sbjct:  220 VSEAKRHSIMGNIFGLLSAISYGLFT-------------------------------------VLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL 384

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: A0A0D2RV68_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G064500 PE=4 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 1.391e-112
Identity = 198/200 (99.00%), Postives = 198/200 (99.00%), Query Frame = -1

Query: 1138 QRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSEC 1737
            QRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKD PDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANTSVASTTVLTSTSGLFTLFFGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSE 
Sbjct:    5 QRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDVPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANTSVASTTVLTSTSGLFTLFFGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSEA 204

HSP 2 Score: 312.768 bits (800), Expect = 1.734e-95
Identity = 162/202 (80.20%), Postives = 164/202 (81.19%), Query Frame = -3

Query:  305 LSRARRHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL 910
            +S A+RHSIMGNIFGLLSAISYGLFT                                     VLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL
Sbjct:  201 VSEAKRHSIMGNIFGLLSAISYGLFT-------------------------------------VLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL 365

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: A0A061GQ89_THECC (EamA-like transporter family isoform 1 OS=Theobroma cacao GN=TCM_036876 PE=4 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 3.044e-110
Identity = 195/231 (84.42%), Postives = 210/231 (90.91%), Query Frame = -1

Query: 1141 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIG------LNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSE 1815
            MG +YNAGLGLI TVVFIWV SAE+TQRIF+EYKQPFALTYLGVSLMVVY+PIA+LKDWI NLF+ANL+RNLY+GSSVI TSIG      +N+LP SAEADL+ CLITDKDLSEREEGQPLNSS EKD P LP+HGGG SSWE AKCSLYLTPIWF TEYLSNSALANTSVASTTVLTSTSGLFTLFFGALL QD++NVAKVVAVFISM GVAMTT+GKTWASDEMLSVSE
Sbjct:    1 MGWRYNAGLGLIGTVVFIWVASAEITQRIFAEYKQPFALTYLGVSLMVVYIPIAVLKDWIWNLFDANLFRNLYEGSSVISTSIGPDISLKINDLPHSAEADLRSCLITDKDLSEREEGQPLNSSNEKDEPQLPEHGGGLSSWEIAKCSLYLTPIWFITEYLSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDTINVAKVVAVFISMAGVAMTTVGKTWASDEMLSVSE 231

HSP 2 Score: 285.419 bits (729), Expect = 9.793e-85
Identity = 145/202 (71.78%), Postives = 156/202 (77.23%), Query Frame = -3

Query:  305 LSRARRHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL 910
            +S  RRH I G+IFGLLSAISYGLFT                                     VLLKKSAGSEGEKVD+QKFFGY+GLFTLLGLWWLVWPLN VGIEPPF+FPHSASVGE VL NG VGSVLSDYFWALSVVWTTPLVATLGMSLTIP+AM+ADM+IHGRHFSAVYIFGCIQVFAGFV+AN+SDKFS KP+L
Sbjct:  229 VSETRRHCITGDIFGLLSAISYGLFT-------------------------------------VLLKKSAGSEGEKVDVQKFFGYIGLFTLLGLWWLVWPLNAVGIEPPFSFPHSASVGEVVLFNGIVGSVLSDYFWALSVVWTTPLVATLGMSLTIPIAMLADMVIHGRHFSAVYIFGCIQVFAGFVLANISDKFSGKPEL 393

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: A0A061GHG6_THECC (EamA-like transporter family isoform 2 OS=Theobroma cacao GN=TCM_036876 PE=4 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 2.261e-97
Identity = 161/231 (69.70%), Postives = 176/231 (76.19%), Query Frame = -1

Query: 1141 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIG------LNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSE 1815
            MG +YNAGLGLI TVVFIWV SAE+TQRIF+EYKQPFALTYLGVSLMVVY+PIA+LKDWI NLF+ANL+RNLY+GSSVI TSIG      +N+LP SAEADL+ CLITDKDLSEREEGQPLNSS EKD P LP+HGGG SSWE AKCSLYLTPIWF TE                                   D++NVAKVVAVFISM GVAMTT+GKTWASDEMLSVSE
Sbjct:    1 MGWRYNAGLGLIGTVVFIWVASAEITQRIFAEYKQPFALTYLGVSLMVVYIPIAVLKDWIWNLFDANLFRNLYEGSSVISTSIGPDISLKINDLPHSAEADLRSCLITDKDLSEREEGQPLNSSNEKDEPQLPEHGGGLSSWEIAKCSLYLTPIWFITE-----------------------------------DTINVAKVVAVFISMAGVAMTTVGKTWASDEMLSVSE 196

HSP 2 Score: 283.878 bits (725), Expect = 1.195e-84
Identity = 145/202 (71.78%), Postives = 156/202 (77.23%), Query Frame = -3

Query:  305 LSRARRHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL 910
            +S  RRH I G+IFGLLSAISYGLFT                                     VLLKKSAGSEGEKVD+QKFFGY+GLFTLLGLWWLVWPLN VGIEPPF+FPHSASVGE VL NG VGSVLSDYFWALSVVWTTPLVATLGMSLTIP+AM+ADM+IHGRHFSAVYIFGCIQVFAGFV+AN+SDKFS KP+L
Sbjct:  194 VSETRRHCITGDIFGLLSAISYGLFT-------------------------------------VLLKKSAGSEGEKVDVQKFFGYIGLFTLLGLWWLVWPLNAVGIEPPFSFPHSASVGEVVLFNGIVGSVLSDYFWALSVVWTTPLVATLGMSLTIPIAMLADMVIHGRHFSAVYIFGCIQVFAGFVLANISDKFSGKPEL 358

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: A0A067FVC7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015504mg PE=4 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 3.106e-82
Identity = 139/206 (67.48%), Postives = 157/206 (76.21%), Query Frame = -3

Query:  290 SRARRHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL*QVVL 907
            S +RRH+I G+IFGLLSAI+YGLFT                                     VLLKKSAGSEG+KVD+QKFFGY+GLFT LGLWWL+WPLN  GIEPPF FPHS SVGE +LLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLT+PLAMVADM+IHGRH+SA+YIFGC+QVFAGF+IAN+SDKFS K +L Q+ L
Sbjct:  230 SESRRHNITGDIFGLLSAITYGLFT-------------------------------------VLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDKFSAKIELLQMKL 398

HSP 2 Score: 266.929 bits (681), Expect = 1.154e-77
Identity = 154/231 (66.67%), Postives = 181/231 (78.35%), Query Frame = -1

Query: 1141 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGL------NELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSE 1815
            MG KY AGLGLI   V IW+ SAE+TQ+IF+EY+QPFALTYLGVSLMV+YLP+ALL+D  C+L + N+++NL+   S+  TS GL      NEL  S E DL+  L+ DKDLSEREEG PL + ++KD P + +     SSW  AKCSLYLTPIWF TEY SNSALANTSVASTTVLTSTSGLFTLFFGALL QDS+ +AK+VAVFISM GVAMTT+GKTWA+DE LS SE
Sbjct:    1 MGWKYQAGLGLIGAFVLIWITSAEITQKIFTEYRQPFALTYLGVSLMVIYLPVALLRDCFCSLLDKNIFKNLFGNRSLTSTSTGLDIPLKSNELNNSLETDLRSSLMMDKDLSEREEGWPLIAKSDKDEPHVLEQRSELSSWAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSITIAKLVAVFISMAGVAMTTVGKTWAADEFLSASE 231

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 8


Match Name	E-value	Identity	Description
YMB8_YEAST	3.199e-20	39.42	Uncharacterized vacuolar membrane protein YML018C ...	[more]
THI74_YEAST	1.532e-19	39.10	Thiamine-repressible mitochondrial transport prote...	[more]
S35F5_BOVIN	3.647e-18	39.55	Solute carrier family 35 member F5 OS=Bos taurus G...	[more]
S35F5_MACFA	6.591e-18	38.81	Solute carrier family 35 member F5 OS=Macaca fasci...	[more]
S35F5_PONAB	1.062e-17	38.81	Solute carrier family 35 member F5 OS=Pongo abelii...	[more]
S35F5_HUMAN	1.091e-17	38.81	Solute carrier family 35 member F5 OS=Homo sapiens...	[more]
S35F5_MOUSE	1.556e-17	38.81	Solute carrier family 35 member F5 OS=Mus musculus...	[more]
YGF3_SCHPO	2.501e-16	37.31	Uncharacterized transporter C405.03c OS=Schizosacc...	[more]

BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2QA93_GOSRA	6.682e-149	99.18	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2TER0_GOSRA	5.329e-132	99.12	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2UH99_GOSRA	8.993e-132	99.12	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2TKL9_GOSRA	1.756e-131	99.12	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2RV65_GOSRA	2.073e-131	99.12	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2TKM2_GOSRA	2.389e-127	97.79	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2RV68_GOSRA	1.391e-112	99.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061GQ89_THECC	3.044e-110	84.42	EamA-like transporter family isoform 1 OS=Theobrom...	[more]
A0A061GHG6_THECC	2.261e-97	69.70	EamA-like transporter family isoform 2 OS=Theobrom...	[more]
A0A067FVC7_CITSI	3.106e-82	67.48	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000620	EamA domain	PFAM	PF00892	EamA	coord: 159..217 e-value: 3.0E-6 score: 27.3
None	No IPR available	PANTHER	PTHR23051	SOLUTE CARRIER FAMILY 35, MEMBER F5	coord: 1..232
None	No IPR available	PANTHER	PTHR23051:SF2	SUBFAMILY NOT NAMED	coord: 1..232
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 44..63
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 200..219
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 33..43
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..32
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 220..251
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 194..199
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 64..171
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 172..193
None	No IPR available	SUPERFAMILY	103481	Multidrug resistance efflux transporter EmrE	coord: 155..220
None	No IPR available	TMHMM	TMhelix		coord: 44..63
None	No IPR available	TMHMM	TMhelix		coord: 171..193
None	No IPR available	TMHMM	TMhelix		coord: 15..32
None	No IPR available	TMHMM	TMhelix		coord: 200..219

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097168 ID=g.barbadense_cottongen_reftransV1_0097168; Name=g.barbadense_cottongen_reftransV1_0097168; organism=Gossypium barbadense; type=contig; length=2211bp
CGATATGATATGTTTTTTCTTTCAACAAATTCTTTTGTAAGTGGACAAAA
GCCCCAGATTCAACATCCCCGTTTCAAGCGACAAACCATTGTTCATGTAA
TATTTGATTTAACATATAGAAAGCAAAGCTAATATGAATTGACCCTTATT
GTTCATGTTTTGCTCTAATTGTCAAATAACCCCAGGCAACATTACTCGAG
TTAAGGCATCTAATCTCCCACACCCCTACAATTGTTTCATTGTTTTACAT
TTAAAAGATTAAAAACATTTTACGCTCCTCTGAAACTTGCAAAACGACTT
GCTACAACTGCGGTTTTCTCGAAAACTTGTCGGACACGTTAGCTATAACA
AAACCTGCAAACACCTGAATGCACCCAAAGATGTATACTGCGGAGAAGTG
TCGGCCATGTATAATCATGTCAGCTACCATTGCTAGGGGTATTGTCAATG
ACATTCCCAATGTTGCAACTAATGGAGTTGTCCAAACCACGGAAAGAGCC
CAGAAGTAGTCTGAGAGAACGCTTCCTACAAAGCCGTTTAAAAGCACTGC
CTCTCCAACAGATGCTGAATGGGGGAATGCAAATGGAGGTTCTATCCCAA
CAACATTAAGCGGCCACACAAGCCACCAAAGGCCAAGAAGAGTAAAGAGA
CCGACATATCCAAAGAACTTCTGCATATCGACTTTCTCTCCTTCTGATCC
AGCAGATTTCTTGAGCAGAACTGCATAAATTGACCAGTGACTCTGAATAA
AGCAGAAGAGCAGAGAAGCAGTCTCGCCAAATTAAATAGATTAAGTCAGT
ATTCAATTTAGATGCATAGAAAAAAGCCTACCTGTAAATAAACCATATGA
AATTGCAGACAGAAGACCAAATATATTCCCCATGATGGAGTGTCTTCTAG
CTCTAGACAACAAGAACAACACATGGTTCCATAAAAAAGAAAATCATGAA
ACAAAAATGCAAAAACCATTTCCATTGCAGGGATTATACGAAGAGCATCT
TATGCATATTACTACTCGAGCAGCCTAAACAGTCTACAACATGAATTTAT
AAACCTTCCACGGTAGATTCAACGTATTCTTTAGGAATAAGGAAATGTTA
ATAAATTATTGAAATAACTAGCAAAGAAAGACCCAACGCACTCAGAGACA
CTAAGCATTTCATCCGATGCCCATGTCTTTCCAATTGTGGTCATAGCAAC
ACCAGTCATGCTAATAAATACAGCAACCACTTTCGCAACATTTACACTGT
CCTGGCTGAGGAGAGCTCCGAAGAAAAGTGTAAAGAGCCCTGAAGTAGAT
GTTAGGACGGTAGTACTCGCAACACTGGTATTTGCCAGTGCAGAATTTGA
TAAATACTCAGTTGTAAACCAAATTGGAGTCAGGTATAAACTGCACTTGG
CAGTTTCCCATGAACTCGTTCCACCGCCATGGTCAGGCAAGTCAGGTCCA
TCTTTCTCAGTACTTGAGTTGAGAGGCTGCCCCTCTTCTCTTTCACTAAG
ATCCTTGTCAGTTATCAGGCATCTTTTAAGGTCAGCTTCAGCACTTTGGG
GCAACTCATTGAGTCCAATTGAGGTATCGATAACCGAGCTGCCATCGTAG
AGGTTTCTATATAAATTCGCATTAAATAAGTTGCAGATCCAATCCTTTAA
AAGCGCTATGGGTAAATAAACAACCATAAGGGACACTCCAAGATAAGTGA
GTGCAAATGGCTGTTTGTATTCTGAGAAAATCCTCTGTGTTACCTCTGCA
GATACGACCCATATAAACACAACAGTAGCAATCAACCCTAACCCAGCATT
ATACTTCAAACCCATCACCCCCAAAACACCAAACAGTATGGTAGACGCTG
AAACTTTGACTTTTTACAAAAAGAAAGAAGAAACAAGAATTGGCTTTGAA
ATTGCTATAAAACTTTGAGTTCCATGGTAAAAGCTGTGTGGGGATCTTCT
CTGATCTTATTTGTGTGCAATCACGCAACCATATTTAGCTGAAGCAGGGG
GGATGTTTTTAAACCGATTCACAAACAATCGGTGGAACCAATATGTGCGT
TAATGACGAAAGGTATTAAGTCTTTGATTTGAGAATTTTCTCTTTTTTAA
TATTGCCGTTAGTTTGAGGACAAGACTGCGAGAGTGACAAGTGGTTAAAT
GTCAAGGAAAGATGGTTAATATCTGCGACGAACCCCGCTGAAGTGGCGTT
TTAAACTTCGG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000620	EamA_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral to membrane

Search form

g.barbadense_cottongen_reftransV1_0097168, g.barbadense_cottongen_reftransV1_0097168 (contig) Gossypium barbadense

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