g.barbadense_cottongen_reftransV1_0093808, g.barbadense_cottongen_reftransV1_0093808 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0093808
Unique Name	g.barbadense_cottongen_reftransV1_0093808
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2117

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt01	chromosome	g.barbadense_cottongen_reftransV1_0093808:3..2117 . Dt01:55613502..55620845 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy Swiss-Prot
Match: PUSL1_MOUSE (tRNA pseudouridine synthase-like 1 OS=Mus musculus GN=Pusl1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.502e-25
Identity = 48/109 (44.04%), Postives = 64/109 (58.72%), Query Frame = -2

Query:  983 EPAVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSG-SEP--LSTFEKERAWHV-PEKLDLNAMQEACKVLVGHHDFSSFRAAGCQVVTFLMCIK 1297
             P VV +A+N  L+     I V+    VPNDFHAR  A  RTY YRL +G S P  L  FE+   W +  E LD+ AMQEA + L+G HDFS+F++AG  V   +  ++
Sbjct:   90 SPEVVAKALNTHLKHPA--IRVLKAFRVPNDFHARHAATSRTYQYRLATGCSWPNQLPVFEQNVCWALQTEYLDMAAMQEAAQHLLGTHDFSAFQSAGSPVTNTVRTLR 196

HSP 2 Score: 61.2326 bits (147), Expect = 4.502e-25
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = -1

Query: 1419 RYLVAIEYIGTRFSGS---QQQPNCRTVVGVLEEAFHKFIG-QPVSIFSSSRTDAGVHALSNVCHVDVERISKRKPGE 1640
            RYLV ++Y+GT F+G    +  P    V+  LEEA  +     PV    SSRTDAGVHALSN  H+D++    R+PG+
Sbjct:   13 RYLVFLQYLGTDFNGVAAVRGNPRAVGVLNFLEEAAKRLNSVDPVRFTISSRTDAGVHALSNAAHLDIQ----RRPGQ 86

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BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy Swiss-Prot
Match: TRUA_NEOSM (tRNA pseudouridine synthase A OS=Neorickettsia sennetsu (strain Miyayama) GN=truA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.616e-23
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = -2

Query: 1013 EPAVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGC 1297
            +P  +  AVN+ L+  E  I ++ +  V   F ARF A  R Y Y++ +   PL+ F K R+WHVP+ L+L+ ++E  + LVG HDF SFR++ C
Sbjct:   71 QPFQIVNAVNYHLK--EKLIVLLKIEIVDETFDARFSAIRRHYQYKITNRKTPLAVF-KNRSWHVPQTLNLDLIREQAQYLVGKHDFQSFRSSKC 162

HSP 2 Score: 56.9954 bits (136), Expect = 2.616e-23
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = -1

Query: 1413 RYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVDVERISKRKPGEVV 1640
            RY   +EY+GT FSG Q+Q +  +V   LE      + + +++  + RTDAGVHAL  V H D  R S  +P ++V
Sbjct:    2 RYKAIVEYVGTGFSGWQKQMSAPSVQEELESVLSFLLKEKIAVNVAGRTDAGVHALGQVFHFDA-RESTLQPFQIV 76

HSP 3 Score: 60.4622 bits (145), Expect = 8.821e-9
Identity = 30/82 (36.59%), Postives = 46/82 (56.10%), Query Frame = -1

Query:  387 TNNGKSNLEEFGIRRRHRSYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERIMNAKTVTAASPMAPACGLYLGRVKY 632
             +N    L+   + +     +  A A+SFL+HQVR++VG L  + +G+L +  V  I++ K    A P AP CGLYL +V Y
Sbjct:  164 ASNAIRTLDRLEVEKNGEEMIFHASAKSFLHHQVRIMVGTLVAIASGKLMS--VTEILSKKNRRYAGPTAPPCGLYLLKVDY 243

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy Swiss-Prot
Match: TRUA_RHIME (tRNA pseudouridine synthase A OS=Rhizobium meliloti (strain 1021) GN=truA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.248e-18
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = -2

Query:  986 VVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQVVTFLMCI 1288
             ++ A+N  L      +S++DV   P DF ARF A  R Y YR++S   PL+  E  RAW VP+ LD +AM EA + LVGHHDF++FR+A CQ  + L  +
Sbjct:   74 TLQNALNAHLALAGERVSILDVAEAPGDFDARFSAIRRHYLYRIISRRSPLA-LEARRAWWVPKPLDHDAMHEAAQRLVGHHDFTTFRSAHCQATSPLRTL 173

HSP 2 Score: 56.6102 bits (135), Expect = 1.498e-7
Identity = 28/71 (39.44%), Postives = 42/71 (59.15%), Query Frame = -1

Query: 1434 IQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVDVERISK 1646
            + RY + +EY G+ + G Q+Q N  +V G +E+A      + VSI  + RTD+GVHA   V H+D+ R  K
Sbjct:    1 MPRYRLTVEYDGSDYVGWQRQDNGPSVQGAIEKAVLSLTRETVSIRGAGRTDSGVHARGQVAHLDLTREWK 71

HSP 3 Score: 55.8398 bits (133), Expect = 2.721e-7
Identity = 26/61 (42.62%), Postives = 37/61 (60.66%), Query Frame = -1

Query:  387 VTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERIMNAKTVTAASPMAPACGLYLGRVKY 569
            + A A+SFL++Q+R   G LK VG G+ T  D++  + A+   A  P+AP  GLY  RV Y
Sbjct:  187 IRATAQSFLHNQIRSFAGSLKLVGEGKWTPDDLQAALEARDRKACGPVAPPDGLYFMRVDY 247

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy Swiss-Prot
Match: TRUA_RHILO (tRNA pseudouridine synthase A OS=Rhizobium loti (strain MAFF303099) GN=truA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.121e-17
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = -2

Query: 1007 VRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQV 1285
            VR AVN  LQ     ++++    VP+DF ARF A  R Y YR+++   P +  EK + W VP++LD  AM EA K+L+G HDF++FR+  CQ 
Sbjct:   75 VRDAVNAHLQAAGAHVAILKAAIVPDDFDARFSATGRHYLYRILNRRAP-AALEKGKVWWVPKRLDAGAMHEAAKLLLGRHDFTTFRSTQCQA 166

HSP 2 Score: 62.3882 bits (150), Expect = 1.887e-9
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = -1

Query: 1413 IQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVDVERISKRKPGEVV 1646
            + R+ + IEY G+ F+G Q Q +  +V   +E+A  KF G+ V + ++ RTDAGVHA + V HVD   ++K  PG+ V
Sbjct:    1 MPRFRLDIEYDGSLFAGWQHQADQPSVQQAIEQAIEKFCGEAVRLRAAGRTDAGVHASAQVAHVD---LAKPWPGDKV 75

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy Swiss-Prot
Match: TRUA_SINMW (tRNA pseudouridine synthase A OS=Sinorhizobium medicae (strain WSM419) GN=truA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.473e-17
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = -2

Query:  986 EPAVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQVVTFLMCI 1297
            +P  ++ A+N  L      +S+++V     DF ARF A  R Y YR++S   PL+  E  RAW VP+ LD +AM EA + L+GHHDF++FR+A CQ  + +  +
Sbjct:   71 KPYTLQNALNAHLSLAGERVSILEVEEAAADFDARFSAIRRHYLYRIISRRSPLA-LEARRAWWVPKALDHDAMHEAAQRLLGHHDFTTFRSANCQATSPMRTL 173

HSP 2 Score: 58.151 bits (139), Expect = 5.362e-8
Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = -1

Query: 1434 IQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVDVERISK 1646
            + R+ + +EY GT + G Q+Q N  +V G +E+A     G+ V +  + RTD+GVHA   V H+D+ R  K
Sbjct:    1 MPRFRLIVEYDGTDYVGWQRQDNGPSVQGAIEKAVLSLTGETVRVRGAGRTDSGVHARGQVAHLDLTRAWK 71

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy Swiss-Prot
Match: TRUA_RHISN (tRNA pseudouridine synthase A OS=Rhizobium sp. (strain NGR234) GN=truA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 6.712e-17
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = -2

Query:  986 ISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQVVTFLMCI 1240
            +S++D   VP +F ARF A  R Y YR++S   PL+  E  RAW VP+ LD  AM EA + LVGHHDF++FR+A CQ  + L  I
Sbjct:   90 VSILDAAEVPPEFDARFSAIRRHYLYRIISRRSPLA-LEARRAWWVPKTLDHEAMHEAAQHLVGHHDFTTFRSAHCQANSPLRTI 173

HSP 2 Score: 62.003 bits (149), Expect = 2.700e-9
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = -1

Query: 1443 IQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVDVER 1646
            + RY + +EY G+ + G Q+Q N  +V G +E+A     G+ VSI  + RTD+GVHA+  V H+D+ R
Sbjct:    1 MPRYRLTVEYDGSDYVGWQRQENGPSVQGAIEKAVLSLTGETVSIRGAGRTDSGVHAMGQVAHLDLTR 68

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy Swiss-Prot
Match: TRUA_BART1 (tRNA pseudouridine synthase A OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=truA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.266e-17
Identity = 39/104 (37.50%), Postives = 64/104 (61.54%), Query Frame = -2

Query:  983 PAVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQVVTFLMCIK 1294
            P  VR A+N  L++    IS+++V  VP+DF ARF A +R Y +++++   P      +R W +P+ L+  AM EA + LVG HDF++FR+A CQ  + +  ++
Sbjct:   72 PHTVRDALNALLRQQSEAISILNVENVPDDFDARFSAIKRHYLFKILNRRSP-PALNAKRVWWIPKPLNAQAMHEAAQKLVGQHDFTTFRSAHCQAKSPIRTLE 174

HSP 2 Score: 65.4698 bits (158), Expect = 1.721e-10
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = -1

Query: 1452 IQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVD 1646
            + R+ + +EY G+ ++G Q+Q    T+ G LE+A  +F GQ ++I ++ RTDAGVHA   V HVD
Sbjct:    1 MSRFKLTLEYDGSNYAGWQRQAKLHTIQGALEQAIFRFSGQQLTITTAGRTDAGVHATGQVAHVD 65

HSP 3 Score: 60.4622 bits (145), Expect = 7.428e-9
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = -1

Query:  387 LEEFGIRRRHRSYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERIMNAKTVTAASPMAPACGLYLGRVKY 611
            LE   I++      + A+ARSFL+HQ+R   G L  VG G  T  D+E  ++AK       +AP  GLYL +V+Y
Sbjct:  173 LERLDIQKEGEEIFIYAKARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKRCGVVAPPSGLYLTKVEY 247

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy Swiss-Prot
Match: TRUA_BARQU (tRNA pseudouridine synthase A OS=Bartonella quintana (strain Toulouse) GN=truA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.027e-16
Identity = 38/94 (40.43%), Postives = 64/94 (68.09%), Query Frame = -2

Query: 1007 VVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQV 1288
             VR A+N +LQK   +I+V++V+ VP++F ARF A +R Y +++++   P      +R W +P+ L+++AM +A + LVG HDF++FR+A CQ 
Sbjct:   74 TVRDALNAYLQKQGEEIAVLNVQNVPDNFDARFSAIKRHYLFKILNRLSP-PALNIKRVWWIPKPLNVDAMHQAAQKLVGQHDFTTFRSAHCQA 166

HSP 2 Score: 58.9214 bits (141), Expect = 2.688e-8
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = -1

Query: 1452 RYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVD 1640
            R+ + +EY G+ ++G Q+Q    T+   LE+A   F GQ ++  ++ RTDAGVHA   V HVD
Sbjct:    3 RFKLTLEYDGSNYAGWQRQAELHTIQSALEQAIFHFSGQQLTTTTAGRTDAGVHATGQVAHVD 65

HSP 3 Score: 58.5362 bits (140), Expect = 4.206e-8
Identity = 30/75 (40.00%), Postives = 40/75 (53.33%), Query Frame = -1

Query:  387 LEEFGIRRRHRSYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERIMNAKTVTAASPMAPACGLYLGRVKY 611
            LE   + R      + A+ARSFL+HQ+R   G L  VG G  T  D+E  ++AK       +AP  GLYL +V Y
Sbjct:  173 LERLDVYREGEEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKRCGMVAPPSGLYLTQVDY 247

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy Swiss-Prot
Match: TRUA_XANP2 (tRNA pseudouridine synthase A OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=truA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.075e-16
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = -2

Query:  986 ISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQVVTFLMCI 1240
            I+V+    VP+ F ARF A +R Y YR+++   P    +++RAW +P+KLD  AM EA + L+G HDFS+FRAA CQ  + L  +
Sbjct:   88 IAVLSAEEVPDSFDARFSATKRHYLYRIIN-RRPDLALDRDRAWRIPQKLDAQAMHEAAQRLLGKHDFSTFRAAECQAASPLKTL 171

HSP 2 Score: 69.3218 bits (168), Expect = 1.001e-11
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = -1

Query: 1443 IQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVDVER 1646
            + RY + IEY GT ++G Q Q + +TV G L +AF +F G+ V +  + RTDAGVHA   V HVD+ R
Sbjct:    1 MPRYKLTIEYDGTPYAGWQIQADQQTVQGALAQAFKRFCGEDVHVAGAGRTDAGVHATGQVAHVDLSR 68

HSP 3 Score: 64.6994 bits (156), Expect = 3.054e-10
Identity = 33/76 (43.42%), Postives = 41/76 (53.95%), Query Frame = -1

Query:  387 NLEEFGIRRRHRSYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERIMNAKTVTAASPMAPACGLYLGRVKY 614
             L++  + R      V   ARSFL+HQVR +VG L  VG G  +  D+E  + A   T   PMAPA GLYL  V Y
Sbjct:  170 TLDQLDVSRSGDEIRVITSARSFLHHQVRSMVGSLMRVGEGRWSADDLEAALKAADRTRCGPMAPAAGLYLAAVSY 245

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy Swiss-Prot
Match: TRUA_BEII9 (tRNA pseudouridine synthase A OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=truA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.162e-16
Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = -2

Query:  983 PAVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQVVTFLMCIK 1294
            P V+R A+N  ++     ++V+    VP  F ARF A  R Y YR+++   PL TFE  RAW V  +LD  AM EA +VL G HDFS+FRAA CQ  + +  ++
Sbjct:   72 PDVLRDALNAHMRPAL--VAVVAAEPVPETFDARFSAIRRHYLYRIINRRAPL-TFEAGRAWLVKRRLDARAMHEAAQVLTGRHDFSTFRAAECQAASPIRTLE 172

HSP 2 Score: 60.077 bits (144), Expect = 1.361e-8
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = -1

Query: 1443 IQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVDVER 1646
            + RY + +EY G  F G Q+Q N  +V  V+E A     G PV I  + RTDAGVHA + V H D+ R
Sbjct:    1 MPRYKLTVEYDGASFVGWQRQKNGLSVQEVIETALLAINGAPVGIRGAGRTDAGVHASAQVAHADLAR 68

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy TrEMBL
Match: A0A0B0PZE8_GOSAR (tRNA pseudouridine synthase OS=Gossypium arboreum GN=F383_14017 PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.445e-107
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = -1

Query: 1413 MTGSPTESRPSKILKTQDHNXXXXXXXXXXXLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVDVERISKRKPGEVV 1763
            MTGSPTESRPSKILKTQDHNDQDKEDKQLQDLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIF SSRTDAGVHALSNVCHVDVERISKRKPGEV+
Sbjct:    1 MTGSPTESRPSKILKTQDHNDQDKEDKQLQDLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVL 117

HSP 2 Score: 206.453 bits (524), Expect = 3.445e-107
Identity = 98/112 (87.50%), Postives = 102/112 (91.07%), Query Frame = -2

Query:  965 HEPAVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQVVTFLMCIKYHYHMC 1300
            HEPAVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDL AMQEACKVLVGHHDFSSFRAAGCQ  + +  +    H+C
Sbjct:  120 HEPAVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLYAMQEACKVLVGHHDFSSFRAAGCQANSPIRTLD-ELHVC 230

HSP 3 Score: 291.582 bits (745), Expect = 8.570e-88
Identity = 140/147 (95.24%), Postives = 144/147 (97.96%), Query Frame = -1

Query:  378 ANSPIRTLDELHVCEVPATPYFPSITEREQNNSSLKDSHTCSVKPDVELPINSFSNTNDMVDTNNGKSNLEEFGIRRRHRSYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERIMNAKTVTAASPMAPACGLYLGRVKYDLP 818
            ANSPIRTLDELHVCEVPATPYFPSITEREQNNSSLKDS TCSVKP+V LPINSFSNT+DMVDTNNGKSNLEEFGIRRRHRSY+VTARARSFLYHQVRLLVGVLKCVGTGEL TSDVERI+NAKTVTAASPMAPACGLYLGRVKYDLP
Sbjct:  217 ANSPIRTLDELHVCEVPATPYFPSITEREQNNSSLKDSLTCSVKPEVGLPINSFSNTDDMVDTNNGKSNLEEFGIRRRHRSYMVTARARSFLYHQVRLLVGVLKCVGTGELMTSDVERILNAKTVTAASPMAPACGLYLGRVKYDLP 363

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy TrEMBL
Match: A0A0D2QA78_GOSRA (tRNA pseudouridine synthase OS=Gossypium raimondii GN=B456_002G216900 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.822e-106
Identity = 98/112 (87.50%), Postives = 103/112 (91.96%), Query Frame = -2

Query:  965 HEPAVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQVVTFLMCIKYHYHMC 1300
            HEP+VVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQ  + +  +    H+C
Sbjct:  120 HEPSVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQANSPIRTLD-ELHVC 230

HSP 2 Score: 206.838 bits (525), Expect = 2.822e-106
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = -1

Query: 1413 MTGSPTESRPSKILKTQDHNXXXXXXXXXXXLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVDVERISKRKPGEVV 1763
            MTGSPTESRPSKILKTQ H DQDKEDKQLQDLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIF SSRTDAGVHALSNVCHVDVERISKRKPGEV+
Sbjct:    1 MTGSPTESRPSKILKTQGHTDQDKEDKQLQDLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVL 117

HSP 3 Score: 299.671 bits (766), Expect = 7.190e-91
Identity = 144/147 (97.96%), Postives = 146/147 (99.32%), Query Frame = -1

Query:  378 ANSPIRTLDELHVCEVPATPYFPSITEREQNNSSLKDSHTCSVKPDVELPINSFSNTNDMVDTNNGKSNLEEFGIRRRHRSYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERIMNAKTVTAASPMAPACGLYLGRVKYDLP 818
            ANSPIRTLDELHVCEVPATPYFPSITEREQNNSSLKDSHTCSVKP+VELPINSFSNTNDMVDTNNGKSNLEEFGIRRRH SYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERI+NAKTVTAASPMAPACGLYLGRVKYDLP
Sbjct:  217 ANSPIRTLDELHVCEVPATPYFPSITEREQNNSSLKDSHTCSVKPEVELPINSFSNTNDMVDTNNGKSNLEEFGIRRRHCSYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERILNAKTVTAASPMAPACGLYLGRVKYDLP 363

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy TrEMBL
Match: A0A0D2NR71_GOSRA (tRNA pseudouridine synthase OS=Gossypium raimondii GN=B456_002G216900 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 7.107e-106
Identity = 98/112 (87.50%), Postives = 103/112 (91.96%), Query Frame = -2

Query:  965 HEPAVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQVVTFLMCIKYHYHMC 1300
            HEP+VVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQ  + +  +    H+C
Sbjct:  120 HEPSVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQANSPIRTLD-ELHVC 230

HSP 2 Score: 206.453 bits (524), Expect = 7.107e-106
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = -1

Query: 1413 MTGSPTESRPSKILKTQDHNXXXXXXXXXXXLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVDVERISKRKPGEVV 1763
            MTGSPTESRPSKILKTQ H DQDKEDKQLQDLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIF SSRTDAGVHALSNVCHVDVERISKRKPGEV+
Sbjct:    1 MTGSPTESRPSKILKTQGHTDQDKEDKQLQDLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVL 117

HSP 3 Score: 196.823 bits (499), Expect = 3.508e-53
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = -1

Query:  534 ANSPIRTLDELHVCEVPATPYFPSITEREQNNSSLKDSHTCSVKPDVELPINSFSNTNDMVDTNNGKSNLEEFGIRRRHRSYVVTARARSFLYHQ 818
            ANSPIRTLDELHVCEVPATPYFPSITEREQNNSSLKDSHTCSVKP+VELPINSFSNTNDMVDTNNGKSNLEEFGIRRRH SYVVTARARSFLYHQ
Sbjct:  217 ANSPIRTLDELHVCEVPATPYFPSITEREQNNSSLKDSHTCSVKPEVELPINSFSNTNDMVDTNNGKSNLEEFGIRRRHCSYVVTARARSFLYHQ 311

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy TrEMBL
Match: A0A0D2QGW3_GOSRA (tRNA pseudouridine synthase OS=Gossypium raimondii GN=B456_002G216900 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.750e-105
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = -2

Query: 1010 HEPAVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQ 1300
            HEP+VVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQ
Sbjct:  120 HEPSVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQ 216

HSP 2 Score: 206.068 bits (523), Expect = 1.750e-105
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = -1

Query: 1413 MTGSPTESRPSKILKTQDHNXXXXXXXXXXXLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVDVERISKRKPGEVV 1763
            MTGSPTESRPSKILKTQ H DQDKEDKQLQDLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIF SSRTDAGVHALSNVCHVDVERISKRKPGEV+
Sbjct:    1 MTGSPTESRPSKILKTQGHTDQDKEDKQLQDLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVL 117

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy TrEMBL
Match: A0A0D2ME97_GOSRA (tRNA pseudouridine synthase OS=Gossypium raimondii GN=B456_002G216900 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.917e-104
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = -1

Query: 1413 MTGSPTESRPSKILKTQDHNXXXXXXXXXXXLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVDVERISKRKPGEVV 1763
            MTGSPTESRPSKILKTQ H DQDKEDKQLQDLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIF SSRTDAGVHALSNVCHVDVERISKRKPGEV+
Sbjct:    1 MTGSPTESRPSKILKTQGHTDQDKEDKQLQDLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVL 117

HSP 2 Score: 202.216 bits (513), Expect = 2.917e-104
Identity = 97/112 (86.61%), Postives = 102/112 (91.07%), Query Frame = -2

Query:  965 HEPAVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQVVTFLMCIKYHYHMC 1300
            HEP+VVRRAVNHFLQ NEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQ  + +  +    H+C
Sbjct:  120 HEPSVVRRAVNHFLQ-NEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQANSPIRTLD-ELHVC 229

HSP 3 Score: 299.671 bits (766), Expect = 7.120e-91
Identity = 144/147 (97.96%), Postives = 146/147 (99.32%), Query Frame = -1

Query:  378 ANSPIRTLDELHVCEVPATPYFPSITEREQNNSSLKDSHTCSVKPDVELPINSFSNTNDMVDTNNGKSNLEEFGIRRRHRSYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERIMNAKTVTAASPMAPACGLYLGRVKYDLP 818
            ANSPIRTLDELHVCEVPATPYFPSITEREQNNSSLKDSHTCSVKP+VELPINSFSNTNDMVDTNNGKSNLEEFGIRRRH SYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERI+NAKTVTAASPMAPACGLYLGRVKYDLP
Sbjct:  216 ANSPIRTLDELHVCEVPATPYFPSITEREQNNSSLKDSHTCSVKPEVELPINSFSNTNDMVDTNNGKSNLEEFGIRRRHCSYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERILNAKTVTAASPMAPACGLYLGRVKYDLP 362

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy TrEMBL
Match: A0A0D2RAH5_GOSRA (tRNA pseudouridine synthase OS=Gossypium raimondii GN=B456_002G216900 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.494e-103
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = -1

Query: 1413 MTGSPTESRPSKILKTQDHNXXXXXXXXXXXLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVDVERISKRKPGEVV 1763
            MTGSPTESRPSKILKTQ H DQDKEDKQLQDLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIF SSRTDAGVHALSNVCHVDVERISKRKPGEV+
Sbjct:    1 MTGSPTESRPSKILKTQGHTDQDKEDKQLQDLSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVL 117

HSP 2 Score: 200.29 bits (508), Expect = 1.494e-103
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = -2

Query: 1010 HEPAVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQ 1300
            HEP+VVRRAVNHFLQ NEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQ
Sbjct:  120 HEPSVVRRAVNHFLQ-NEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQ 215

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy TrEMBL
Match: A0A061DXC2_THECC (tRNA pseudouridine synthase OS=Theobroma cacao GN=TCM_006169 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 8.365e-98
Identity = 91/98 (92.86%), Postives = 96/98 (97.96%), Query Frame = -2

Query: 1007 HEPAVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQV 1300
            HEP+VVRRAVNHFLQK+EGDI+VIDVRCVPNDFHAR+KAQERTYFYRL+SGSEPLSTFEKERAWHVPEKLDL AMQEACKVLVGHHDFSSFRAAGCQ 
Sbjct:  130 HEPSVVRRAVNHFLQKSEGDITVIDVRCVPNDFHARYKAQERTYFYRLLSGSEPLSTFEKERAWHVPEKLDLYAMQEACKVLVGHHDFSSFRAAGCQA 227

HSP 2 Score: 187.578 bits (475), Expect = 8.365e-98
Identity = 99/127 (77.95%), Postives = 110/127 (86.61%), Query Frame = -1

Query: 1413 LREKRLNEMTGSPTESRPSKILKTQDHNXXXXXXXXXXX--LSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVDVERISKRKPGEVV 1787
            + E   + ++ +P  SRPSKI KTQDH+DQ++E++  Q    SMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAF KFIGQPVSIF SSRTDAGVHALSNVCHVDVERISKRKPGEV+
Sbjct:    1 MSENPKHSLSTTPESSRPSKIPKTQDHSDQEEEEEDKQQQESSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFLKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVL 127

HSP 3 Score: 176.022 bits (445), Expect = 1.331e-45
Identity = 90/147 (61.22%), Postives = 103/147 (70.07%), Query Frame = -1

Query:  378 ANSPIRTLDELHVCEVPATPYFPSITEREQNNSSLKDSHTCSVKPDVELPINSFSNTNDMVDTNNGKSNLEEFGIRRRHRSYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERIMNAKTVTAASPMAPACGLYLGRVKYDLP 818
            A SPIRTLDELHV E P TPYFPSI+E++QNNSS +DSH CS +P+++LPI+SFSN++D                                   +VRLLVGVLKCVGTGELTTSDVERI+NAKTVTAASPMAPA GLYLG VKYDLP
Sbjct:  227 AKSPIRTLDELHVSEAPPTPYFPSISEKKQNNSSTEDSHACSREPEIDLPIDSFSNSDD-----------------------------------EVRLLVGVLKCVGTGELTTSDVERILNAKTVTAASPMAPAYGLYLGCVKYDLP 338

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy TrEMBL
Match: A0A061DW68_THECC (tRNA pseudouridine synthase OS=Theobroma cacao GN=TCM_006169 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.951e-97
Identity = 91/98 (92.86%), Postives = 96/98 (97.96%), Query Frame = -2

Query: 1007 HEPAVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQV 1300
            HEP+VVRRAVNHFLQK+EGDI+VIDVRCVPNDFHAR+KAQERTYFYRL+SGSEPLSTFEKERAWHVPEKLDL AMQEACKVLVGHHDFSSFRAAGCQ 
Sbjct:  130 HEPSVVRRAVNHFLQKSEGDITVIDVRCVPNDFHARYKAQERTYFYRLLSGSEPLSTFEKERAWHVPEKLDLYAMQEACKVLVGHHDFSSFRAAGCQA 227

HSP 2 Score: 186.808 bits (473), Expect = 1.951e-97
Identity = 99/127 (77.95%), Postives = 110/127 (86.61%), Query Frame = -1

Query: 1413 LREKRLNEMTGSPTESRPSKILKTQDHNXXXXXXXXXXX--LSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVDVERISKRKPGEVV 1787
            + E   + ++ +P  SRPSKI KTQDH+DQ++E++  Q    SMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAF KFIGQPVSIF SSRTDAGVHALSNVCHVDVERISKRKPGEV+
Sbjct:    1 MSENPKHSLSTTPESSRPSKIPKTQDHSDQEEEEEDKQQQESSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFLKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVL 127

HSP 3 Score: 232.646 bits (592), Expect = 1.671e-65
Identity = 115/147 (78.23%), Postives = 130/147 (88.44%), Query Frame = -1

Query:  378 ANSPIRTLDELHVCEVPATPYFPSITEREQNNSSLKDSHTCSVKPDVELPINSFSNTNDMVDTNNGKSNLEEFGIRRRHRSYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERIMNAKTVTAASPMAPACGLYLGRVKYDLP 818
            A SPIRTLDELHV E P TPYFPSI+E++QNNSS +DSH CS +P+++LPI+SFSN++D V +N G ++L  FGIRRRH  YVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERI+NAKTVTAASPMAPA GLYLG VKYDLP
Sbjct:  227 AKSPIRTLDELHVSEAPPTPYFPSISEKKQNNSSTEDSHACSREPEIDLPIDSFSNSDDEVGSN-GITDLG-FGIRRRHHCYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERILNAKTVTAASPMAPAYGLYLGCVKYDLP 371

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy TrEMBL
Match: A0A061DWJ3_THECC (tRNA pseudouridine synthase OS=Theobroma cacao GN=TCM_006169 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 3.241e-97
Identity = 91/105 (86.67%), Postives = 99/105 (94.29%), Query Frame = -2

Query:  986 HEPAVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQVVTFLMCI 1300
            HEP+VVRRAVNHFLQK+EGDI+VIDVRCVPNDFHAR+KAQERTYFYRL+SGSEPLSTFEKERAWHVPEKLDL AMQEACKVLVGHHDFSSFRAAGCQ  + +  +
Sbjct:  130 HEPSVVRRAVNHFLQKSEGDITVIDVRCVPNDFHARYKAQERTYFYRLLSGSEPLSTFEKERAWHVPEKLDLYAMQEACKVLVGHHDFSSFRAAGCQAKSPIRTL 234

HSP 2 Score: 186.422 bits (472), Expect = 3.241e-97
Identity = 99/127 (77.95%), Postives = 110/127 (86.61%), Query Frame = -1

Query: 1413 LREKRLNEMTGSPTESRPSKILKTQDHNXXXXXXXXXXX--LSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVDVERISKRKPGEVV 1787
            + E   + ++ +P  SRPSKI KTQDH+DQ++E++  Q    SMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAF KFIGQPVSIF SSRTDAGVHALSNVCHVDVERISKRKPGEV+
Sbjct:    1 MSENPKHSLSTTPESSRPSKIPKTQDHSDQEEEEEDKQQQESSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFLKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVL 127

HSP 3 Score: 177.178 bits (448), Expect = 6.504e-46
Identity = 86/115 (74.78%), Postives = 100/115 (86.96%), Query Frame = -1

Query:  474 ANSPIRTLDELHVCEVPATPYFPSITEREQNNSSLKDSHTCSVKPDVELPINSFSNTNDMVDTNNGKSNLEEFGIRRRHRSYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSD 818
            A SPIRTLDELHV E P TPYFPSI+E++QNNSS +DSH CS +P+++LPI+SFSN++D V + NG ++L  FGIRRRH  YVVTARARSFLYHQVRLLVGVLKCVGTGELTTSD
Sbjct:  227 AKSPIRTLDELHVSEAPPTPYFPSISEKKQNNSSTEDSHACSREPEIDLPIDSFSNSDDEVGS-NGITDL-GFGIRRRHHCYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSD 339

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy TrEMBL
Match: A0A061DY96_THECC (tRNA pseudouridine synthase OS=Theobroma cacao GN=TCM_006169 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.838e-95
Identity = 90/98 (91.84%), Postives = 95/98 (96.94%), Query Frame = -2

Query: 1007 HEPAVVRRAVNHFLQKNEGDISVIDVRCVPNDFHARFKAQERTYFYRLVSGSEPLSTFEKERAWHVPEKLDLNAMQEACKVLVGHHDFSSFRAAGCQV 1300
            HEP+VVRRAVNHFLQ +EGDI+VIDVRCVPNDFHAR+KAQERTYFYRL+SGSEPLSTFEKERAWHVPEKLDL AMQEACKVLVGHHDFSSFRAAGCQ 
Sbjct:  130 HEPSVVRRAVNHFLQ-SEGDITVIDVRCVPNDFHARYKAQERTYFYRLLSGSEPLSTFEKERAWHVPEKLDLYAMQEACKVLVGHHDFSSFRAAGCQA 226

HSP 2 Score: 186.808 bits (473), Expect = 1.838e-95
Identity = 99/127 (77.95%), Postives = 110/127 (86.61%), Query Frame = -1

Query: 1413 LREKRLNEMTGSPTESRPSKILKTQDHNXXXXXXXXXXX--LSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFHKFIGQPVSIFSSSRTDAGVHALSNVCHVDVERISKRKPGEVV 1787
            + E   + ++ +P  SRPSKI KTQDH+DQ++E++  Q    SMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAF KFIGQPVSIF SSRTDAGVHALSNVCHVDVERISKRKPGEV+
Sbjct:    1 MSENPKHSLSTTPESSRPSKIPKTQDHSDQEEEEEDKQQQESSMSKNPRIQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFLKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVL 127

HSP 3 Score: 232.646 bits (592), Expect = 1.610e-65
Identity = 115/147 (78.23%), Postives = 130/147 (88.44%), Query Frame = -1

Query:  378 ANSPIRTLDELHVCEVPATPYFPSITEREQNNSSLKDSHTCSVKPDVELPINSFSNTNDMVDTNNGKSNLEEFGIRRRHRSYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERIMNAKTVTAASPMAPACGLYLGRVKYDLP 818
            A SPIRTLDELHV E P TPYFPSI+E++QNNSS +DSH CS +P+++LPI+SFSN++D V +N G ++L  FGIRRRH  YVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERI+NAKTVTAASPMAPA GLYLG VKYDLP
Sbjct:  226 AKSPIRTLDELHVSEAPPTPYFPSISEKKQNNSSTEDSHACSREPEIDLPIDSFSNSDDEVGSN-GITDLG-FGIRRRHHCYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERILNAKTVTAASPMAPAYGLYLGCVKYDLP 370

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
PUSL1_MOUSE	4.502e-25	44.04	tRNA pseudouridine synthase-like 1 OS=Mus musculus...	[more]
TRUA_NEOSM	2.616e-23	40.00	tRNA pseudouridine synthase A OS=Neorickettsia sen...	[more]
TRUA_RHIME	1.248e-18	44.55	tRNA pseudouridine synthase A OS=Rhizobium melilot...	[more]
TRUA_RHILO	1.121e-17	44.09	tRNA pseudouridine synthase A OS=Rhizobium loti (s...	[more]
TRUA_SINMW	2.473e-17	40.38	tRNA pseudouridine synthase A OS=Sinorhizobium med...	[more]
TRUA_RHISN	6.712e-17	49.41	tRNA pseudouridine synthase A OS=Rhizobium sp. (st...	[more]
TRUA_BART1	8.266e-17	37.50	tRNA pseudouridine synthase A OS=Bartonella triboc...	[more]
TRUA_BARQU	1.027e-16	40.43	tRNA pseudouridine synthase A OS=Bartonella quinta...	[more]
TRUA_XANP2	1.075e-16	44.71	tRNA pseudouridine synthase A OS=Xanthobacter auto...	[more]
TRUA_BEII9	1.162e-16	43.27	tRNA pseudouridine synthase A OS=Beijerinckia indi...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0093808 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0PZE8_GOSAR	3.445e-107	98.29	tRNA pseudouridine synthase OS=Gossypium arboreum ...	[more]
A0A0D2QA78_GOSRA	2.822e-106	87.50	tRNA pseudouridine synthase OS=Gossypium raimondii...	[more]
A0A0D2NR71_GOSRA	7.107e-106	87.50	tRNA pseudouridine synthase OS=Gossypium raimondii...	[more]
A0A0D2QGW3_GOSRA	1.750e-105	98.97	tRNA pseudouridine synthase OS=Gossypium raimondii...	[more]
A0A0D2ME97_GOSRA	2.917e-104	96.58	tRNA pseudouridine synthase OS=Gossypium raimondii...	[more]
A0A0D2RAH5_GOSRA	1.494e-103	96.58	tRNA pseudouridine synthase OS=Gossypium raimondii...	[more]
A0A061DXC2_THECC	8.365e-98	92.86	tRNA pseudouridine synthase OS=Theobroma cacao GN=...	[more]
A0A061DW68_THECC	1.951e-97	92.86	tRNA pseudouridine synthase OS=Theobroma cacao GN=...	[more]
A0A061DWJ3_THECC	3.241e-97	86.67	tRNA pseudouridine synthase OS=Theobroma cacao GN=...	[more]
A0A061DY96_THECC	1.838e-95	91.84	tRNA pseudouridine synthase OS=Theobroma cacao GN=...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020094	Pseudouridine synthase I, TruA, N-terminal	GENE3D	3.30.70.580		coord: 90..158 e-value: 5.0E-23 score: 80.9
IPR020097	Pseudouridine synthase I, TruA, alpha/beta domain	PFAM	PF01416	PseudoU_synth_1	coord: 96..166 e-value: 3.2E-7 score: 30.6
None	No IPR available	PANTHER	PTHR11142:SF1	TRNA PSEUDOURIDINE SYNTHASE	coord: 40..170
IPR001406	Pseudouridine synthase I, TruA	PANTHER	PTHR11142	PSEUDOURIDYLATE SYNTHASE	coord: 40..170
IPR020103	Pseudouridine synthase, catalytic domain	SUPERFAMILY	55120	Pseudouridine synthase	coord: 90..157

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0093808 ID=g.barbadense_cottongen_reftransV1_0093808; Name=g.barbadense_cottongen_reftransV1_0093808; organism=Gossypium barbadense; type=contig; length=2117bp
CTAATAAATTGCATATCCTTGCATGTAAATAATGTTTGCTCCTTGGTTAA
GGCAGGAGATTGCTTGCCTGAAGTATGCTTTGAATGTTTAATTTGTTGAC
CAAAAAAATACAAAAAATAAAGAGAAAAGAATGTTCAAGTATTTAACTCC
ATTACCAGAAATTTCTTGGAAATGTACTTTCTTGAAAGAGTGATGAACTA
CCTATCCAAATAGTCTTGTTACTTATTATAATACGACTGAAATTTCAATA
AAGACATTTAAAATTACTGTATTCGTAATAGTTTTGGGGGGGAAATTAGC
CCCATTTTAGAGTCCGTCCCTGGACCAAAGTAGAGGCTCATGTAGTAGGA
AACAACAGCTTAAGCATCTCATGATCATGGTAGGTCATACTTCACACGTC
CAAGGTATAAACCACATGCAGGGGCCATTGGACTTGCGGCAGTCACTGTT
TTTGCATTCATAATTCTTTCCACATCAGAAGTTGTCAACTCTCCGGTACC
AACACATTTGAGAACACCAACAAGCAGTCTGACCTGGTGGTAAAGAAAGG
AGCGTGCCCGTGCTGTTACCACATAGCTGCGATGTCTCCTCCTTATTCCA
AATTCTTCTAGATTACTTTTACCATTATTCGTGTCTACCATATCATTAGT
ATTGGAGAATGAATTAATGGGGAGCTCAACATCAGGCTTAACAGAGCATG
TATGAGAATCTTTCAAGCTTGAATTGTTCTGTTCCCTCTCTGTGATTGAC
GGGAAATAAGGAGTTGCAGGTACCTCACAGACGTGGAGTTCATCTAAAGT
TCTGATTGGTGAGTTTGCCTAAACACACATCATCTTTGGGTAGTCAAGAA
AACTAGGAAGATGGAAAAATAAGATTCTCAGCTGTTTGGAAACAATGTTT
GTGTGATTATGTCATGTAGGCATACACATGCGTGTATGTGTACATCTACA
TGTAAAGCCCTGTAACACATATGATAATGATACTTTATGCACATGAGAAA
AGTAACCACCTGGCAACCTGCTGCCCTGAAGGAACTAAAATCATGATGTC
CAACAAGAACTTTGCATGCTTCCTGCATTGCATTTAGATCTAGTTTCTCT
GGTACATGCCATGCCCGCTCTTTTTCAAAGGTAGACAAAGGTTCAGAGCC
AGAAACCAAGCGGTAAAAGTACGTGCGCTCCTGAGCTTTAAACCTTGCAT
GAAAATCATTTGGAACACATCGGACATCGATCACTGAAATATCACCCTCA
TTCTTCTGTAAGAAATGGTTCACAGCTCTTCTAACAACAGCTGGTTCATG
AGGCGGTAACTGCATTTTTAGCATGAGAAGTAATTGTGCAGCAGTCATAA
ACTTATTTAAAATTAAGTTACTCGCAGAATACTCCAATAAGTAAATATTA
TGTGTAAATACTCACCACTTCACCAGGCTTTCTTTTGCTTATGCGTTCCA
CATCTACATGGCAAACATTTGATAAGGCATGTACACCAGCATCAGTTCGA
CTTGAACTAAAGATCGAAACCGGCTGACCTATAAATTTATGAAAAGCCTC
CTCTAATACGCCAACGACTGTGCGACAATTGGGCTGCTGCTGCGACCCAG
AGAAGCGAGTTCCGATGTACTCAATAGCTACTAAATAGCGCTGGATTCTA
GGGTTTTTGCTCATGCTTAAGTCTTGTAGTTGTTTATCTTCTTTATCTTG
GTCGTTGTGATCTTGGGTTTTAAGTATTTTAGAAGGCCTGGATTCAGTGG
GACTTCCCGTCATTTCATTTAGTCTTTTTTCCCTCAGTTTCTCAGCGTCC
AAACAACAGCCCGAGACGGTAGAGTTGTGGGTTTTAAAAAGGGTTTTCAG
TGACTTTGGACGGTACTTATACTGTTCCCAAATAGCAGCTTCCTTTTTGT
ACAAAAATGGCAGGTTTAACTTACTGCTATCTTTTGTTATTGGCTTGACC
CTAATTTAAACTCACCTATATTGTTTACTCGATTGTGCATACAAATACCT
GGTGAAGAAAAAAAAAATCATGATTGCCCTTTCACTACAAATCCATGGCA
GGAATAATAGTCCCTATCACTCAAGTGAGTCATCCATGTTTGAGGTGATT
TTCAATTGGGAACTACA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR020094	TruA/RsuA/RluB/E/F_N
IPR020097	PsdUridine_synth_TruA_a/b_dom
IPR001406	PsdUridine_synth_TruA
IPR020103	PsdUridine_synth_cat_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0009982	pseudouridine synthase activity
GO:0003723	RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0009451	RNA modification
GO:0001522	pseudouridine synthesis

Search form

g.barbadense_cottongen_reftransV1_0093808, g.barbadense_cottongen_reftransV1_0093808 (contig) Gossypium barbadense

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