g.barbadense_cottongen_reftransV1_0094252, g.barbadense_cottongen_reftransV1_0094252 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0094252
Unique Name	g.barbadense_cottongen_reftransV1_0094252
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	3014

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
At09	chromosome	g.barbadense_cottongen_reftransV1_0094252:1..3014 . At09:72718499..72730664 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094252 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.453e-18
Identity = 74/92 (80.43%), Postives = 85/92 (92.39%), Query Frame = 3

Query: 1245 RAHKKLSSIEAWENSXXXXXXXXXXXXXXXXXXXXXXYVEKMKNKIALIHXXXXXXXXXXXXXRGEDLLKAEEIAAKYRATGTTPNKVLGCF 1520
            +A KK+S+I AWENSKKA LEAELKK+EE+LEK+KAEY EKMKNKIAL+HKEAEEK+AM+EAKRGEDLLKAEE+AAKYRATGT P K+LG F
Sbjct:  107 KAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198

HSP 2 Score: 69.707 bits (169), Expect = 9.037e-12
Identity = 65/167 (38.92%), Postives = 79/167 (47.31%), Query Frame = 3

Query:  594 MAEEEPKKVETVTPSEQPPP-----EAPKDV-AEEKSVI----PPPTSE-EKPAESAALQSIYLFCFFPCLV*Y*DRITXXXXXXXXXXXXXXMEEAAEPTEEKSTESTVDRGNFXXXXXXXXXXXXXRFKCNYYDPDTVLARVATEKRISLIKAWEESERSKAENK 1061
            MAE E KKVE V P+   PP     EAPK+V A+EK+++    PPP  E EKP +S AL  +                                 +A EP +EK  E ++DR                         D VLARVATEKR+SLIKAWEESE+SKAENK
Sbjct:    1 MAELEAKKVEIVDPA---PPAPGPVEAPKEVVADEKAIVAPALPPPAEEKEKPDDSKALVVVET-------------------------------KAPEPADEKK-EGSIDR-------------------------DAVLARVATEKRVSLIKAWEESEKSKAENK 107

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094252 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.993e-14
Identity = 66/93 (70.97%), Postives = 80/93 (86.02%), Query Frame = 3

Query: 1242 GRAHKKLSSIEAWENSXXXXXXXXXXXXXXXXXXXXXXYVEKMKNKIALIHXXXXXXXXXXXXXRGEDLLKAEEIAAKYRATGTTPNKVLGCF 1520
             +A KK++ + AWENSKKAA+EA+LKKIEE+LEK+KAEY E+MKNK+A IHKEAEE++AM+EAKRGED+LKAEE AAKYRATG  P    GCF
Sbjct:  120 NKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094252 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.369e-14
Identity = 67/92 (72.83%), Postives = 79/92 (85.87%), Query Frame = 3

Query: 1245 RAHKKLSSIEAWENSXXXXXXXXXXXXXXXXXXXXXXYVEKMKNKIALIHXXXXXXXXXXXXXRGEDLLKAEEIAAKYRATGTTPNKVLGCF 1520
            RA KK+S + AWENSKKAA+EA+L+KIEEKLEK+KA+Y EKMKNK+A IHK AEEK+AMVEAK+GE+LLKAEE+ AKYRATG  P    GCF
Sbjct:   99 RAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094252 vs. ExPASy TrEMBL
Match: A0A0B0P547_GOSAR (Remorin OS=Gossypium arboreum GN=F383_26417 PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.603e-38
Identity = 93/156 (59.62%), Postives = 94/156 (60.26%), Query Frame = 3

Query:  594 MAEEEPKKVETVTPSEQPPPEAPKDVAEEKSVIPPPTSEEKPAESAALQSIYLFCFFPCLV*Y*DRITXXXXXXXXXXXXXXMEEAAEPTEEKSTESTVDRGNFXXXXXXXXXXXXXRFKCNYYDPDTVLARVATEKRISLIKAWEESERSKAENK 1061
            MAEEEPKKVETVTPSEQPPPEAPKDVAEEKSVIPPP SEEKPAESAALQ                                    AAEPTEEKSTESTVDR                         DTVLARVATEKRISLIKAWEE+ERSKAENK
Sbjct:    1 MAEEEPKKVETVTPSEQPPPEAPKDVAEEKSVIPPPPSEEKPAESAALQK-----------------------------------AAEPTEEKSTESTVDR-------------------------DTVLARVATEKRISLIKAWEETERSKAENK 96

HSP 2 Score: 111.309 bits (277), Expect = 8.375e-24
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 3

Query: 1242 GRAHKKLSSIEAWENSXXXXXXXXXXXXXXXXXXXXXXYVEKMKNKIALIHXXXXXXXXXXXXXRGEDLLKAEEIAAKYRATGTTPNKVLGCF 1520
             +AHKKLSSIEAWENSKKAALEAELKKIEEKLEKQKAEYVEKMKNKIALIHKEAEEKKAMVEAKRGEDLLKAEEIAAKYRATGTTPNKVLGCF
Sbjct:   95 NKAHKKLSSIEAWENSKKAALEAELKKIEEKLEKQKAEYVEKMKNKIALIHKEAEEKKAMVEAKRGEDLLKAEEIAAKYRATGTTPNKVLGCF 187

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094252 vs. ExPASy TrEMBL
Match: A0A0D2QD94_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G197800 PE=4 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 6.284e-38
Identity = 93/156 (59.62%), Postives = 93/156 (59.62%), Query Frame = 3

Query:  594 MAEEEPKKVETVTPSEQPPPEAPKDVAEEKSVIPPPTSEEKPAESAALQSIYLFCFFPCLV*Y*DRITXXXXXXXXXXXXXXMEEAAEPTEEKSTESTVDRGNFXXXXXXXXXXXXXRFKCNYYDPDTVLARVATEKRISLIKAWEESERSKAENK 1061
            MAEEEPKKVETVTPSEQPPPEAPKDVAEEKSVIPPPTSEEKPAESAALQ                                    A EPTEEKSTESTVDR                         D VLARVATEKRISLIKAWEESERSKAENK
Sbjct:    1 MAEEEPKKVETVTPSEQPPPEAPKDVAEEKSVIPPPTSEEKPAESAALQK-----------------------------------AVEPTEEKSTESTVDR-------------------------DAVLARVATEKRISLIKAWEESERSKAENK 96

HSP 2 Score: 111.309 bits (277), Expect = 8.295e-24
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 3

Query: 1242 GRAHKKLSSIEAWENSXXXXXXXXXXXXXXXXXXXXXXYVEKMKNKIALIHXXXXXXXXXXXXXRGEDLLKAEEIAAKYRATGTTPNKVLGCF 1520
             +AHKKLSSIEAWENSKKAALEAELKKIEEKLEKQKAEYVEKMKNKIALIHKEAEEKKAMVEAKRGEDLLKAEEIAAKYRATGTTPNKVLGCF
Sbjct:   95 NKAHKKLSSIEAWENSKKAALEAELKKIEEKLEKQKAEYVEKMKNKIALIHKEAEEKKAMVEAKRGEDLLKAEEIAAKYRATGTTPNKVLGCF 187

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094252 vs. ExPASy TrEMBL
Match: A0A0B0P4P2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_26415 PE=4 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.524e-34
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = -1

Query: 2478 MDSDWAGLSRDLVDLILAKLISVSDYLRFGAVCKTWHSVAMDRINNFCLHNFQCSFSLPMSSNASCP 2678
            MDSDWAGLSRDLVDLILA+L+SVSDYLRFGAVCKTWHSVAMDRINNFCLHNFQCSFSLPMSSNASCP
Sbjct:    1 MDSDWAGLSRDLVDLILARLVSVSDYLRFGAVCKTWHSVAMDRINNFCLHNFQCSFSLPMSSNASCP 67

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094252 vs. ExPASy TrEMBL
Match: A0A0D2QW82_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G118800 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.374e-20
Identity = 83/93 (89.25%), Postives = 88/93 (94.62%), Query Frame = 3

Query: 1242 GRAHKKLSSIEAWENSXXXXXXXXXXXXXXXXXXXXXXYVEKMKNKIALIHXXXXXXXXXXXXXRGEDLLKAEEIAAKYRATGTTPNKVLGCF 1520
             RA KKLSSI AWEN+KKAA+EAELK+IEEKLEKQKAEYVEKMKNK ALIHKEAEEKKA+VEAKRGEDLLKAEE+AAKYRATGTTPNK LGCF
Sbjct:  100 NRAQKKLSSIAAWENTKKAAIEAELKRIEEKLEKQKAEYVEKMKNKAALIHKEAEEKKAIVEAKRGEDLLKAEELAAKYRATGTTPNKTLGCF 192

HSP 2 Score: 61.6178 bits (148), Expect = 2.815e-7
Identity = 39/73 (53.42%), Postives = 44/73 (60.27%), Query Frame = 3

Query:  840 MEEAAEPTEEKSTESTVDRGNFXXXXXXXXXXXXXRFKCNYYDPDTVLARVATEKRISLIKAWEESERSKAEN 1058
            +E+AAE TE+KSTE +VDR                         D VLARVATEKRISLI AWEESE+SKAEN
Sbjct:   52 IEKAAEATEKKSTEVSVDR-------------------------DAVLARVATEKRISLINAWEESEKSKAEN 99

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094252 vs. ExPASy TrEMBL
Match: A0A0D2MX32_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G118800 PE=4 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.684e-19
Identity = 82/93 (88.17%), Postives = 88/93 (94.62%), Query Frame = 3

Query: 1242 GRAHKKLSSIEAWENSXXXXXXXXXXXXXXXXXXXXXXYVEKMKNKIALIHXXXXXXXXXXXXXRGEDLLKAEEIAAKYRATGTTPNKVLGCF 1520
             +A KKLSSI AWEN+KKAA+EAELK+IEEKLEKQKAEYVEKMKNK ALIHKEAEEKKA+VEAKRGEDLLKAEE+AAKYRATGTTPNK LGCF
Sbjct:   99 NKAQKKLSSIAAWENTKKAAIEAELKRIEEKLEKQKAEYVEKMKNKAALIHKEAEEKKAIVEAKRGEDLLKAEELAAKYRATGTTPNKTLGCF 191

HSP 2 Score: 63.1586 bits (152), Expect = 8.981e-8
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 3

Query:  840 MEEAAEPTEEKSTESTVDRGNFXXXXXXXXXXXXXRFKCNYYDPDTVLARVATEKRISLIKAWEESERSKAENK 1061
            +E+AAE TE+KSTE +VDR                         D VLARVATEKRISLI AWEESE+SKAENK
Sbjct:   52 IEKAAEATEKKSTEVSVDR-------------------------DAVLARVATEKRISLINAWEESEKSKAENK 100

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094252 vs. ExPASy TrEMBL
Match: A0A0D2R358_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G118800 PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.784e-19
Identity = 82/93 (88.17%), Postives = 88/93 (94.62%), Query Frame = 3

Query: 1242 GRAHKKLSSIEAWENSXXXXXXXXXXXXXXXXXXXXXXYVEKMKNKIALIHXXXXXXXXXXXXXRGEDLLKAEEIAAKYRATGTTPNKVLGCF 1520
             +A KKLSSI AWEN+KKAA+EAELK+IEEKLEKQKAEYVEKMKNK ALIHKEAEEKKA+VEAKRGEDLLKAEE+AAKYRATGTTPNK LGCF
Sbjct:  102 NKAQKKLSSIAAWENTKKAAIEAELKRIEEKLEKQKAEYVEKMKNKAALIHKEAEEKKAIVEAKRGEDLLKAEELAAKYRATGTTPNKTLGCF 194

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094252 vs. ExPASy TrEMBL
Match: A0A0D2PAJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G118800 PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.410e-19
Identity = 82/93 (88.17%), Postives = 88/93 (94.62%), Query Frame = 3

Query: 1242 GRAHKKLSSIEAWENSXXXXXXXXXXXXXXXXXXXXXXYVEKMKNKIALIHXXXXXXXXXXXXXRGEDLLKAEEIAAKYRATGTTPNKVLGCF 1520
             +A KKLSSI AWEN+KKAA+EAELK+IEEKLEKQKAEYVEKMKNK ALIHKEAEEKKA+VEAKRGEDLLKAEE+AAKYRATGTTPNK LGCF
Sbjct:   96 NKAQKKLSSIAAWENTKKAAIEAELKRIEEKLEKQKAEYVEKMKNKAALIHKEAEEKKAIVEAKRGEDLLKAEELAAKYRATGTTPNKTLGCF 188

HSP 2 Score: 61.2326 bits (147), Expect = 3.350e-7
Identity = 39/71 (54.93%), Postives = 42/71 (59.15%), Query Frame = 3

Query:  849 AAEPTEEKSTESTVDRGNFXXXXXXXXXXXXXRFKCNYYDPDTVLARVATEKRISLIKAWEESERSKAENK 1061
            AAE TE+KSTE +VDR                         D VLARVATEKRISLI AWEESE+SKAENK
Sbjct:   52 AAEATEKKSTEVSVDR-------------------------DAVLARVATEKRISLINAWEESEKSKAENK 97

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094252 vs. ExPASy TrEMBL
Match: A0A0A0LKG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G915100 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.078e-18
Identity = 71/95 (74.74%), Postives = 86/95 (90.53%), Query Frame = 3

Query: 1242 GRAHKKLSSIEAWENSXXXXXXXXXXXXXXXXXXXXXXYVEKMKNKIALIHXXXXXXXXXXXXXRGEDLLKAEEIAAKYRATGTTPNKVLGCFCG 1526
             +AHKKLSS+ AWENS+KA++EA+LKKIEE LEK+KA+Y+E+MKNKIAL+HK AEEK+A++EAKRGEDLLKAEE AAKYRATGT P K+LGCF  
Sbjct:   95 NKAHKKLSSVAAWENSQKASVEADLKKIEESLEKKKAKYIEQMKNKIALLHKSAEEKRAIIEAKRGEDLLKAEETAAKYRATGTAPKKLLGCFSS 189

HSP 2 Score: 61.2326 bits (147), Expect = 3.457e-7
Identity = 52/133 (39.10%), Postives = 61/133 (45.86%), Query Frame = 3

Query:  663 KDVAEEKSVIPPPTSEEKPAESAALQSIYLFCFFPCLV*Y*DRITXXXXXXXXXXXXXXMEEAAEPTEEKSTESTVDRGNFXXXXXXXXXXXXXRFKCNYYDPDTVLARVATEKRISLIKAWEESERSKAENK 1061
            KDV EEKSVIPPP  E K  +S AL    L    P                          E A+P   K+TE +V+R                         D VLA+VATEKR+SL+KAWEESE+SKAENK
Sbjct:   22 KDVTEEKSVIPPPP-EHKTDDSKAL---VLVEKVP--------------------------EVADP---KTTEGSVNR-------------------------DAVLAKVATEKRLSLVKAWEESEKSKAENK 96

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094252 vs. ExPASy TrEMBL
Match: B9R9C1_RICCO (Remorin, putative OS=Ricinus communis GN=RCOM_1496040 PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.562e-18
Identity = 77/93 (82.80%), Postives = 88/93 (94.62%), Query Frame = 3

Query: 1242 GRAHKKLSSIEAWENSXXXXXXXXXXXXXXXXXXXXXXYVEKMKNKIALIHXXXXXXXXXXXXXRGEDLLKAEEIAAKYRATGTTPNKVLGCF 1520
             +AHKKLS+I +WENSKKA++EAELK++EEKLEK+KAEYVEKMKNKIALIHKEAEEK+AM+EAKRGEDLLKAEE AAKYRATGT P K+LGCF
Sbjct:   90 NKAHKKLSAIVSWENSKKASVEAELKQMEEKLEKKKAEYVEKMKNKIALIHKEAEEKRAMIEAKRGEDLLKAEETAAKYRATGTAPKKLLGCF 182

HSP 2 Score: 70.4774 bits (171), Expect = 3.547e-10
Identity = 53/138 (38.41%), Postives = 60/138 (43.48%), Query Frame = 3

Query:  648 PPEAPKDVAEEKSVIPPPTSEEKPAESAALQSIYLFCFFPCLV*Y*DRITXXXXXXXXXXXXXXMEEAAEPTEEKSTESTVDRGNFXXXXXXXXXXXXXRFKCNYYDPDTVLARVATEKRISLIKAWEESERSKAENK 1061
            P E PKDVAEEKS IPPP     P E A+  S  L      +                              EEKSTE +V+R                         D VLARV TEKR+SLI+AWEESE+SKAENK
Sbjct:   14 PSEPPKDVAEEKSAIPPP-----PQEKASDDSKALVAVEKSV------------------------------EEKSTEGSVNR-------------------------DAVLARVETEKRVSLIRAWEESEKSKAENK 91

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094252 vs. ExPASy TrEMBL
Match: A0A067H589_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028704mg PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.302e-18
Identity = 74/93 (79.57%), Postives = 88/93 (94.62%), Query Frame = 3

Query: 1242 GRAHKKLSSIEAWENSXXXXXXXXXXXXXXXXXXXXXXYVEKMKNKIALIHXXXXXXXXXXXXXRGEDLLKAEEIAAKYRATGTTPNKVLGCF 1520
             +A KKLS++ AWENSKKA+LEA+LKKIEE+LE++KAEY EKMKNK+AL+HKEAEEK+AMVEA+RGED+LKAEEIAAKYRATGTTP K+LGCF
Sbjct:   91 NKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 183

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0094252 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0094252 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0094252 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 3


Match Name	E-value	Identity	Description
REMO_SOLTU	5.453e-18	80.43	Remorin OS=Solanum tuberosum PE=1 SV=1	[more]
Y3126_ARATH	2.993e-14	70.97	Uncharacterized protein At3g61260 OS=Arabidopsis t...	[more]
REMO_ARATH	5.369e-14	72.83	Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1	[more]

BLAST of g.barbadense_cottongen_reftransV1_0094252 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0P547_GOSAR	4.603e-38	59.62	Remorin OS=Gossypium arboreum GN=F383_26417 PE=4 S...	[more]
A0A0D2QD94_GOSRA	6.284e-38	59.62	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0P4P2_GOSAR	2.524e-34	97.01	Uncharacterized protein OS=Gossypium arboreum GN=F...	[more]
A0A0D2QW82_GOSRA	5.374e-20	89.25	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2MX32_GOSRA	1.684e-19	88.17	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2R358_GOSRA	2.784e-19	88.17	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2PAJ9_GOSRA	5.410e-19	88.17	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0A0LKG1_CUCSA	1.078e-18	74.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
B9R9C1_RICCO	1.562e-18	82.80	Remorin, putative OS=Ricinus communis GN=RCOM_1496...	[more]
A0A067H589_CITSI	2.302e-18	79.57	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 55..97
None	No IPR available	PANTHER	PTHR31775	FAMILY NOT NAMED	coord: 39..130
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 179..183
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 160..178
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..34
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 35..125
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 126..148
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 149..159
None	No IPR available	TMHMM	TMhelix		coord: 126..148
None	No IPR available	TMHMM	TMhelix		coord: 161..178
None	No IPR available	TMHMM	TMhelix		coord: 12..34
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 35..125 e-value: 3.8E-29 score: 100.6

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0094252 ID=g.barbadense_cottongen_reftransV1_0094252; Name=g.barbadense_cottongen_reftransV1_0094252; organism=Gossypium barbadense; type=contig; length=3014bp
GCTCCATAAAAATAATAGAGTATTAGCAAATGATGATTGCAGGATTGAGC
CTAATCTCCTTTGAATTCAATTATTTTAGCTCAAATCGATTGATTATGAC
ACTTCCCACTGCACCTTAAATCAGGATGAGAATTTGCACTCCCATTGGCA
TGATGTTGGTTCATTCTGCACTAATTCAAAACTTACGGCTCAAGTCACGA
GCTTTTAACCCCACCCATCTTTGAAATATAAACCCAACAGCGAAAGGATT
GTCAAAAAAATTTAACCTTCCAATCAATCATTCATTCAAATAAACAGACA
ATACCACAGAAATCAAAAAGATTTTCGTTTTTTAATTGTATTTGGTGATG
ATAACTTGGGTGTTTAGAAAAGGTTAGGCAGGTTGAATATCAAGTTCTCA
CTCAAAGCTTTTGCCCGACTGAGTCACTCTCAGCCAACGCACTATAAACC
ACTTGTACCTACCGTTGCAGATCAGCTCTGTCAATCAAACCAGCAAATAC
AACATCCTTTCCCTTCTCTTTTAATCTTTCTTGTCTTCTCTTTCACCTCG
CTTTGTTGTCCATCAGTTGAGGATTCTTGTCAACAAATAACGCATGGCAG
AGGAAGAACCCAAGAAGGTTGAAACCGTAACCCCCTCGGAGCAACCACCT
CCCGAAGCCCCCAAAGACGTTGCGGAGGAAAAATCGGTAATCCCACCTCC
TACCTCTGAAGAAAAACCTGCTGAGTCCGCCGCACTCCAAAGTATATACC
TTTTTTGTTTTTTTCCTTGTTTAGTTTAATATTAGGATAGGATTACTATT
GTTGTTATCTTTTTCCTTTTAAATTTAATTTTGGTGTTTATGGAAGAGGC
CGCGGAACCGACTGAGGAAAAGAGCACGGAGAGTACTGTGGACCGAGGTA
ATTTCTCCATATCTTAAGGTTTATTAATACTTGATTCATTATGAAGGTTT
AAATGTAATTACTATGATCCAGATACTGTGCTTGCTAGAGTTGCGACAGA
GAAGCGAATATCACTGATCAAAGCTTGGGAAGAGAGTGAAAGAAGCAAAG
CTGAAAACAAGTATGAACTGTTCTTCACTTTGTTTTTTTTTTTCTTTGAA
TTCATTGAGGAAACTTGATGGTATGAATTTTTGCATAACATAATATGCCA
AGTGCCAACAAAATTATACTTTTTAACTGCTTTTGGTTTAGATTTTCTGG
CTTTTATGTTACTCAAACTCTTGAGTTTATTGAAAATGTTGGGCAGAGCT
CATAAAAAACTTTCCTCTATCGAGGCATGGGAAAACAGCAAGAAAGCTGC
TCTGGAAGCTGAGCTGAAAAAGATTGAGGAAAAACTAGAGAAGCAGAAAG
CTGAGTATGTGGAGAAAATGAAAAACAAAATAGCCTTAATCCACAAGGAA
GCAGAAGAGAAGAAAGCTATGGTTGAAGCCAAGCGTGGGGAAGATCTTCT
CAAGGCTGAGGAGATAGCTGCCAAGTACCGTGCCACCGGAACTACTCCGA
ACAAGGTCCTTGGTTGTTTTTGTGGGTCAAATTCCTCTGGTTTAGGAAAT
GGGATCTTTTGTATATTTGCTTTTAGGATGTCTTTGGATTGGTTTTATGT
AGTGAAGCATTGGCCATTGTTCATTATTCTGTGTGTGTATATAGATATAG
TATTATACCATTTGGAACAAATTACTTATTGATTTGTAAGTAACAAGTTT
GATGTAATAATGTTTGAATCATGTAGATTATAGATCGAAGTACATTATTT
ATGTTTTAATATTTACAATCCAGCTTTTCAGTATGGTTTTAGCTTAGTTG
CTCTATCTCTAAGGCAACTCCTAGTTTGTGACATGAATGCTGCAATCGAT
TAGGTTCATGCAATCTTCAAATGAAGGTTTTATTGACTAATTTAATGATG
ATTGAAAAGCACAATCTCCTTGATTTTCATCTTCATCCATTCCTATCCCT
TGCAATAGTTGTTTAGTTTCCAGAGCTTGACACCCATAATCCTTCATGCT
GCTCCATTATCCTTCAAACCATCAATAGTTCTCTGTAGTTGACTCTACAA
CATAATGTTTGTCTGTCGAATCTGATACTGTAAGGGGCAATAACATTGGA
TAGATGGGTCATCAGTGAGGTTAAAAGAATAGACATTCCCTCTCCAATCA
ACTGCATAAAACACATCTTCAAAGTCTTTGGGTAATGCCTATGATTGGTC
TAAAAAACGTTAGTCTACCAGACTCACCAAGTATAGCCATTACCATGTAA
TCATCAGGGCTTGATTCTGGGTTAGCAGAAAATACAAGCTTTTTTCTTAG
GCTAAATTCAAATACTGCAACGTTGTAATGATGCAATGATCAATCATTGG
AGCCTAGCCCTAATGACTAAACGAGAATGGAGGTATTACAAGAGTAAAAG
TAATGCAAACAGATACGTTGTCCAGCGGATTGAATAAAATGAAGAGCGAA
TGATTCCAAATACCTTGGACATCTCTAAGGACAAGAAGCATTGGAAGACA
TGGGTAGGGAGAAGGAGCATTGAAAGTTGTGGAGGCAGAAGTTGTTGATT
CTGTCCATTGCAACACTGTGCCACGTTTTGCATACCGCTCCAAATCGCAA
ATAATCAGACACCGAAATCAGTTTTGCTAATATCAAATCAACCAGGTCCC
TGGATAACCCTGCCCAATCTGAATCCATGTTCTAGCTAAACAGAATTTGG
TTCTGTGTTGGCAGCTCAGATTGTTATTTTATATCAGTCGAAACACTAGT
GCTATGAGATCCAATACGTTTAGAAGTCGGAAACCCTCTTGTATATATAT
ACATATATAAAGATTGAGACAACTATAGTTCTGAGATCCTTCGAGACTCT
ACTGGGTTAAGGCCTCTCGGAAACCCCAATACGTTAGCATTTGATGGGAA
AGATGAAATATTGTAAACTACTACTGCCTTGTAAAGTGATTAAAAAAAAG
AGAGAGACGCTATTAAAACAGGCAGGGCAGGTGTTTTTCTGAGGGATTTC
TTAGCAAATACATG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR005516	Remorin_C

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g.barbadense_cottongen_reftransV1_0094252, g.barbadense_cottongen_reftransV1_0094252 (contig) Gossypium barbadense

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